FvH4_2g23600

Dynamin family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
19316240 .. 19321735
5496 bp
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UTR
Exon/CDS
Intron
FvH4_2g23600.t4

Sequence Viewer

Length: 1716 bp
ATGGAGGAGGTTTCGCTTCTAATCGATGCAGTATCTCAAATTGATGAGCCATTTTCACTGGTTATAGTGGGCGAATTTAACTCTGGGAAATCGACTGTTATTAATGCACTTCTTGGGAGAAGATATCTTAAAGAGGGGGTTGTTCCCACAACTAATGAGATCACCTTCTTACGCTATTCTGAGATGGACGGTGAGGAACAATGTTGTGAAAGGCATCCAGATGGTCAATATATATGCTACCTTCCAGCTCCCATTCTTAAAGAAATTAATGTTGTTGATACACCTGGAACTAATGTGATATTGCAAAGGCAACAACGCCTTACCGAGGAATTTGTACCCCGTGCTGATTTGCTTCTTTTTGTTCTCTCTGCCGATCGCCCTTTAACTGAAAGCGAGGTCGCTTTTCTTCGTTATACTCAGCAGTGGAAGAAGAAAGTAGTGTTTGTCTTGAACAAATCTGATATCTATCGGAATGCTCATGAGCTTGAGGAAGCAATGTCATTCATCAAGGAGAATACCCAGAAATTGCTGAATACTGAACATGTGACATTATTTCCCGTTTCTGCACGAACTGCTCTTGAGGCAAAACTTGCGTCTTCTGCTTTCAGGGAAGATTACAAAAAACTATCAGTATCTGATTCTCAGCGGAAGAGCAACAACTTCTATGAACTTGAGAACTTCTTGTATAGTTTCTTAGATGGGTCAACAAGTACAGGAATGGAAAGAATGAAACTTAAATTGGAAACACCCATTGCAATTGCGGAGAAACTACTTTCTGCTTGTGAAACTCTTGTGACACAAGACTACCGATATGCCAAGCAGGATTTGACCTCAATAAATGATATAGTTGGCAGCGTAAAGAACTATGCAGTGAAGATGGAAAATGAGAGCGTTGCTTGGAGAAGAAGAATTTTGTCTGTGATTGATACAACAAAGTCACGTATTGTGGAGCTCATAGAAGCTACTCTGCTTATATCAAATCTTGATCTTGTTGCTTTCTATGTTTTCAAAGGGGAATCTGCTACCATTCCAGCCACCTCAAGGGTTCAGAACGACATTATAGGACCTGCATTTTCAGATGTACAAAAACTCCTCGGAGAATATGTCATATGGCTGCAATCGGACAATGTTCGGGAAGGAAGAATGTACTCAGACACATTTGAAAAGTGTTTGCCTTCATTCGTATATCCACAAAGTCGGGTGAATTTGGAGAGATTTGAATCGCTGGAAAAAGTAAATAAACACAGCTTGAAAGTCATGGAGGACTTCAGCGCTAATGCTGCTGCCAAATTGTTTGAGCAAGAAATACGTGAAGCGTTTCTTGGCACTTTTGGTGGACTAGGAGCAGCTGGTTTATCTGCTTCACTTCTGACAACTGTGCTGCCGACCACTTTGGAAGATCTTCTTGCTCTTGGTCTTTGCTCAGCTGGCGGGTTCATAGCTATATCAAAATTTCCAGTTCGTAGGCAAGAGATGATAGAGAAGGTAAAAAGGACTGCGGATGGCTTGGCACGTGAGGTTGAGCAGTCTATGCAGAACGATCTTTCAGAAGCTATTGAGAACTTGGAAAGGTTTGTGAAAAAAGTCAGCCAGCCGTACCAAGATACAGCACAGCAGAGATTAGACAAACTCCTAGAGCTTCAAAATGAAATATCCAATGTTGATAAACAACTACAAACACTACGAATCGAAATCCAAAATCTTCATGTATCGTGA

Protein Analysis

572

Amino Acids

64.65

Weight (kDa)

