Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005859

Physical Location & Seq

Genomic Coordinates Reverse (-)

42385823 .. 42389118

Gene Structure 3296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1311400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGCTTAATGGTCGTGATTCAAGCGGCGGCAGGCTCTATGAAGCCGCCTGTAAGCTGAAGTCGGTGATTAGAGACCGCGCCTACTTGTTGATCTCCGAGAGGGTCGATATCGCCGCCGCAGCTAATGCCAGTGGAGTTTTGCTCTCCGATCAAGTGATGTGTTTTTTGGTAACGGAGGTGAATGATGGGTTTGTTTCTTCTCACATGGGTCTTCCTACCATTGTAGCAAGAAGCACAATGATGGCTTCTAAATCCGATTCGGTTGTCCTTCCTTTGGTAGCAAGATATGTGCAAGATATAGATGGTGCCATAAATGCATCCAACTCTGAAGGAGCTGACTTTCTTATATACGATATTGCCGGACAGGAAAATGTTCTTCTTATTGATATGGAGGAGGTTTCACTTCTCGTTGATGCGGTTTCTCAAATTGATGAGCCATTTTTGCTGGTTATAGTGGTAATTGTGGTGAAGTTAACTCTGGCAAGTCAACTGTTATTAATGCCCTTCTCGGGAATAAACATCTCACGGTATACTGAGATGGATGCTGGTGAGGAACAGCGTTGTGAAAGGCCTCCAGATGGTCAATATATATGCTACATTCCTGCTCCGATTCTTAAAGAAATGAACGTTGTTGATACACCTGGAACTAATGTGATTCTCCAAAGGCAACAACGCCTTACTGAGGAATTTGTGCCCCGTGCTGATTTGCTTCTTTTTGTTGCGTTTCTTCGTTATACTCAGCAACGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009668 GO:0009707 GO:0009791 GO:0009941 GO:0009987 GO:0010027 GO:0010228 GO:0010363 GO:0010941 GO:0016020 GO:0016043 GO:0019867 GO:0022414 GO:0031090 GO:0031347 GO:0031348 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034051 GO:0042170 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0060548 GO:0061024 GO:0061458 GO:0065007 GO:0071840 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900424 GO:1900425 GO:1902477 GO:1902478

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_N TMP-TENI

Protein Analysis

251

Amino Acids

27.58

Weight (kDa)

