Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8364727.1

Orthogroup ID

OG0005859

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 520

Gene Structure 520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8364727.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 484 bp

atggtacccctcatttcattccacacctccacaacacaccctctcctactaaccccaacctcaaccctgttcctcccccgccccaaatcccacctcccccgacgaacccacttccccatttcctcaatctcccagaacccaaatcaattcacccgccaaaacccacaaccccaaccccagcccccaagaacccagttccccggtggcttcaggcgcccagaaatcaaggtccccaacatcgtcctccaattggaccctgaagacgtcttggcttccgacgacgtgttgggtttggtcgataaagctgtgtccaaatgggttgggattcttgtcctcgacggccgtgaagctaacggcggccgcctctatgaggccgcctgtaagttgaagtccgtggtcggagaccgggcttacttgttgatctctgagcgcgtggatatcgcagccgcagctaatgcgagtgggattctgctctccgatcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009668 GO:0009707 GO:0009791 GO:0009941 GO:0009987 GO:0010027 GO:0010228 GO:0010363 GO:0010941 GO:0016020 GO:0016043 GO:0019867 GO:0022414 GO:0031090 GO:0031347 GO:0031348 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034051 GO:0042170 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0060548 GO:0061024 GO:0061458 GO:0065007 GO:0071840 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900424 GO:1900425 GO:1902477 GO:1902478

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_N TMP-TENI

Protein Analysis

161

Amino Acids

17.66

Weight (kDa)