5.16

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 16 - 91 8.9e-10 Dynamin family
GTP_EFTU PF00009 27 - 135 9e-06 Elongation factor Tu GTP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1075
AciI CCGC 4 cut(s) 646, 761, 1431, 1499
AcsI RAATTY 5 cut(s) 74, 329, 909, 1204, 1451
AcuI CTGAAG 1 cut(s) 1252
AcvI CACGTG 1 cut(s) 1514
AfaI GTAC 5 cut(s) 336, 712, 1083, 1148, 1598
AfeI AGCGCT 1 cut(s) 1273
AfiI CCNNNNNNNGG 2 cut(s) 325, 1041
AflIII ACRYGT 1 cut(s) 541
AgsI TTSAA 6 cut(s) 451, 1009, 1163, 1220, 1252, 1643
AjnI CCWGG 1 cut(s) 283
AjuI GAANNNNNNNTTGG 4 cut(s) 722, 754, 1305, 1337
Alw21I GWGCWC 1 cut(s) 954
AlwNI CAGNNNCTG 1 cut(s) 635
Aor51HI AGCGCT 1 cut(s) 1273
ApeKI GCWGC 6 cut(s) 852, 1114, 1280, 1283, 1346, 1381
ApoI RAATTY 5 cut(s) 74, 329, 909, 1204, 1451
ArsI GACNNNNNNTTYG 2 cut(s) 578, 610
AseI ATTAAT 2 cut(s) 102, 267
Asp700I GAANNNNTTC 2 cut(s) 1317, 1401
AspLEI GCGC 1 cut(s) 1274
AspS9I GGNCC 1 cut(s) 1064
AsuHPI GGTGA 3 cut(s) 154, 203, 1213
AvaII GGWCC 1 cut(s) 1064
BanII GRGCYC 1 cut(s) 954
BbrPI CACGTG 1 cut(s) 1514
BbsI GAAGAC 1 cut(s) 588
Bbv12I GWGCWC 1 cut(s) 954
BbvI GCAGC 6 cut(s) 864, 1101, 1267, 1270, 1358, 1368
BccI CCATC 5 cut(s) 178, 215, 692, 871, 1496
BceAI ACGGC 1 cut(s) 1579
BciT130I CCWGG 1 cut(s) 285
BfaI CTAG 2 cut(s) 1340, 1634
BfoI RGCGCY 1 cut(s) 1275
BfuAI ACCTGC 1 cut(s) 1075
BglII AGATCT 1 cut(s) 1399
BisI GCNGC 6 cut(s) 853, 1115, 1281, 1284, 1347, 1382
BlpI GCTNAGC 1 cut(s) 1423
BlsI GCNGC 6 cut(s) 854, 1116, 1282, 1285, 1348, 1383
Bme1390I CCNGG 1 cut(s) 285
Bme18I GGWCC 1 cut(s) 1064
BmgT120I GGNCC 1 cut(s) 1064
BmrFI CCNGG 1 cut(s) 285
BmsI GCATC 2 cut(s) 16, 223
BpiI GAAGAC 1 cut(s) 588
Bpu1102I GCTNAGC 1 cut(s) 1423
BpuEI CTTGAG 4 cut(s) 506, 599, 692, 1024
Bsa29I ATCGAT 1 cut(s) 24
BsaAI YACGTR 3 cut(s) 941, 1310, 1514
BsaBI GATNNNNATC 2 cut(s) 465, 1219
BsaJI CCNNGG 2 cut(s) 324, 1093
BsaXI ACNNNNNCTCC 4 cut(s) 1074, 1089, 1104, 1119
Bsc4I CCNNNNNNNGG 2 cut(s) 325, 1041
Bse1I ACTGG 2 cut(s) 63, 1457
Bse3DI GCAATG 2 cut(s) 501, 750
Bse8I GATNNNNATC 2 cut(s) 465, 1219
BseBI CCWGG 1 cut(s) 285
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 324, 1093
BseGI GGATG 2 cut(s) 214, 1507
BseJI GATNNNNATC 2 cut(s) 465, 1219
BseLI CCNNNNNNNGG 2 cut(s) 325, 1041
BseMI GCAATG 2 cut(s) 501, 750
BseMII CTCAG 5 cut(s) 171, 431, 656, 1164, 1437
BseNI ACTGG 2 cut(s) 63, 1457
BseRI GAGGAG 2 cut(s) 20, 1082