4.6

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03160 AT1G03160 AT1G03160 AT1G03160
fragaria_vesca	FvH4_2g23600 FvH4_2g23600 FvH4_2g23600 FvH4_2g23600 FvH4_2g23600
malus_domestica	MD00G1063200.v1.1 MD11G1286100.v1.1 MD11G1311300.v1.1 MD11G1311400.v1.1 MD11G1311600.v1.1 MD11G1311700.v1.1 MD11G1312200.v1.1
prunus_persica	Prupe.8G241300_v2.0.a1
pyrus_communis	pycom11g25360
rosa_chinensis	RchiOBHm_Chr6g0291071
rosa_laevigata	RLG00000012149
rosa_multiflora	Rmu_co8364727.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176400
rosa_rugosa	Rorug06G0217300
rosa_samantha	Rh6AG327500 Rh6BG335000 Rh6CG341200 Rh6DG328500
rosa_wichuraiana	Rw6G028490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	530
AccII	CGCG	1 cut(s)	78
AciI	CCGC	7 cut(s)	24, 27, 45, 76, 114, 117, 416
AclI	AACGTT	1 cut(s)	627
AcsI	RAATTY	1 cut(s)	686
AcuI	CTGAAG	2 cut(s)	77, 348
AfiI	CCNNNNNNNGG	4 cut(s)	274, 509, 578, 682
AgsI	TTSAA	1 cut(s)	21
AjnI	CCWGG	1 cut(s)	640
AluBI	AGCT	3 cut(s)	55, 122, 335
AluI	AGCT	3 cut(s)	55, 122, 335
Alw26I	GTCTC	1 cut(s)	66
Ama87I	CYCGRG	1 cut(s)	508
AoxI	GGCC	1 cut(s)	569
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	686
AseI	ATTAAT	1 cut(s)	497
Asp700I	GAANNNNTTC	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	80
AsuHPI	GGTGA	4 cut(s)	76, 190, 478, 560
AvaI	CYCGRG	1 cut(s)	508
BaeGI	GKGCMC	1 cut(s)	696
BanI	GGYRCC	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	5 cut(s)	179, 235, 296, 532, 572
BciT130I	CCWGG	1 cut(s)	642
BcoDI	GTCTC	1 cut(s)	66
BisI	GCNGC	6 cut(s)	25, 28, 45, 114, 117, 120
BlsI	GCNGC	6 cut(s)	26, 29, 46, 115, 118, 121
Bme1390I	CCNGG	1 cut(s)	642
BmeT110I	CYCGRG	1 cut(s)	508
BmiI	GGNNCC	1 cut(s)	307
BmrFI	CCNGG	1 cut(s)	642
BmsI	GCATC	3 cut(s)	326, 403, 532
BpiI	GAAGAC	1 cut(s)	203
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
BpmI	CTGGAG	1 cut(s)	558
BsaI	GGTCTC	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	4 cut(s)	274, 509, 578, 682
Bse1I	ACTGG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	642
BseGI	GGATG	2 cut(s)	317, 547
BseLI	CCNNNNNNNGG	4 cut(s)	274, 509, 578, 682
BseMII	CTCAG	3 cut(s)	525, 672, 752
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	407
BseSI	GKGCMC	1 cut(s)	696
BseXI	GCAGC	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	571
BshNI	GGYRCC	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	508
BsiSI	CCGG	1 cut(s)	360
BslI	CCNNNNNNNGG	4 cut(s)	274, 509, 578, 682
BsmAI	GTCTC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	571
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	696
Bsp143I	GATC	2 cut(s)	90, 148
BspACI	CCGC	7 cut(s)	24, 27, 45, 76, 114, 117, 416
BspANI	GGCC	1 cut(s)	571
BspCNI	CTCAG	3 cut(s)	526, 673, 751
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	307
BspT107I	GGYRCC	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	129
BssMI	GATC	2 cut(s)	90, 148
BssNAI	GTATAC	1 cut(s)	531
Bst1107I	GTATAC	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	642
Bst4CI	ACNGT	2 cut(s)	492, 528
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	3 cut(s)	534, 681, 738
BstENI	CCTNNNNNAGG	1 cut(s)	680
BstF5I	GGATG	2 cut(s)	317, 547
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	2 cut(s)	93, 151
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	2 cut(s)	90, 148
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 125, 314, 442
BstNI	CCWGG	1 cut(s)	642
BstSCI	CCNGG	1 cut(s)	640
BstSLI	GKGCMC	1 cut(s)	696
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	203
BstZ17I	GTATAC	1 cut(s)	531
BsuRI	GGCC	1 cut(s)	571
BtsCI	GGATG	2 cut(s)	317, 547
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	32
CfoI	GCGC	1 cut(s)	80
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	8 cut(s)	34, 44, 55, 122, 245, 335, 436, 571
CviKI_1	RGCY	8 cut(s)	34, 44, 55, 122, 245, 335, 436, 571
