Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005859

Physical Location & Seq

Genomic Coordinates Forward (+)

54252861 .. 54259333

Gene Structure 6473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26117

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2766 bp

ATGGTACCCCTCATTTCCTTCCACACCTCCACAACACACCCTCTCCTACTAACCCCAACCTCAACCCCGTTCCTCCCCCGCCGCCCCAAATCCCACCTCCCCCGACGAACCCACTTCCCCATTTCCTCAATCTCCCAGAACCCAAATCAATTCACCCGCCAAAACCCACAACCCCAGCCCCAGCCCCCAAGAACCCAGTTCCCCGGTGGCTTCAGGCGCCCAGAAATCAAGGTCCCCAACATCGTCCTCCAATTGGACCCTGAAGACGTCTTGGCTTCCGACGACGTGTTGGGTTTGGTCGATAAAGCTGTGTCCAAATGGGTTGGGATTCTTGTCCTCGACGGCCGTGAAGCTAACGGCGGCCTCCTCTATGAGGCCGCCTGTAAGTTGAAGTCGGTGGTCGGAGACCGGGCTTACTTGTTGATCTCTGAGCGCGTGGATATCGCAGCCGCAGCTAATGCGAGTGGGATTCTGCTCTCCGACCAAGGTCTTCCGACCATTGTAGCAAGAAGCACAATGATGGCTTCAAAATCTGATTCGGTAGTGCTTCCTTTGGTGGCTAGGAATGTGCAGGACGCAGATGCTGCCGTAAAAGCCTCCAGCTCCGAAGGAGCTGATTTTCTTATATATAGTGTTGATGGAGAGGAAAATGTTCCTGCTGTATTGAACTCTCTGTTTAAAAATGTGAAGATACCGATATTTGTCACGATCAGTTCATACGGCAGGTTATATACAGAGGTGCCAGGACTACTCAGATCTGGGGCTAGTGGATTAGTTACATCTTTGAAGGATTTCAGGATGCTTGATGACGATGCGTTGAGCAAGTTGTTTGATATTGTGTACATGGTGAATAGTAAAAGACAGGATGAAGTTGAGAGCTTCAGTAAGACCAAATTTTCGGGTGTGCGTAGTGGTGCCAAGGACACTAAAACTGTTGCTGGGTTTCTTAAACTGGAGGATAGAGAAAAGCAGTTCATCGAAACAGAGAGATCGGTGTTGCTCAAAGCAATAAGTGTTATCCAGAGAGCTGCCCCACTGATGGAGGAGGTGTCACTTCTCATTGATGCAGTTTCTCAAATTGATGAGCCATTTTTACTGGTTATAGAATATACATTGGGCGAATTTAACTCTGGTAAATCAACTGTTATTAATGCACTTCTTGGAAGAAGATATCTTGAAGAGGGGGTTGTTCCCACAACTAATGAGATCACCTTCTTACGCTATTCTGAGATGGATGGTGAGGAACAACATTGTGAAAGGCATCCAGATGGTCAATATATATGCTACCTTCCAGCTCCCATTCTTAAAGAAATGAACGTTGTTGATACACCTGGAACTAATGTGATTTTGCAAAGGCAACAACGCCTTACCGAGGAATTTGTACCCCGTGCTGATTTGCTTCTTTTTGTTATCTCTGCCGATCGCCCTTTAACTGAAAGCGAGGTTGCTTTCCTTCGGTACACTCAGCAGTGGAAGAAGAAAGTAGTGTTTGTCTTGAACAAATCTGATATCTATCGGAATGCTCATGAGCTTGAGGAAGGTATGTCATTCATCAAGGAGAATACCCAGAAATTGCTGAATACTGAACATGTGACATTATTTCCCATCTCTGCACGAACTGCTCTTGAGGCAAAACTGTCATCTTCTGCTTTTGGGGAAGATTATGCAAAACTATCGGTATCTGATTCTCAGTGGAAAAGCAATAACTTCTATGAGCTTGAGAACTTCTTGTATAGTTTTTTAGATGGGTCAACAAGTACAGGAATGGAAAGAATGAAACTCAAACTAGAAACACCCATTGCAATTGCAGAGAAACTACTTTCTGGTTGTGAAACTCTTGTCACACAAGACTGCCGATATGCCAAGCAGGACTTGGCCTCAATAAATGATATAGTTGGCAGCGTAAAGAACTATGCAGTGAAGATGGAAAATGAGAGCATTGCTTGGAGAAGAAGAATCCTATCTGTGATTGATACTACAAAGTCACGTGTTGTGGAGCTCATAGAAGCTACTCTGCTTATATCAAATCTTGATCTTGTTGCTTTCTATGTTTTCAAAGGGGGAAAATCTGCTACCATTCCAGCCACCTCAAGGTTTCAGAATGACATTATAGGACCTGCACTTTTAGATGTGCAAAAACTCCTTGGAGAATACGTGATATGGCTGCAATCGGACAATGTTCAGGAAGGAAGAATGTACTCAAACACATTTGGAAAGCGTTTGCCTTCATTCGTATATCCACAGAGTCAGGTGGATTTGGAGATATTTGAATCTCTGGAAAAAGTAAATAAACACAGCTTGAAAGTGATAGAGGACTTCAGTGCCAATGCTGCTTCCAAATTGTTTGAGCAAGAAATACGTGAAGCGTTTCTTGGGACATTTGGTGGGCTAGGAGCAGCTGGTTTATCTGCTTCACTTTTGACGACTGTGCTGCCGACCACTTTGGAAGATCTTCTTGCTCTTGGTCTTTGCTCAGCTGGCGGGTTTATAGCTATTTCAAAATTTCCAGCTCGTAGGCAAGAGATGATAGAAAAGGTAAAAAGGACTGCGGATGGTTTGGCACGTGAGGTTGAACAGTCCATGCAGAACGATCTTTCAGAAGCCATTGAGAACATGGAAAGGTTTGTGAAAAATGTCAGCCAGCCGTACCAAGATACAGCACAGCAGAGACTAGACAAACTCCTAGAGCTTCAGGATGAAATATCCAATGTTGATAAACAACTACAAACACTACGAATTGAAATCCAAAATCTTCACGTATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009668 GO:0009707 GO:0009791 GO:0009941 GO:0009987 GO:0010027 GO:0010228 GO:0010363 GO:0010941 GO:0016020 GO:0016043 GO:0019867 GO:0022414 GO:0031090 GO:0031347 GO:0031348 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034051 GO:0042170 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0060548 GO:0061024 GO:0061458 GO:0065007 GO:0071840 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900424 GO:1900425 GO:1902477 GO:1902478

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_N TMP-TENI

Protein Analysis

921

Amino Acids

102.61

Weight (kDa)

5.36

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	371 - 545	5.7e-06	Elongation factor Tu GTP binding domain
Dynamin_N	PF00350	372 - 415	3.8e-09	Dynamin family
MMR_HSR1	PF01926	372 - 501	2.6e-12	50S ribosome-binding GTPase
Dynamin_N	PF00350	426 - 501	3e-09	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03160 AT1G03160 AT1G03160 AT1G03160
fragaria_vesca	FvH4_2g23600 FvH4_2g23600 FvH4_2g23600 FvH4_2g23600 FvH4_2g23600
malus_domestica	MD00G1063200.v1.1 MD11G1286100.v1.1 MD11G1311300.v1.1 MD11G1311400.v1.1 MD11G1311600.v1.1 MD11G1311700.v1.1 MD11G1312200.v1.1
prunus_persica	Prupe.8G241300_v2.0.a1
pyrus_communis	pycom11g25360
rosa_chinensis	RchiOBHm_Chr6g0291071
rosa_laevigata	RLG00000012149
rosa_multiflora	Rmu_co8364727.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176400
rosa_rugosa	Rorug06G0217300
