Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005859

Physical Location & Seq

Genomic Coordinates Reverse (-)

42399788 .. 42400939

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1311600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGTACTGCATTTTCAGATGCGCAAAAACAACTTGGAGAATATGTGACATGGTTGCAATCAGATAGTGCTCGTGAAGGAAGGATGTATGCAGAAATGTTTGAAAAACGTTGGCCTTCATTTGTCTATCCGTACAGTGGGGTGCATTCGGAGAATTCGCTGAAGAAAGTAAACGAACTCAGCTTGAAAGTGAAAGAGGGCTTCAGTACCAGTGCTGCTTCCAAATTGTTTGAGCAAGAAATACGTGAAGTGTCTCTGGCAACTTTTGGTGGACTTGGAGCGGCAGGTTTATCTGCTTCACTTCTGACATCTGTGCTGCCGACCACATTAGAAGATCTTCTTGCTCTTGGTCTTGCCTCAGCTGGCGGGTTATTAGCAATATCAAAATTTCCAGCTCGTCGGCAAGAGATGATAGAGAAGGTGAAAAGGACTGCAGACGCCTTGGCACGTGAAGTTGAAGAGGCGATGCAGAATGATCTTTCCGAAGCTATTGGAAATATGGAAATCTTCGTGAAGAACGTTAGCCAGCCTTACCAAGATACGGCGCAGCAGAGACTAGACAAACTCCTAGAGCTTCAAGATGAAATATCCAATGTTGATAAACAACTTCAAACACTACGAATCGAAATCCAAAATTTTCACGTATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009668 GO:0009707 GO:0009791 GO:0009941 GO:0009987 GO:0010027 GO:0010228 GO:0010363 GO:0010941 GO:0016020 GO:0016043 GO:0019867 GO:0022414 GO:0031090 GO:0031347 GO:0031348 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034051 GO:0042170 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0060548 GO:0061024 GO:0061458 GO:0065007 GO:0071840 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900424 GO:1900425 GO:1902477 GO:1902478

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_N TMP-TENI

Protein Analysis

217

Amino Acids

23.97

Weight (kDa)