DdeI	CTNAG	3 cut(s)	534, 681, 738
DpnI	GATC	2 cut(s)	92, 150
DpnII	GATC	2 cut(s)	90, 148
Eco147I	AGGCCT	1 cut(s)	571
Eco31I	GGTCTC	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	109
Eco57I	CTGAAG	2 cut(s)	77, 348
Eco88I	CYCGRG	1 cut(s)	508
EcoNI	CCTNNNNNAGG	1 cut(s)	680
EcoRII	CCWGG	1 cut(s)	640
EcoRV	GATATC	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	319
FaeI	CATG	1 cut(s)	208
FatI	CATG	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	530
Fnu4HI	GCNGC	6 cut(s)	25, 28, 45, 114, 117, 120
FokI	GGATG	2 cut(s)	304, 554
Fsp4HI	GCNGC	6 cut(s)	25, 28, 45, 114, 117, 120
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	6 cut(s)	25, 28, 45, 114, 117, 120
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	1 cut(s)	571
HapII	CCGG	1 cut(s)	360
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	208
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	2 cut(s)	474, 488
HindII	GTYRAC	2 cut(s)	474, 488
HinfI	GANTC	4 cut(s)	17, 257, 610, 655
HpaI	GTTAAC	1 cut(s)	474
HpaII	CCGG	1 cut(s)	360
HphI	GGTGA	4 cut(s)	76, 190, 478, 560
Hpy166II	GTNNAC	3 cut(s)	474, 488, 531
Hpy188I	TCNGA	5 cut(s)	97, 148, 256, 328, 609
Hpy188III	TCNNGA	3 cut(s)	14, 510, 575
Hpy8I	GTNNAC	3 cut(s)	474, 488, 531
HpyAV	CCTTC	3 cut(s)	278, 323, 514
HpyCH4III	ACNGT	2 cut(s)	492, 528
HpyCH4IV	ACGT	1 cut(s)	627
HpyCH4V	TGCA	2 cut(s)	292, 317
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 125, 314, 442
HpyF3I	CTNAG	3 cut(s)	534, 681, 738
HpySE526I	ACGT	1 cut(s)	627
Hsp92II	CATG	1 cut(s)	208
HspAI	GCGC	1 cut(s)	78
KspAI	GTTAAC	1 cut(s)	474
Kzo9I	GATC	2 cut(s)	90, 148
LmnI	GCTCC	2 cut(s)	332, 610
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	3 cut(s)	326, 403, 532
MaeII	ACGT	1 cut(s)	627
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	2 cut(s)	92, 150
MboI	GATC	2 cut(s)	90, 148
MboII	GAAGA	4 cut(s)	189, 203, 368, 719
MhlI	GDGCHC	1 cut(s)	696
MluCI	AATT	3 cut(s)	426, 459, 686
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	7 cut(s)	93, 169, 385, 388, 544, 582, 676
Mph1103I	ATGCAT	1 cut(s)	319
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	4 cut(s)	6, 473, 497, 615
MslI	CAYNNNNRTG	1 cut(s)	239
MspI	CCGG	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	642
MvaI	CCWGG	1 cut(s)	642
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	4 cut(s)	119, 125, 314, 442
NdeII	GATC	2 cut(s)	90, 148
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	1 cut(s)	307
NsiI	ATGCAT	1 cut(s)	319
PceI	AGGCCT	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	4 cut(s)	17, 257, 610, 655
PkrI	GCNGC	6 cut(s)	26, 29, 46, 115, 118, 121
PshBI	ATTAAT	1 cut(s)	497
Psp1406I	AACGTT	1 cut(s)	627
Psp6I	CCWGG	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	640
PspN4I	GGNNCC	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	4 cut(s)	6, 473, 497, 615
SatI	GCNGC	6 cut(s)	25, 28, 45, 114, 117, 120
Sau3AI	GATC	2 cut(s)	90, 148
ScrFI	CCNGG	1 cut(s)	642
SduI	GDGCHC	1 cut(s)	696
SetI	ASST	7 cut(s)	57, 124, 180, 337, 399, 630, 643
SfaNI	GCATC	3 cut(s)	326, 403, 532
SmiMI	CAYNNNNRTG	1 cut(s)	239
Sse9I	AATT	3 cut(s)	426, 459, 686
SseBI	AGGCCT	1 cut(s)	571
SsiI	CCGC	7 cut(s)	24, 27, 45, 76, 114, 117, 416
StuI	AGGCCT	1 cut(s)	571
StyD4I	CCNGG	1 cut(s)	640
TaaI	ACNGT	2 cut(s)	492, 528
TaiI	ACGT	1 cut(s)	630
TaqI	TCGA	1 cut(s)	105
TasI	AATT	3 cut(s)	426, 459, 686
TauI	GCSGC	5 cut(s)	27, 30, 47, 116, 119
TfiI	GAWTC	4 cut(s)	17, 257, 610, 655
Tru1I	TTAA	4 cut(s)	6, 473, 497, 615
Tru9I	TTAA	4 cut(s)	6, 473, 497, 615
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	119
TspDTI	ATGAA	2 cut(s)	54, 638
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	136
VspI	ATTAAT	1 cut(s)	497
XagI	CCTNNNNNAGG	1 cut(s)	680
XapI	RAATTY	1 cut(s)	686
XmiI	GTMKAC	1 cut(s)	530
XmnI	GAANNNNTTC	1 cut(s)	372
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.