rosa_samantha	Rh6AG327500 Rh6BG335000 Rh6CG341200 Rh6DG328500
rosa_wichuraiana	Rw6G028490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	270
Acc36I	ACCTGC	2 cut(s)	714, 2125
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	4 cut(s)	4, 216, 739, 914
AccII	CGCG	1 cut(s)	435
AciI	CCGC	8 cut(s)	79, 82, 157, 360, 378, 450, 2481, 2549
AclI	AACGTT	1 cut(s)	1317
AcoI	YGGCCR	1 cut(s)	343
AcsI	RAATTY	4 cut(s)	893, 1121, 1376, 2501
AcuI	CTGAAG	5 cut(s)	196, 282, 865, 2302, 2675
AcvI	CACGTG	2 cut(s)	1988, 2564
AcyI	GRCGYC	2 cut(s)	217, 267
AfaI	GTAC	7 cut(s)	6, 842, 1383, 1460, 1759, 2198, 2648
AfiI	CCNNNNNNNGG	5 cut(s)	253, 373, 1039, 1372, 2091
AflIII	ACRYGT	3 cut(s)	285, 1588, 1987
AjiI	CACGTC	1 cut(s)	286
AjnI	CCWGG	2 cut(s)	742, 1330
AjuI	GAANNNNNNNTTGG	2 cut(s)	2355, 2387
Alw21I	GWGCWC	1 cut(s)	2001
Alw26I	GTCTC	2 cut(s)	399, 2662
AlwNI	CAGNNNCTG	1 cut(s)	584
AoxI	GGCC	4 cut(s)	343, 361, 375, 1875
ApeKI	GCWGC	9 cut(s)	446, 452, 584, 1028, 1899, 2164, 2330, 2396, 2431
ApoI	RAATTY	4 cut(s)	893, 1121, 1376, 2501
ArsI	GACNNNNNNTTYG	2 cut(s)	880, 912
AseI	ATTAAT	1 cut(s)	1149
Asp700I	GAANNNNTTC	4 cut(s)	651, 791, 2367, 2451
Asp718I	GGTACC	1 cut(s)	4
AspLEI	GCGC	2 cut(s)	219, 435
AspS9I	GGNCC	3 cut(s)	232, 256, 2114
AsuC2I	CCSGG	2 cut(s)	204, 410
AsuHPI	GGTGA	4 cut(s)	145, 859, 1201, 1250
AvaII	GGWCC	3 cut(s)	232, 256, 2114
BanI	GGYRCC	4 cut(s)	4, 216, 739, 914
BanII	GRGCYC	1 cut(s)	2001
BbrPI	CACGTG	2 cut(s)	1988, 2564
BbsI	GAAGAC	2 cut(s)	270, 482
Bbv12I	GWGCWC	1 cut(s)	2001
BbvI	GCAGC	9 cut(s)	458, 464, 571, 1015, 1911, 2151, 2317, 2408, 2418
BceAI	ACGGC	6 cut(s)	330, 358, 373, 572, 736, 2629
BcgI	CGANNNNNNTGC	4 cut(s)	1656, 1690, 2413, 2447
BciT130I	CCWGG	2 cut(s)	744, 1332
BcnI	CCSGG	2 cut(s)	204, 410
BcoDI	GTCTC	2 cut(s)	399, 2662
BfaI	CTAG	6 cut(s)	561, 765, 1787, 2390, 2672, 2684
BfoI	RGCGCY	1 cut(s)	220
BfuAI	ACCTGC	2 cut(s)	714, 2125
BglII	AGATCT	2 cut(s)	755, 2449
BlpI	GCTNAGC	1 cut(s)	2473
Bme1390I	CCNGG	4 cut(s)	204, 410, 744, 1332
Bme18I	GGWCC	3 cut(s)	232, 256, 2114
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	3 cut(s)	232, 256, 2114
BmiI	GGNNCC	6 cut(s)	6, 218, 234, 258, 741, 916
BmrFI	CCNGG	4 cut(s)	204, 410, 744, 1332
BmrI	ACTGGG	1 cut(s)	190
BmsI	GCATC	5 cut(s)	571, 789, 802, 1054, 1270