9.3

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03160 AT1G03160 AT1G03160 AT1G03160
fragaria_vesca	FvH4_2g23600 FvH4_2g23600 FvH4_2g23600 FvH4_2g23600 FvH4_2g23600
malus_domestica	MD00G1063200.v1.1 MD11G1286100.v1.1 MD11G1311300.v1.1 MD11G1311400.v1.1 MD11G1311600.v1.1 MD11G1311700.v1.1 MD11G1312200.v1.1
prunus_persica	Prupe.8G241300_v2.0.a1
pyrus_communis	pycom11g25360
rosa_chinensis	RchiOBHm_Chr6g0291071
rosa_laevigata	RLG00000012149
rosa_multiflora	Rmu_co8364727.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176400
rosa_rugosa	Rorug06G0217300
rosa_samantha	Rh6AG327500 Rh6BG335000 Rh6CG341200 Rh6DG328500
rosa_wichuraiana	Rw6G028490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	267
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	2 cut(s)	4, 213
AccII	CGCG	1 cut(s)	432
AciI	CCGC	6 cut(s)	79, 154, 357, 361, 375, 447
AcoI	YGGCCR	2 cut(s)	340, 358
AcuI	CTGAAG	2 cut(s)	193, 279
AcyI	GRCGYC	2 cut(s)	214, 264
AfaI	GTAC	1 cut(s)	6
AfiI	CCNNNNNNNGG	2 cut(s)	250, 370
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	1 cut(s)	388
AjiI	CACGTC	1 cut(s)	283
AluBI	AGCT	3 cut(s)	305, 350, 452
AluI	AGCT	3 cut(s)	305, 350, 452
Alw26I	GTCTC	1 cut(s)	396
AoxI	GGCC	3 cut(s)	340, 358, 372
ApeKI	GCWGC	2 cut(s)	443, 449
Asp718I	GGTACC	1 cut(s)	4
AspLEI	GCGC	2 cut(s)	216, 432
AspS9I	GGNCC	2 cut(s)	229, 253
AsuC2I	CCSGG	2 cut(s)	201, 407
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	2 cut(s)	229, 253
BanI	GGYRCC	2 cut(s)	4, 213
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	455, 461
BceAI	ACGGC	3 cut(s)	327, 355, 370
BcnI	CCSGG	2 cut(s)	201, 407
BcoDI	GTCTC	1 cut(s)	396
BfoI	RGCGCY	1 cut(s)	217
BisI	GCNGC	6 cut(s)	358, 361, 375, 444, 447, 450
BlsI	GCNGC	6 cut(s)	359, 362, 376, 445, 448, 451
Bme1390I	CCNGG	2 cut(s)	201, 407
Bme18I	GGWCC	2 cut(s)	229, 253
BmgBI	CACGTC	1 cut(s)	283
BmgT120I	GGNCC	2 cut(s)	229, 253
BmiI	GGNNCC	4 cut(s)	6, 215, 231, 255
BmrFI	CCNGG	2 cut(s)	201, 407
BmrI	ACTGGG	1 cut(s)	187
BmuI	ACTGGG	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	267
BpuMI	CCSGG	2 cut(s)	201, 407
BsaHI	GRCGYC	2 cut(s)	214, 264
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	2 cut(s)	199, 393
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 370
Bse1I	ACTGG	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	199, 393
BseLI	CCNNNNNNNGG	2 cut(s)	250, 370
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	193
BseX3I	CGGCCG	2 cut(s)	340, 358
BseXI	GCAGC	2 cut(s)	455, 461
BseYI	CCCAGC	1 cut(s)	177
Bsh1236I	CGCG	1 cut(s)	432
Bsh1285I	CGRYCG	2 cut(s)	343, 361
BshFI	GGCC	3 cut(s)	342, 360, 374
BshNI	GGYRCC	2 cut(s)	4, 213
BsiEI	CGRYCG	2 cut(s)	343, 361
BsiSI	CCGG	2 cut(s)	201, 406
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	250, 370
BsmAI	GTCTC	1 cut(s)	396
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	3 cut(s)	342, 360, 374
Bso31I	GGTCTC	1 cut(s)	396
Bsp143I	GATC	2 cut(s)	420, 478
BspACI	CCGC	6 cut(s)	79, 154, 357, 361, 375, 447
BspANI	GGCC	3 cut(s)	342, 360, 374
BspCNI	CTCAG	1 cut(s)	418
BspFNI	CGCG	1 cut(s)	432
BspLI	GGNNCC	4 cut(s)	6, 215, 231, 255
BspT107I	GGYRCC	2 cut(s)	4, 213
BspTNI	GGTCTC	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	199, 393
BssMI	GATC	2 cut(s)	420, 478
BssNI	GRCGYC	2 cut(s)	214, 264
BstACI	GRCGYC	2 cut(s)	214, 264
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstDEI	CTNAG	1 cut(s)	426
BstDSI	CCRYGG	1 cut(s)	393
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstFNI	CGCG	1 cut(s)	432
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	2 cut(s)	216, 432
BstKTI	GATC	2 cut(s)	423, 481
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	2 cut(s)	420, 478