BseXI GCAGC 6 cut(s) 864, 1101, 1267, 1270, 1358, 1368
BsgI GTGCAG 1 cut(s) 549
Bsh1285I CGRYCG 1 cut(s) 376
BshVI ATCGAT 1 cut(s) 24
BsiEI CGRYCG 1 cut(s) 376
BsiHKAI GWGCWC 1 cut(s) 954
BslI CCNNNNNNNGG 2 cut(s) 325, 1041
BsmI GAATGC 1 cut(s) 478
Bsp1286I GDGCHC 1 cut(s) 954
Bsp1407I TGTACA 1 cut(s) 1081
Bsp143I GATC 5 cut(s) 159, 373, 985, 1399, 1540
Bsp1720I GCTNAGC 1 cut(s) 1423
BspACI CCGC 4 cut(s) 646, 761, 1431, 1499
BspCNI CTCAG 5 cut(s) 172, 430, 655, 1163, 1436
BspDI ATCGAT 1 cut(s) 24
BspHI TCATGA 1 cut(s) 478
BspMI ACCTGC 1 cut(s) 1075
BspQI GCTCTTC 1 cut(s) 644
BsrDI GCAATG 2 cut(s) 501, 750
BsrGI TGTACA 1 cut(s) 1081
BsrI ACTGG 2 cut(s) 63, 1457
BssECI CCNNGG 2 cut(s) 324, 1093
BssMI GATC 5 cut(s) 159, 373, 985, 1399, 1540
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 3 cut(s) 97, 191, 1378
Bst6I CTCTTC 1 cut(s) 644
BstAPI GCANNNNNTGC 3 cut(s) 572, 590, 1531
BstAUI TGTACA 1 cut(s) 1081
BstBAI YACGTR 3 cut(s) 941, 1310, 1514
BstC8I GCNNGC 2 cut(s) 1429, 1592
BstDEI CTNAG 6 cut(s) 180, 417, 642, 694, 1150, 1423
BstENI CCTNNNNNAGG 1 cut(s) 323
BstF5I GGATG 2 cut(s) 214, 1507
BstH2I RGCGCY 1 cut(s) 1275
BstHHI GCGC 1 cut(s) 1274
BstKTI GATC 5 cut(s) 162, 376, 988, 1402, 1543
BstMBI GATC 5 cut(s) 159, 373, 985, 1399, 1540
BstMCI CGRYCG 1 cut(s) 376
BstMWI GCNNNNNNNGC 7 cut(s) 572, 581, 590, 599, 1280, 1428, 1531
BstNI CCWGG 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 545
BstSCI CCNGG 1 cut(s) 283
BstV1I GCAGC 6 cut(s) 864, 1101, 1267, 1270, 1358, 1368
BstV2I GAAGAC 1 cut(s) 588
BstX2I RGATCY 1 cut(s) 1399
BstYI RGATCY 1 cut(s) 1399
Bsu15I ATCGAT 1 cut(s) 24
BsuTUI ATCGAT 1 cut(s) 24
BtsCI GGATG 2 cut(s) 214, 1507
BtsI GCAGTG 2 cut(s) 428, 876
BtsIMutI CAGTG 3 cut(s) 56, 428, 876
BveI ACCTGC 1 cut(s) 1075
Cac8I GCNNGC 2 cut(s) 1429, 1592
CaiI CAGNNNCTG 1 cut(s) 635
CciI TCATGA 1 cut(s) 478
CfoI GCGC 1 cut(s) 1274
Cfr13I GGNCC 1 cut(s) 1064
ClaI ATCGAT 1 cut(s) 24
CseI GACGC 1 cut(s) 582
Csp6I GTAC 5 cut(s) 335, 711, 1082, 1147, 1597
CviAII CATG 4 cut(s) 479, 542, 1258, 1706
CviQI GTAC 5 cut(s) 335, 711, 1082, 1147, 1597
DdeI CTNAG 6 cut(s) 180, 417, 642, 694, 1150, 1423
DpnI GATC 5 cut(s) 161, 375, 987, 1401, 1542
DpnII GATC 5 cut(s) 159, 373, 985, 1399, 1540
Eam1104I CTCTTC 1 cut(s) 644
EarI CTCTTC 1 cut(s) 644
Ecl136II GAGCTC 1 cut(s) 952
Eco24I GRGCYC 1 cut(s) 954
Eco32I GATATC 2 cut(s) 125, 463
Eco47I GGWCC 1 cut(s) 1064