BmuI	ACTGGG	1 cut(s)	190
BoxI	GACNNNNGTC	1 cut(s)	486
BpiI	GAAGAC	2 cut(s)	270, 482
BpmI	CTGGAG	2 cut(s)	583, 974
Bpu1102I	GCTNAGC	1 cut(s)	2473
BpuEI	CTTGAG	4 cut(s)	1553, 1646, 1739, 2074
BpuMI	CCSGG	2 cut(s)	204, 410
BsaAI	YACGTR	5 cut(s)	1988, 2155, 2360, 2564, 2758
BsaBI	GATNNNNATC	1 cut(s)	1512
BsaHI	GRCGYC	2 cut(s)	217, 267
BsaI	GGTCTC	1 cut(s)	399
BsaJI	CCNNGG	5 cut(s)	202, 484, 918, 1371, 2143
BsaXI	ACNNNNNCTCC	6 cut(s)	27, 57, 1034, 1064, 2139, 2169
Bsc4I	CCNNNNNNNGG	5 cut(s)	253, 373, 1039, 1372, 2091
Bse1I	ACTGG	3 cut(s)	196, 957, 1101
Bse3DI	GCAATG	2 cut(s)	1797, 1938
Bse8I	GATNNNNATC	1 cut(s)	1512
BseBI	CCWGG	2 cut(s)	744, 1332
BseDI	CCNNGG	5 cut(s)	202, 484, 918, 1371, 2143
BseGI	GGATG	6 cut(s)	804, 871, 1240, 1261, 2557, 2701
BseJI	GATNNNNATC	1 cut(s)	1512
BseLI	CCNNNNNNNGG	5 cut(s)	253, 373, 1039, 1372, 2091
BseMI	GCAATG	2 cut(s)	1797, 1938
BseMII	CTCAG	6 cut(s)	420, 766, 1218, 1478, 1703, 2487
BseNI	ACTGG	3 cut(s)	196, 957, 1101
BseRI	GAGGAG	2 cut(s)	356, 1058
BseX3I	CGGCCG	1 cut(s)	343
BseXI	GCAGC	9 cut(s)	458, 464, 571, 1015, 1911, 2151, 2317, 2408, 2418
BseYI	CCCAGC	3 cut(s)	174, 180, 938
BsgI	GTGCAG	3 cut(s)	590, 1596, 2103
Bsh1236I	CGCG	1 cut(s)	435
Bsh1285I	CGRYCG	2 cut(s)	346, 1423
BshFI	GGCC	4 cut(s)	345, 363, 377, 1877
BshNI	GGYRCC	4 cut(s)	4, 216, 739, 914
BsiEI	CGRYCG	2 cut(s)	346, 1423
BsiHKAI	GWGCWC	1 cut(s)	2001
BsiSI	CCGG	2 cut(s)	204, 409
BslFI	GGGAC	2 cut(s)	218, 2389
BslI	CCNNNNNNNGG	5 cut(s)	253, 373, 1039, 1372, 2091
BsmAI	GTCTC	2 cut(s)	399, 2662
BsmFI	GGGAC	2 cut(s)	218, 2389
BsmI	GAATGC	1 cut(s)	1525
BsnI	GGCC	4 cut(s)	345, 363, 377, 1877
Bso31I	GGTCTC	1 cut(s)	399
Bsp1286I	GDGCHC	1 cut(s)	2001
Bsp1407I	TGTACA	1 cut(s)	840
Bsp143I	GATC	9 cut(s)	423, 708, 755, 989, 1206, 1420, 2032, 2449, 2590
Bsp1720I	GCTNAGC	1 cut(s)	2473
BspACI	CCGC	8 cut(s)	79, 82, 157, 360, 378, 450, 2481, 2549
BspANI	GGCC	4 cut(s)	345, 363, 377, 1877
BspCNI	CTCAG	6 cut(s)	421, 765, 1219, 1477, 1702, 2486
BspFNI	CGCG	1 cut(s)	435
BspHI	TCATGA	1 cut(s)	1525
BspLI	GGNNCC	6 cut(s)	6, 218, 234, 258, 741, 916
BspMI	ACCTGC	2 cut(s)	714, 2125
BspT107I	GGYRCC	4 cut(s)	4, 216, 739, 914
BspTNI	GGTCTC	1 cut(s)	399
BsrDI	GCAATG	2 cut(s)	1797, 1938
BsrGI	TGTACA	1 cut(s)	840
BsrI	ACTGG	3 cut(s)	196, 957, 1101