5.03

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03160 AT1G03160 AT1G03160 AT1G03160
fragaria_vesca	FvH4_2g23600 FvH4_2g23600 FvH4_2g23600 FvH4_2g23600 FvH4_2g23600
malus_domestica	MD00G1063200.v1.1 MD11G1286100.v1.1 MD11G1311300.v1.1 MD11G1311400.v1.1 MD11G1311600.v1.1 MD11G1311700.v1.1 MD11G1312200.v1.1
prunus_persica	Prupe.8G241300_v2.0.a1
pyrus_communis	pycom11g25360
rosa_chinensis	RchiOBHm_Chr6g0291071
rosa_laevigata	RLG00000012149
rosa_multiflora	Rmu_co8364727.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176400
rosa_rugosa	Rorug06G0217300
rosa_samantha	Rh6AG327500 Rh6BG335000 Rh6CG341200 Rh6DG328500
rosa_wichuraiana	Rw6G028490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	24
Acc36I	ACCTGC	1 cut(s)	275
AccBSI	CCGCTC	1 cut(s)	281
AciI	CCGC	2 cut(s)	281, 366
AclI	AACGTT	2 cut(s)	109, 519
AcsI	RAATTY	3 cut(s)	154, 386, 634
AcuI	CTGAAG	2 cut(s)	182, 187
AcvI	CACGTG	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	438
AfaI	GTAC	3 cut(s)	7, 134, 208
AfiI	CCNNNNNNNGG	2 cut(s)	137, 541
AgsI	TTSAA	5 cut(s)	104, 187, 458, 578, 611
AluBI	AGCT	5 cut(s)	183, 362, 395, 488, 574
AluI	AGCT	5 cut(s)	183, 362, 395, 488, 574
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	2 cut(s)	258, 547
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	3 cut(s)	215, 316, 547
ApoI	RAATTY	3 cut(s)	154, 386, 634
Asp700I	GAANNNNTTC	1 cut(s)	336
AspLEI	GCGC	2 cut(s)	25, 547
AsuHPI	GGTGA	1 cut(s)	433
BauI	CACGAG	1 cut(s)	72
BbrPI	CACGTG	1 cut(s)	449
Bbv12I	GWGCWC	1 cut(s)	73
BbvCI	CCTCAGC	1 cut(s)	358
BbvI	GCAGC	3 cut(s)	202, 303, 559
BceAI	ACGGC	1 cut(s)	558
BcoDI	GTCTC	2 cut(s)	258, 547
BfaI	CTAG	2 cut(s)	557, 569
BfmI	CTRYAG	1 cut(s)	432
BfuAI	ACCTGC	1 cut(s)	275
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	4 cut(s)	216, 282, 317, 548
BlsI	GCNGC	4 cut(s)	217, 283, 318, 549
BmsI	GCATC	2 cut(s)	10, 456
Bpu10I	CCTNAGC	1 cut(s)	358
BsaAI	YACGTR	3 cut(s)	245, 449, 643
BsaHI	GRCGYC	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	441
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 541
Bse1I	ACTGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	137, 541
BseMII	CTCAG	2 cut(s)	193, 372
BseNI	ACTGG	1 cut(s)	210
BseXI	GCAGC	3 cut(s)	202, 303, 559
BshFI	GGCC	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	137, 541
BsmAI	GTCTC	2 cut(s)	258, 547
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	2 cut(s)	334, 475
BspACI	CCGC	2 cut(s)	281, 366
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	2 cut(s)	192, 371
BspMAI	CTGCAG	1 cut(s)	436
BspMI	ACCTGC	1 cut(s)	275
BsrBI	CCGCTC	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	2 cut(s)	334, 475
BssNI	GRCGYC	1 cut(s)	438
BssSI	CACGAG	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	441
Bst2BI	CACGAG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	453
BstACI	GRCGYC	1 cut(s)	438
BstBAI	YACGTR	3 cut(s)	245, 449, 643
BstC8I	GCNNGC	2 cut(s)	364, 527
BstDEI	CTNAG	2 cut(s)	179, 358
BstF5I	GGATG	1 cut(s)	90
BstHHI	GCGC	2 cut(s)	25, 547
BstKTI	GATC	2 cut(s)	337, 478
BstMAI	GTCTC	2 cut(s)	258, 547
BstMBI	GATC	2 cut(s)	334, 475
BstSFI	CTRYAG	1 cut(s)	432
BstV1I	GCAGC	3 cut(s)	202, 303, 559
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	115
BtgZI	GCGATG	1 cut(s)	479
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	2 cut(s)	142, 217
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	2 cut(s)	364, 527
CfoI	GCGC	2 cut(s)	25, 547
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	3 cut(s)	6, 133, 207
CviAII	CATG	1 cut(s)	51
CviJI	RGCY	9 cut(s)	115, 183, 201, 362, 395, 488, 525, 529, 574
CviKI_1	RGCY	9 cut(s)	115, 183, 201, 362, 395, 488, 525, 529, 574