Eco47III AGCGCT 1 cut(s) 1273
Eco53kI GAGCTC 1 cut(s) 952
Eco57I CTGAAG 1 cut(s) 1252
Eco72I CACGTG 1 cut(s) 1514
EcoICRI GAGCTC 1 cut(s) 952
EcoNI CCTNNNNNAGG 1 cut(s) 323
EcoO109I RGGNCCY 1 cut(s) 1064
EcoRII CCWGG 1 cut(s) 283
EcoRV GATATC 2 cut(s) 125, 463
EcoT38I GRGCYC 1 cut(s) 954
FaeI CATG 4 cut(s) 482, 545, 1261, 1709
FalI AAGNNNNNCTT 4 cut(s) 1305, 1337, 1389, 1421
FatI CATG 4 cut(s) 478, 541, 1257, 1705
FauI CCCGC 1 cut(s) 1424
FauNDI CATATG 1 cut(s) 1109
Fnu4HI GCNGC 6 cut(s) 853, 1115, 1281, 1284, 1347, 1382
FokI GGATG 2 cut(s) 201, 1514
FriOI GRGCYC 1 cut(s) 954
Fsp4HI GCNGC 6 cut(s) 853, 1115, 1281, 1284, 1347, 1382
FspBI CTAG 2 cut(s) 1340, 1634
GlaI GCGC 1 cut(s) 1273
GluI GCNGC 6 cut(s) 853, 1115, 1281, 1284, 1347, 1382
HaeII RGCGCY 1 cut(s) 1275
HgaI GACGC 1 cut(s) 582
HhaI GCGC 1 cut(s) 1274
Hin1II CATG 4 cut(s) 482, 545, 1261, 1709
Hin6I GCGC 1 cut(s) 1272
HinP1I GCGC 1 cut(s) 1272
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HinfI GANTC 4 cut(s) 638, 1016, 1220, 1686
HphI GGTGA 3 cut(s) 154, 203, 1213
Hpy166II GTNNAC 2 cut(s) 705, 1337
Hpy188III TCNNGA 7 cut(s) 218, 448, 479, 578, 983, 1133, 1713
Hpy8I GTNNAC 2 cut(s) 705, 1337
HpyAV CCTTC 5 cut(s) 175, 251, 1130, 1185, 1477
HpyCH4III ACNGT 3 cut(s) 97, 191, 1378
HpyCH4IV ACGT 3 cut(s) 940, 1309, 1513
HpyCH4V TGCA 9 cut(s) 29, 107, 304, 566, 755, 869, 1070, 1117, 1534
HpyF10VI GCNNNNNNNGC 7 cut(s) 572, 581, 590, 599, 1280, 1428, 1531
HpyF3I CTNAG 6 cut(s) 180, 417, 642, 694, 1150, 1423
HpySE526I ACGT 3 cut(s) 940, 1309, 1513
Hsp92II CATG 4 cut(s) 482, 545, 1261, 1709
HspAI GCGC 1 cut(s) 1272
Kzo9I GATC 5 cut(s) 159, 373, 985, 1399, 1540
LguI GCTCTTC 1 cut(s) 644
LmnI GCTCC 3 cut(s) 253, 949, 1343
Lsp1109I GCAGC 6 cut(s) 864, 1101, 1267, 1270, 1358, 1368
LweI GCATC 2 cut(s) 16, 223
MaeI CTAG 2 cut(s) 1340, 1634
MaeII ACGT 3 cut(s) 940, 1309, 1513
MaeIII GTNAC 3 cut(s) 544, 793, 936
MalI GATC 5 cut(s) 161, 375, 987, 1401, 1542
MboI GATC 5 cut(s) 159, 373, 985, 1399, 1540
MfeI CAATTG 1 cut(s) 756
MflI RGATCY 1 cut(s) 1399
MhlI GDGCHC 1 cut(s) 954
MroXI GAANNNNTTC 2 cut(s) 1317, 1401
MseI TTAA 7 cut(s) 78, 102, 129, 258, 267, 383, 735
MslI CAYNNNNRTG 1 cut(s) 219
MspA1I CMGCKG 3 cut(s) 646, 1349, 1427
MspR9I CCNGG 1 cut(s) 285
MunI CAATTG 1 cut(s) 756
Mva1269I GAATGC 1 cut(s) 478
MvaI CCWGG 1 cut(s) 285
MwoI GCNNNNNNNGC 7 cut(s) 572, 581, 590, 599, 1280, 1428, 1531
NdeI CATATG 1 cut(s) 1109