BssECI	CCNNGG	5 cut(s)	202, 484, 918, 1371, 2143
BssMI	GATC	9 cut(s)	423, 708, 755, 989, 1206, 1420, 2032, 2449, 2590
BssNI	GRCGYC	2 cut(s)	217, 267
BssT1I	CCWWGG	3 cut(s)	484, 918, 2143
Bst2UI	CCWGG	2 cut(s)	744, 1332
Bst4CI	ACNGT	5 cut(s)	934, 1144, 1638, 2428, 2577
Bst6I	CTCTTC	1 cut(s)	1173
BstACI	GRCGYC	2 cut(s)	217, 267
BstAPI	GCANNNNNTGC	3 cut(s)	458, 584, 1619
BstAUI	TGTACA	1 cut(s)	840
BstBAI	YACGTR	5 cut(s)	1988, 2155, 2360, 2564, 2758
BstC8I	GCNNGC	2 cut(s)	2479, 2642
BstDEI	CTNAG	6 cut(s)	429, 752, 1227, 1464, 1689, 2473
BstENI	CCTNNNNNAGG	2 cut(s)	371, 1370
BstF5I	GGATG	6 cut(s)	804, 871, 1240, 1261, 2557, 2701
BstFNI	CGCG	1 cut(s)	435
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	2 cut(s)	219, 435
BstKTI	GATC	9 cut(s)	426, 711, 758, 992, 1209, 1423, 2035, 2452, 2593
BstMAI	GTCTC	2 cut(s)	399, 2662
BstMBI	GATC	9 cut(s)	423, 708, 755, 989, 1206, 1420, 2032, 2449, 2590
BstMCI	CGRYCG	2 cut(s)	346, 1423
BstMWI	GCNNNNNNNGC	9 cut(s)	216, 452, 458, 584, 593, 1619, 1628, 2330, 2478
BstNI	CCWGG	2 cut(s)	744, 1332
BstNSI	RCATGY	1 cut(s)	1592
BstPAI	GACNNNNGTC	1 cut(s)	486
BstSCI	CCNGG	4 cut(s)	202, 408, 742, 1330
BstUI	CGCG	1 cut(s)	435
BstV1I	GCAGC	9 cut(s)	458, 464, 571, 1015, 1911, 2151, 2317, 2408, 2418
BstV2I	GAAGAC	2 cut(s)	270, 482
BstX2I	RGATCY	2 cut(s)	755, 2449
BstYI	RGATCY	2 cut(s)	755, 2449
BstZI	CGGCCG	1 cut(s)	343
BsuRI	GGCC	4 cut(s)	345, 363, 377, 1877
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	6 cut(s)	804, 871, 1240, 1261, 2557, 2701
BtsI	GCAGTG	2 cut(s)	1475, 1923
BtsIMutI	CAGTG	5 cut(s)	1034, 1475, 1697, 1923, 2326
BveI	ACCTGC	2 cut(s)	714, 2125
Cac8I	GCNNGC	2 cut(s)	2479, 2642
CaiI	CAGNNNCTG	1 cut(s)	584
CciI	TCATGA	1 cut(s)	1525
CfoI	GCGC	2 cut(s)	219, 435
Cfr13I	GGNCC	3 cut(s)	232, 256, 2114
CseI	GACGC	1 cut(s)	584
Csp6I	GTAC	7 cut(s)	5, 841, 1382, 1459, 1758, 2197, 2647
CviAII	CATG	5 cut(s)	844, 1526, 1589, 2581, 2614
CviQI	GTAC	7 cut(s)	5, 841, 1382, 1459, 1758, 2197, 2647
DdeI	CTNAG	6 cut(s)	429, 752, 1227, 1464, 1689, 2473
DinI	GGCGCC	1 cut(s)	218
DpnI	GATC	9 cut(s)	425, 710, 757, 991, 1208, 1422, 2034, 2451, 2592
DpnII	GATC	9 cut(s)	423, 708, 755, 989, 1206, 1420, 2032, 2449, 2590
DraI	TTTAAA	1 cut(s)	679
EaeI	YGGCCR	1 cut(s)	343
EagI	CGGCCG	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	1173
