Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005859

Physical Location & Seq

Genomic Coordinates Reverse (-)

42385109 .. 42385821

Gene Structure 713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1311300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTTGATATTACCTTTAGCAATCGTATTGCAGAAAAGACCAGTTAATATGATGGTTCTATCTGTTTCAGCTTCTCAATTCTCCTCATGTTGCCTTTATCTAAATGCATTATTTCTGCAGCTTGAGGAAGCTACGTCATTCATAAAGGAGAACACACAGAAACTATTGAATACTGAACATGTGACTTTATTTCCTGTGTCTGCGCGATCTGCTCTTGAAGCGAAACTTTCAGCTTCTATGTTTGGGAAAGATTACGCAGAACTATCAGTATCTGATGCTCAGTGGAAAAGTAGTAATTTCTCTGAACTTGAGAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009668 GO:0009707 GO:0009791 GO:0009941 GO:0009987 GO:0010027 GO:0010228 GO:0010363 GO:0010941 GO:0016020 GO:0016043 GO:0019867 GO:0022414 GO:0031090 GO:0031347 GO:0031348 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034051 GO:0042170 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0060548 GO:0061024 GO:0061458 GO:0065007 GO:0071840 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900424 GO:1900425 GO:1902477 GO:1902478

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_N TMP-TENI

Protein Analysis

107

Amino Acids

11.83

Weight (kDa)

5.27

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03160 AT1G03160 AT1G03160 AT1G03160
fragaria_vesca	FvH4_2g23600 FvH4_2g23600 FvH4_2g23600 FvH4_2g23600 FvH4_2g23600
malus_domestica	MD00G1063200.v1.1 MD11G1286100.v1.1 MD11G1311300.v1.1 MD11G1311400.v1.1 MD11G1311600.v1.1 MD11G1311700.v1.1 MD11G1312200.v1.1
prunus_persica	Prupe.8G241300_v2.0.a1
pyrus_communis	pycom11g25360
rosa_chinensis	RchiOBHm_Chr6g0291071
rosa_laevigata	RLG00000012149
rosa_multiflora	Rmu_co8364727.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176400
rosa_rugosa	Rorug06G0217300
rosa_samantha	Rh6AG327500 Rh6BG335000 Rh6CG341200 Rh6DG328500
rosa_wichuraiana	Rw6G028490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	313
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	2 cut(s)	169, 218
AluBI	AGCT	4 cut(s)	71, 121, 131, 233
AluI	AGCT	4 cut(s)	71, 121, 131, 233
AlwNI	CAGNNNCTG	1 cut(s)	272
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	313
AspLEI	GCGC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	319
BfmI	CTRYAG	1 cut(s)	116
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
BmsI	GCATC	1 cut(s)	265
BpuEI	CTTGAG	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	292
BspFNI	CGCG	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	41
BssMI	GATC	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	1 cut(s)	209
BstMBI	GATC	1 cut(s)	206
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 218
BstNSI	RCATGY	1 cut(s)	182
BstSFI	CTRYAG	1 cut(s)	116
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	287
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	1 cut(s)	205
CviAII	CATG	2 cut(s)	87, 179
CviJI	RGCY	4 cut(s)	71, 121, 131, 233
CviKI_1	RGCY	4 cut(s)	71, 121, 131, 233
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	1 cut(s)	208
DpnII	GATC	1 cut(s)	206
EcoT22I	ATGCAT	1 cut(s)	109
FaeI	CATG	2 cut(s)	90, 182
FaiI	YATR	5 cut(s)	50, 88, 143, 180, 239
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	2 cut(s)	86, 178
Fnu4HI	GCNGC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	1 cut(s)	319
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	2 cut(s)	90, 182
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
Hpy188I	TCNGA	2 cut(s)	274, 304
Hpy188III	TCNNGA	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	3 cut(s)	31, 107, 118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 218
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	90, 182
HspAI	GCGC	1 cut(s)	203
Kzo9I	GATC	1 cut(s)	206
LpnPI	CCDG	2 cut(s)	54, 207
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	319
MaeII	ACGT	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	1 cut(s)	208
MboI	GATC	1 cut(s)	206
MluCI	AATT	3 cut(s)	77, 295, 313
MnlI	CCTC	2 cut(s)	94, 118
Mph1103I	ATGCAT	1 cut(s)	109
MseI	TTAA	1 cut(s)	45
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	2 cut(s)	209, 218
NdeII	GATC	1 cut(s)	206
NlaIII	CATG	2 cut(s)	90, 182
NmuCI	GTSAC	1 cut(s)	181
NsiI	ATGCAT	1 cut(s)	109
NspI	RCATGY	1 cut(s)	182
PciI	ACATGT	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	120
PscI	ACATGT	1 cut(s)	178
PstI	CTGCAG	1 cut(s)	120
PstNI	CAGNNNCTG	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	1 cut(s)	206
SetI	ASST	6 cut(s)	16, 73, 123, 133, 137, 235
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	116
SgeI	CNNG	7 cut(s)	53, 99, 134, 191, 206, 216, 227
SmlI	CTYRAG	2 cut(s)	122, 308
SmoI	CTYRAG	2 cut(s)	122, 308
Sse9I	AATT	3 cut(s)	77, 295, 313
SspMI	CTAG	1 cut(s)	319
TaiI	ACGT	1 cut(s)	137
TasI	AATT	3 cut(s)	77, 295, 313
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	1 cut(s)	287
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	130
TspRI	CASTG	1 cut(s)	287
XapI	RAATTY	1 cut(s)	313
XceI	RCATGY	1 cut(s)	182
XspI	CTAG	1 cut(s)	319
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.