NdeII GATC 5 cut(s) 159, 373, 985, 1399, 1540
NlaIII CATG 4 cut(s) 482, 545, 1261, 1709
NmuCI GTSAC 3 cut(s) 544, 793, 936
NspI RCATGY 1 cut(s) 545
PagI TCATGA 1 cut(s) 478
PciI ACATGT 1 cut(s) 541
PciSI GCTCTTC 1 cut(s) 644
PctI GAATGC 1 cut(s) 478
PdmI GAANNNNTTC 2 cut(s) 1317, 1401
PfeI GAWTC 4 cut(s) 638, 1016, 1220, 1686
PkrI GCNGC 6 cut(s) 854, 1116, 1282, 1285, 1348, 1383
Ple19I CGATCG 1 cut(s) 376
PmaCI CACGTG 1 cut(s) 1514
PmlI CACGTG 1 cut(s) 1514
Ppu21I YACGTR 3 cut(s) 941, 1310, 1514
PpuMI RGGWCCY 1 cut(s) 1064
PscI ACATGT 1 cut(s) 541
PshBI ATTAAT 2 cut(s) 102, 267
Psp124BI GAGCTC 1 cut(s) 954
Psp5II RGGWCCY 1 cut(s) 1064
Psp6I CCWGG 1 cut(s) 283
PspCI CACGTG 1 cut(s) 1514
PspGI CCWGG 1 cut(s) 283
PspPI GGNCC 1 cut(s) 1064
PspPPI RGGWCCY 1 cut(s) 1064
PstNI CAGNNNCTG 1 cut(s) 635
PsuI RGATCY 1 cut(s) 1399
PvuI CGATCG 1 cut(s) 376
PvuII CAGCTG 2 cut(s) 1349, 1427
RsaI GTAC 5 cut(s) 336, 712, 1083, 1148, 1598
RsaNI GTAC 5 cut(s) 335, 711, 1082, 1147, 1597
RseI CAYNNNNRTG 1 cut(s) 219
SacI GAGCTC 1 cut(s) 954
SapI GCTCTTC 1 cut(s) 644
SaqAI TTAA 7 cut(s) 78, 102, 129, 258, 267, 383, 735
SatI GCNGC 6 cut(s) 853, 1115, 1281, 1284, 1347, 1382
Sau3AI GATC 5 cut(s) 159, 373, 985, 1399, 1540
Sau96I GGNCC 1 cut(s) 1064
ScrFI CCNGG 1 cut(s) 285
SduI GDGCHC 1 cut(s) 954
SfaNI GCATC 2 cut(s) 16, 223
SinI GGWCC 1 cut(s) 1064
SmiMI CAYNNNNRTG 1 cut(s) 219
SmlI CTYRAG 4 cut(s) 485, 578, 671, 1039
SmoI CTYRAG 4 cut(s) 485, 578, 671, 1039
SsiI CCGC 4 cut(s) 646, 761, 1431, 1499
SspMI CTAG 2 cut(s) 1340, 1634
SstI GAGCTC 1 cut(s) 954
StyD4I CCNGG 1 cut(s) 283
TaaI ACNGT 3 cut(s) 97, 191, 1378
TaiI ACGT 3 cut(s) 943, 1312, 1516
TaqI TCGA 3 cut(s) 24, 92, 1689
TatI WGTACW 3 cut(s) 710, 1081, 1146
TfiI GAWTC 4 cut(s) 638, 1016, 1220, 1686
Tru1I TTAA 7 cut(s) 78, 102, 129, 258, 267, 383, 735
Tru9I TTAA 7 cut(s) 78, 102, 129, 258, 267, 383, 735
TscAI CASTG 3 cut(s) 63, 428, 876
TseFI GTSAC 3 cut(s) 544, 793, 936
TseI GCWGC 6 cut(s) 852, 1114, 1280, 1283, 1346, 1381
Tsp45I GTSAC 3 cut(s) 544, 793, 936
TspDTI ATGAA 7 cut(s) 493, 681, 743, 1167, 1426, 1662, 1694
TspRI CASTG 3 cut(s) 63, 428, 876
VpaK11BI GGWCC 1 cut(s) 1064
VspI ATTAAT 2 cut(s) 102, 267
XagI CCTNNNNNAGG 1 cut(s) 323
XapI RAATTY 5 cut(s) 74, 329, 909, 1204, 1451
XceI RCATGY 1 cut(s) 545
XmnI GAANNNNTTC 2 cut(s) 1317, 1401
XspI CTAG 2 cut(s) 1340, 1634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.