EarI	CTCTTC	1 cut(s)	1173
Ecl136II	GAGCTC	1 cut(s)	1999
EclXI	CGGCCG	1 cut(s)	343
Eco130I	CCWWGG	3 cut(s)	484, 918, 2143
Eco24I	GRGCYC	1 cut(s)	2001
Eco31I	GGTCTC	1 cut(s)	399
Eco32I	GATATC	3 cut(s)	442, 1172, 1510
Eco47I	GGWCC	3 cut(s)	232, 256, 2114
Eco52I	CGGCCG	1 cut(s)	343
Eco53kI	GAGCTC	1 cut(s)	1999
Eco57I	CTGAAG	5 cut(s)	196, 282, 865, 2302, 2675
Eco72I	CACGTG	2 cut(s)	1988, 2564
EcoICRI	GAGCTC	1 cut(s)	1999
EcoNI	CCTNNNNNAGG	2 cut(s)	371, 1370
EcoO109I	RGGNCCY	2 cut(s)	232, 2114
EcoRII	CCWGG	2 cut(s)	742, 1330
EcoRV	GATATC	3 cut(s)	442, 1172, 1510
EcoT14I	CCWWGG	3 cut(s)	484, 918, 2143
EcoT38I	GRGCYC	1 cut(s)	2001
EgeI	GGCGCC	1 cut(s)	218
EheI	GGCGCC	1 cut(s)	218
ErhI	CCWWGG	3 cut(s)	484, 918, 2143
FaeI	CATG	5 cut(s)	847, 1529, 1592, 2584, 2617
FalI	AAGNNNNNCTT	6 cut(s)	1856, 1888, 2355, 2387, 2439, 2471
FaqI	GGGAC	2 cut(s)	218, 2389
FatI	CATG	5 cut(s)	843, 1525, 1588, 2580, 2613
FauI	CCCGC	3 cut(s)	86, 164, 2474
FokI	GGATG	6 cut(s)	811, 878, 1247, 1248, 2564, 2708
FriOI	GRGCYC	1 cut(s)	2001
FspBI	CTAG	6 cut(s)	561, 765, 1787, 2390, 2672, 2684
GlaI	GCGC	2 cut(s)	218, 434
GsaI	CCCAGC	3 cut(s)	178, 184, 942
GsuI	CTGGAG	2 cut(s)	583, 974
HaeII	RGCGCY	1 cut(s)	220
HaeIII	GGCC	4 cut(s)	345, 363, 377, 1877
HapII	CCGG	2 cut(s)	204, 409
HgaI	GACGC	1 cut(s)	584
HhaI	GCGC	2 cut(s)	219, 435
Hin1I	GRCGYC	2 cut(s)	217, 267
Hin1II	CATG	5 cut(s)	847, 1529, 1592, 2584, 2617
Hin6I	GCGC	2 cut(s)	217, 433
HinP1I	GCGC	2 cut(s)	217, 433
HincII	GTYRAC	1 cut(s)	1752
HindII	GTYRAC	1 cut(s)	1752
HinfI	GANTC	7 cut(s)	328, 469, 536, 1685, 1956, 2245, 2270
HpaII	CCGG	2 cut(s)	204, 409
HphI	GGTGA	4 cut(s)	145, 859, 1201, 1250
Hpy166II	GTNNAC	3 cut(s)	841, 1461, 1752
Hpy8I	GTNNAC	3 cut(s)	841, 1461, 1752
Hpy99I	CGWCG	4 cut(s)	108, 284, 287, 344
HpyAV	CCTTC	9 cut(s)	28, 602, 781, 1222, 1298, 1463, 1532, 2180, 2235
HpyCH4III	ACNGT	5 cut(s)	934, 1144, 1638, 2428, 2577
HpyCH4IV	ACGT	8 cut(s)	267, 285, 1317, 1987, 2154, 2359, 2563, 2757
HpyF10VI	GCNNNNNNNGC	9 cut(s)	216, 452, 458, 584, 593, 1619, 1628, 2330, 2478
HpyF3I	CTNAG	6 cut(s)	429, 752, 1227, 1464, 1689, 2473
HpySE526I	ACGT	8 cut(s)	267, 285, 1317, 1987, 2154, 2359, 2563, 2757
Hsp92I	GRCGYC	2 cut(s)	217, 267
Hsp92II	CATG	5 cut(s)	847, 1529, 1592, 2584, 2617