CviQI	GTAC	3 cut(s)	6, 133, 207
DdeI	CTNAG	2 cut(s)	179, 358
DpnI	GATC	2 cut(s)	336, 477
DpnII	GATC	2 cut(s)	334, 475
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Eco130I	CCWWGG	1 cut(s)	441
Eco57I	CTGAAG	2 cut(s)	182, 187
Eco72I	CACGTG	1 cut(s)	449
EcoRI	GAATTC	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	1 cut(s)	54
FaiI	YATR	4 cut(s)	45, 52, 90, 500
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FatI	CATG	1 cut(s)	50
FauI	CCCGC	1 cut(s)	359
Fnu4HI	GCNGC	4 cut(s)	216, 282, 317, 548
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	4 cut(s)	216, 282, 317, 548
FspBI	CTAG	2 cut(s)	557, 569
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	2 cut(s)	24, 546
GluI	GCNGC	4 cut(s)	216, 282, 317, 548
HaeIII	GGCC	1 cut(s)	115
HgaI	GACGC	1 cut(s)	446
HhaI	GCGC	2 cut(s)	25, 547
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	1 cut(s)	54
Hin6I	GCGC	2 cut(s)	23, 545
HinP1I	GCGC	2 cut(s)	23, 545
HinfI	GANTC	1 cut(s)	621
HphI	GGTGA	1 cut(s)	433
Hpy166II	GTNNAC	2 cut(s)	172, 272
Hpy188I	TCNGA	5 cut(s)	19, 64, 151, 306, 484
Hpy188III	TCNNGA	4 cut(s)	74, 511, 578, 648
Hpy8I	GTNNAC	2 cut(s)	172, 272
Hpy99I	CGWCG	1 cut(s)	402
HpyAV	CCTTC	4 cut(s)	71, 75, 126, 412
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	5 cut(s)	109, 244, 448, 519, 642
HpyCH4V	TGCA	6 cut(s)	11, 58, 92, 145, 434, 469
HpyF3I	CTNAG	2 cut(s)	179, 358
HpySE526I	ACGT	5 cut(s)	109, 244, 448, 519, 642
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	1 cut(s)	54
HspAI	GCGC	2 cut(s)	23, 545
Kzo9I	GATC	2 cut(s)	334, 475
LmnI	GCTCC	1 cut(s)	278
LpnPI	CCDG	6 cut(s)	223, 242, 270, 348, 405, 539
Lsp1109I	GCAGC	3 cut(s)	202, 303, 559
LweI	GCATC	2 cut(s)	10, 456
MaeI	CTAG	2 cut(s)	557, 569
MaeII	ACGT	5 cut(s)	109, 244, 448, 519, 642
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	2 cut(s)	336, 477
MbiI	CCGCTC	1 cut(s)	281
MboI	GATC	2 cut(s)	334, 475
MboII	GAAGA	6 cut(s)	175, 329, 344, 470, 499, 526
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	4 cut(s)	154, 224, 386, 634
MnlI	CCTC	3 cut(s)	190, 367, 454
MroXI	GAANNNNTTC	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	362
Mva1269I	GAATGC	1 cut(s)	145
NdeII	GATC	2 cut(s)	334, 475
NlaIII	CATG	1 cut(s)	54
NmuCI	GTSAC	1 cut(s)	46
NsbI	TGCGCA	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	1 cut(s)	516
PctI	GAATGC	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	621
PkrI	GCNGC	4 cut(s)	217, 283, 318, 549
PmaCI	CACGTG	1 cut(s)	449
PmlI	CACGTG	1 cut(s)	449
Ppu21I	YACGTR	3 cut(s)	245, 449, 643
Psp1406I	AACGTT	2 cut(s)	109, 519
PspCI	CACGTG	1 cut(s)	449
PstI	CTGCAG	1 cut(s)	436
PsuI	RGATCY	1 cut(s)	334
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	3 cut(s)	7, 134, 208
RsaNI	GTAC	3 cut(s)	6, 133, 207
SatI	GCNGC	4 cut(s)	216, 282, 317, 548
Sau3AI	GATC	2 cut(s)	334, 475
SduI	GDGCHC	1 cut(s)	73
SfaNI	GCATC	2 cut(s)	10, 456
SfcI	CTRYAG	1 cut(s)	432
Sse9I	AATT	4 cut(s)	154, 224, 386, 634
SsiI	CCGC	2 cut(s)	281, 366
SspMI	CTAG	2 cut(s)	557, 569
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	5 cut(s)	112, 247, 451, 522, 645
TaqI	TCGA	1 cut(s)	624
TasI	AATT	4 cut(s)	154, 224, 386, 634
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	621
TscAI	CASTG	2 cut(s)	142, 217
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	3 cut(s)	215, 316, 547
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	108, 597
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	2 cut(s)	142, 217
XapI	RAATTY	3 cut(s)	154, 386, 634
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	2 cut(s)	557, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.