BstMCI	CGRYCG	2 cut(s)	343, 361
BstMWI	GCNNNNNNNGC	3 cut(s)	213, 449, 455
BstSCI	CCNGG	2 cut(s)	199, 405
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	2 cut(s)	455, 461
BstV2I	GAAGAC	1 cut(s)	267
BstZI	CGGCCG	2 cut(s)	340, 358
BsuRI	GGCC	3 cut(s)	342, 360, 374
BtgI	CCRYGG	1 cut(s)	393
BtrI	CACGTC	1 cut(s)	283
CciNI	GCGGCCGC	1 cut(s)	358
CfoI	GCGC	2 cut(s)	216, 432
Cfr13I	GGNCC	2 cut(s)	229, 253
Csp6I	GTAC	1 cut(s)	5
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	1 cut(s)	426
DinI	GGCGCC	1 cut(s)	215
DpnI	GATC	2 cut(s)	422, 480
DpnII	GATC	2 cut(s)	420, 478
EaeI	YGGCCR	2 cut(s)	340, 358
EagI	CGGCCG	2 cut(s)	340, 358
EclXI	CGGCCG	2 cut(s)	340, 358
Eco31I	GGTCTC	1 cut(s)	396
Eco32I	GATATC	1 cut(s)	439
Eco47I	GGWCC	2 cut(s)	229, 253
Eco52I	CGGCCG	2 cut(s)	340, 358
Eco57I	CTGAAG	2 cut(s)	193, 279
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	439
EgeI	GGCGCC	1 cut(s)	215
EheI	GGCGCC	1 cut(s)	215
FaiI	YATR	1 cut(s)	369
FaqI	GGGAC	1 cut(s)	215
FauI	CCCGC	2 cut(s)	86, 161
Fnu4HI	GCNGC	6 cut(s)	358, 361, 375, 444, 447, 450
Fsp4HI	GCNGC	6 cut(s)	358, 361, 375, 444, 447, 450
GlaI	GCGC	2 cut(s)	215, 431
GluI	GCNGC	6 cut(s)	358, 361, 375, 444, 447, 450
GsaI	CCCAGC	1 cut(s)	181
HaeII	RGCGCY	1 cut(s)	217
HaeIII	GGCC	3 cut(s)	342, 360, 374
HapII	CCGG	2 cut(s)	201, 406
HhaI	GCGC	2 cut(s)	216, 432
Hin1I	GRCGYC	2 cut(s)	214, 264
Hin6I	GCGC	2 cut(s)	214, 430
HinP1I	GCGC	2 cut(s)	214, 430
HinfI	GANTC	2 cut(s)	325, 466
HpaII	CCGG	2 cut(s)	201, 406
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	4 cut(s)	277, 401, 427, 478
Hpy99I	CGWCG	4 cut(s)	105, 281, 284, 341
HpyCH4IV	ACGT	2 cut(s)	264, 282
HpyF10VI	GCNNNNNNNGC	3 cut(s)	213, 449, 455
HpyF3I	CTNAG	1 cut(s)	426
HpySE526I	ACGT	2 cut(s)	264, 282
Hsp92I	GRCGYC	2 cut(s)	214, 264
HspAI	GCGC	2 cut(s)	214, 430
KasI	GGCGCC	1 cut(s)	213
KpnI	GGTACC	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	420, 478
Lsp1109I	GCAGC	2 cut(s)	455, 461
MaeII	ACGT	2 cut(s)	264, 282
MalI	GATC	2 cut(s)	422, 480
MboI	GATC	2 cut(s)	420, 478
MboII	GAAGA	1 cut(s)	272
MfeI	CAATTG	1 cut(s)	248
MluCI	AATT	2 cut(s)	146, 248
Mly113I	GGCGCC	1 cut(s)	214
MmeI	TCCRAC	2 cut(s)	300, 379
MspI	CCGG	2 cut(s)	201, 406
MspR9I	CCNGG	2 cut(s)	201, 407
MunI	CAATTG	1 cut(s)	248
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	3 cut(s)	213, 449, 455
NarI	GGCGCC	1 cut(s)	214
NciI	CCSGG	2 cut(s)	201, 407
NdeII	GATC	2 cut(s)	420, 478
NlaIV	GGNNCC	4 cut(s)	6, 215, 231, 255
NotI	GCGGCCGC	1 cut(s)	358
PfeI	GAWTC	2 cut(s)	325, 466
PkrI	GCNGC	6 cut(s)	359, 362, 376, 445, 448, 451
PluTI	GGCGCC	1 cut(s)	217
PpuMI	RGGWCCY	1 cut(s)	229
Psp5II	RGGWCCY	1 cut(s)	229
PspFI	CCCAGC	1 cut(s)	177
PspN4I	GGNNCC	4 cut(s)	6, 215, 231, 255
PspPI	GGNCC	2 cut(s)	229, 253
PspPPI	RGGWCCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
SatI	GCNGC	6 cut(s)	358, 361, 375, 444, 447, 450
Sau3AI	GATC	2 cut(s)	420, 478
Sau96I	GGNCC	2 cut(s)	229, 253
ScrFI	CCNGG	2 cut(s)	201, 407
SetI	ASST	9 cut(s)	29, 62, 96, 231, 267, 285, 307, 352, 454
SfoI	GGCGCC	1 cut(s)	215
SinI	GGWCC	2 cut(s)	229, 253
Sse9I	AATT	2 cut(s)	146, 248
SsiI	CCGC	6 cut(s)	79, 154, 357, 361, 375, 447
SspDI	GGCGCC	1 cut(s)	213
StyD4I	CCNGG	2 cut(s)	199, 405
TaiI	ACGT	2 cut(s)	267, 285
TaqI	TCGA	2 cut(s)	297, 336
TasI	AATT	2 cut(s)	146, 248
TauI	GCSGC	4 cut(s)	360, 363, 377, 449
TfiI	GAWTC	2 cut(s)	325, 466
TseI	GCWGC	2 cut(s)	443, 449
TspDTI	ATGAA	1 cut(s)	6
TspGWI	ACGGA	1 cut(s)	382
VpaK11BI	GGWCC	2 cut(s)	229, 253
XagI	CCTNNNNNAGG	1 cut(s)	368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
ZraI	GACGTC	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.