HspAI	GCGC	2 cut(s)	217, 433
KasI	GGCGCC	1 cut(s)	216
KpnI	GGTACC	1 cut(s)	8
Kzo9I	GATC	9 cut(s)	423, 708, 755, 989, 1206, 1420, 2032, 2449, 2590
LmnI	GCTCC	5 cut(s)	608, 611, 1300, 1996, 2393
Lsp1109I	GCAGC	9 cut(s)	458, 464, 571, 1015, 1911, 2151, 2317, 2408, 2418
LweI	GCATC	5 cut(s)	571, 789, 802, 1054, 1270
MaeI	CTAG	6 cut(s)	561, 765, 1787, 2390, 2672, 2684
MaeII	ACGT	8 cut(s)	267, 285, 1317, 1987, 2154, 2359, 2563, 2757
MaeIII	GTNAC	6 cut(s)	703, 775, 1050, 1591, 1840, 1983
MalI	GATC	9 cut(s)	425, 710, 757, 991, 1208, 1422, 2034, 2451, 2592
MboI	GATC	9 cut(s)	423, 708, 755, 989, 1206, 1420, 2032, 2449, 2590
MfeI	CAATTG	2 cut(s)	251, 1803
MflI	RGATCY	2 cut(s)	755, 2449
MhlI	GDGCHC	1 cut(s)	2001
Mly113I	GGCGCC	1 cut(s)	217
MlyI	GAGTC	1 cut(s)	2254
MmeI	TCCRAC	4 cut(s)	303, 382, 504, 518
MroXI	GAANNNNTTC	4 cut(s)	651, 791, 2367, 2451
MseI	TTAA	6 cut(s)	678, 948, 1125, 1149, 1305, 1430
MslI	CAYNNNNRTG	2 cut(s)	518, 1266
MspA1I	CMGCKG	2 cut(s)	2399, 2477
MspI	CCGG	2 cut(s)	204, 409
MspR9I	CCNGG	4 cut(s)	204, 410, 744, 1332
MunI	CAATTG	2 cut(s)	251, 1803
Mva1269I	GAATGC	1 cut(s)	1525
MvaI	CCWGG	2 cut(s)	744, 1332
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	9 cut(s)	216, 452, 458, 584, 593, 1619, 1628, 2330, 2478
NarI	GGCGCC	1 cut(s)	217
NciI	CCSGG	2 cut(s)	204, 410
NdeII	GATC	9 cut(s)	423, 708, 755, 989, 1206, 1420, 2032, 2449, 2590
NlaIII	CATG	5 cut(s)	847, 1529, 1592, 2584, 2617
NlaIV	GGNNCC	6 cut(s)	6, 218, 234, 258, 741, 916
NmuCI	GTSAC	5 cut(s)	703, 1050, 1591, 1840, 1983
NspI	RCATGY	1 cut(s)	1592
PagI	TCATGA	1 cut(s)	1525
PciI	ACATGT	1 cut(s)	1588
PctI	GAATGC	1 cut(s)	1525
PdmI	GAANNNNTTC	4 cut(s)	651, 791, 2367, 2451
PfeI	GAWTC	6 cut(s)	328, 469, 536, 1685, 1956, 2270
Ple19I	CGATCG	1 cut(s)	1423
PleI	GAGTC	1 cut(s)	2253
PluTI	GGCGCC	1 cut(s)	220
PmaCI	CACGTG	2 cut(s)	1988, 2564
PmlI	CACGTG	2 cut(s)	1988, 2564
PpsI	GAGTC	1 cut(s)	2253
Ppu21I	YACGTR	5 cut(s)	1988, 2155, 2360, 2564, 2758
PpuMI	RGGWCCY	2 cut(s)	232, 2114
PscI	ACATGT	1 cut(s)	1588
PshAI	GACNNNNGTC	1 cut(s)	486
PshBI	ATTAAT	1 cut(s)	1149
Psp124BI	GAGCTC	1 cut(s)	2001
Psp1406I	AACGTT	1 cut(s)	1317
Psp5II	RGGWCCY	2 cut(s)	232, 2114
Psp6I	CCWGG	2 cut(s)	742, 1330
PspCI	CACGTG	2 cut(s)	1988, 2564
PspFI	CCCAGC	3 cut(s)	174, 180, 938
PspGI	CCWGG	2 cut(s)	742, 1330
PspN4I	GGNNCC	6 cut(s)	6, 218, 234, 258, 741, 916
PspPI	GGNCC	3 cut(s)	232, 256, 2114
PspPPI	RGGWCCY	2 cut(s)	232, 2114
PstNI	CAGNNNCTG	1 cut(s)	584
PsuI	RGATCY	2 cut(s)	755, 2449
PvuI	CGATCG	1 cut(s)	1423
PvuII	CAGCTG	2 cut(s)	2399, 2477
RsaI	GTAC	7 cut(s)	6, 842, 1383, 1460, 1759, 2198, 2648
RsaNI	GTAC	7 cut(s)	5, 841, 1382, 1459, 1758, 2197, 2647
RseI	CAYNNNNRTG	2 cut(s)	518, 1266
SacI	GAGCTC	1 cut(s)	2001
SaqAI	TTAA	6 cut(s)	678, 948, 1125, 1149, 1305, 1430
Sau3AI	GATC	9 cut(s)	423, 708, 755, 989, 1206, 1420, 2032, 2449, 2590
Sau96I	GGNCC	3 cut(s)	232, 256, 2114
SchI	GAGTC	1 cut(s)	2254
ScrFI	CCNGG	4 cut(s)	204, 410, 744, 1332
SduI	GDGCHC	1 cut(s)	2001
SfaNI	GCATC	5 cut(s)	571, 789, 802, 1054, 1270
SfoI	GGCGCC	1 cut(s)	218
SinI	GGWCC	3 cut(s)	232, 256, 2114
SmiMI	CAYNNNNRTG	2 cut(s)	518, 1266
SmlI	CTYRAG	4 cut(s)	1532, 1625, 1718, 2089
SmoI	CTYRAG	4 cut(s)	1532, 1625, 1718, 2089
SsiI	CCGC	8 cut(s)	79, 82, 157, 360, 378, 450, 2481, 2549
SspDI	GGCGCC	1 cut(s)	216
SspMI	CTAG	6 cut(s)	561, 765, 1787, 2390, 2672, 2684
SstI	GAGCTC	1 cut(s)	2001
StyD4I	CCNGG	4 cut(s)	202, 408, 742, 1330
StyI	CCWWGG	3 cut(s)	484, 918, 2143
TaaI	ACNGT	5 cut(s)	934, 1144, 1638, 2428, 2577
TaiI	ACGT	8 cut(s)	270, 288, 1320, 1990, 2157, 2362, 2566, 2760
TaqI	TCGA	3 cut(s)	300, 339, 978
TatI	WGTACW	3 cut(s)	840, 1757, 2196
TauI	GCSGC	4 cut(s)	84, 363, 380, 452
TfiI	GAWTC	6 cut(s)	328, 469, 536, 1685, 1956, 2270
Tru1I	TTAA	6 cut(s)	678, 948, 1125, 1149, 1305, 1430
Tru9I	TTAA	6 cut(s)	678, 948, 1125, 1149, 1305, 1430
TscAI	CASTG	5 cut(s)	1041, 1475, 1697, 1923, 2326
TseFI	GTSAC	5 cut(s)	703, 1050, 1591, 1840, 1983
TseI	GCWGC	9 cut(s)	446, 452, 584, 1028, 1899, 2164, 2330, 2396, 2431
Tsp45I	GTSAC	5 cut(s)	703, 1050, 1591, 1840, 1983
TspDTI	ATGAA	8 cut(s)	705, 882, 964, 1328, 1540, 1790, 2217, 2712
TspRI	CASTG	5 cut(s)	1041, 1475, 1697, 1923, 2326
VpaK11BI	GGWCC	3 cut(s)	232, 256, 2114
VspI	ATTAAT	1 cut(s)	1149
XagI	CCTNNNNNAGG	2 cut(s)	371, 1370
XapI	RAATTY	4 cut(s)	893, 1121, 1376, 2501
XceI	RCATGY	1 cut(s)	1592
XcmI	CCANNNNNNNNNTGG	3 cut(s)	203, 1870, 2611
XmnI	GAANNNNTTC	4 cut(s)	651, 791, 2367, 2451
XspI	CTAG	6 cut(s)	561, 765, 1787, 2390, 2672, 2684
ZraI	GACGTC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.