Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005859

Physical Location & Seq

Genomic Coordinates Reverse (-)

42401166 .. 42404006

Gene Structure 2841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1311700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGATGTGTTTTGTTTCTTCTTACATAGGTCTTCCTGCCATTGTAGCAAGAAGCACAATGCTGGCTTCTAAATCCGATTCGGTTGTCCTTCCTTTGGTGGCAAGATATGTGCAAGATATAGATGGTGCCATAAATGCATCCAACTCTGAAGGAGCTGACTTTCTTATGTACGATATTGCCGGACAGGAAAATGTTCTTCTGGCACTCAACAGTCTGTTTAAAACTGTAAAGCTACCAATATTTGTCACGTTCACTTCTTATAACGCCTTATATAAGAAGGAAAATGTGGATGCTCATGATGGTCCCATCGACAGTACAAGTGTTGCTGGTTTTCTTAAATTGGAGAATAGAGAAAAAAAGTTCATAGAAGCAGAAATATCAGTGTTGCTTAAAGCAATAAATGTCATCCAGAAAGCTGCTCCACTGATGGAGGAGGTTTCACTTCTCGTTGATGCGGTTTCTCAAATTGATGAGCCATTTTTGCTGGTTATAGTGAAGAATCATGAGGGGAGTATCGTGGTGAATTTAACTCAGGCAAGTCAACTGTTATCAATGCCCTTCTCGGGAATAAACATCTCACGGTACACTGAGATGGATGCTGGTGAGGAACAGCGTTGTGAAAGGCATCCAGATGGTCAATATATATGCCACCTTCCTGCTCCAATTCTTAAAGAAATGAACGTTGTTGATACACCTGGAACTAATGTGATTCTCCAAAGGCAACAACGCCTTACTGAGGAATTTGTGCCCCGTGCCGATTTGCTTCTTTTTGTCATCTCTGCTGATCGCCCGTTAACTGAAAGTGAGGTTGCGTTTCTTCGTTATACTCAGCAGTGGAAGAAGAAAGTTGTGTTTGTCTTGAATAAATCTGATATCTACCGCAATGCCCATGAGCTTGAGGAAGCTATGTCATTCATCGAGAAGAATGCACAAAAACTTTTGAATACTGAACATGTGACTTTATTTCCTGTGTCTGTGCGCTCTGCTCTTGAAGCAAAACTTTCAGCTTCTATGTTTGGGAAAAATTATGCAGAACTATCAACATCTGATGCTCAGTGGAAAAGTAGTAATTTCTCTGAACTTGAGAATTTCTTGTATAGTTTCTTAGACGGGTCAACAAGCATAGGAATGGAAAGAATGAAAATTAAACTGGAAACACCGGTAGCAATTGCAGAAAAGCTACTTTCTGCTTGTGAAACTCTTGTCCCACAGGACTGCCGATATGCCAAGCAGGACTTGGCCTCAATAAATGATATAGTTGGCAGTGTTAAGAACTATGCAGTTAAGATGGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009668 GO:0009707 GO:0009791 GO:0009941 GO:0009987 GO:0010027 GO:0010228 GO:0010363 GO:0010941 GO:0016020 GO:0016043 GO:0019867 GO:0022414 GO:0031090 GO:0031347 GO:0031348 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034051 GO:0042170 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043901 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0060548 GO:0061024 GO:0061458 GO:0065007 GO:0071840 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900424 GO:1900425 GO:1902477 GO:1902478

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_N TMP-TENI

Protein Analysis

433

Amino Acids

48.19

Weight (kDa)

5.18

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	212 - 289	8.9e-10	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03160 AT1G03160 AT1G03160 AT1G03160
fragaria_vesca	FvH4_2g23600 FvH4_2g23600 FvH4_2g23600 FvH4_2g23600 FvH4_2g23600
malus_domestica	MD00G1063200.v1.1 MD11G1286100.v1.1 MD11G1311300.v1.1 MD11G1311400.v1.1 MD11G1311600.v1.1 MD11G1311700.v1.1 MD11G1312200.v1.1
prunus_persica	Prupe.8G241300_v2.0.a1
pyrus_communis	pycom11g25360
rosa_chinensis	RchiOBHm_Chr6g0291071
rosa_laevigata	RLG00000012149
rosa_multiflora	Rmu_co8364727.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176400
rosa_rugosa	Rorug06G0217300
rosa_samantha	Rh6AG327500 Rh6BG335000 Rh6CG341200 Rh6DG328500
rosa_wichuraiana	Rw6G028490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	125
AciI	CCGC	2 cut(s)	455, 880
AclI	AACGTT	1 cut(s)	681
AcsI	RAATTY	3 cut(s)	523, 740, 1087
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	3 cut(s)	170, 316, 584
AfiI	CCNNNNNNNGG	3 cut(s)	94, 563, 736
AflIII	ACRYGT	1 cut(s)	952
AgeI	ACCGGT	1 cut(s)	1159
AgsI	TTSAA	3 cut(s)	862, 943, 992
AjnI	CCWGG	1 cut(s)	694
AluBI	AGCT	7 cut(s)	155, 232, 416, 895, 905, 1007, 1180
AluI	AGCT	7 cut(s)	155, 232, 416, 895, 905, 1007, 1180
Ama87I	CYCGRG	1 cut(s)	562
AoxI	GGCC	1 cut(s)	1239
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	3 cut(s)	523, 740, 1087
AsiGI	ACCGGT	1 cut(s)	1159
Asp700I	GAANNNNTTC	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	981
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	2 cut(s)	532, 614
AvaI	CYCGRG	1 cut(s)	562
AvaII	GGWCC	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	750
BanI	GGYRCC	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	7 cut(s)	116, 293, 314, 421, 586, 626, 1282
BcgI	CGANNNNNNTGC	2 cut(s)	908, 942
BciT130I	CCWGG	1 cut(s)	696
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
Bme1390I	CCNGG	1 cut(s)	696
Bme18I	GGWCC	1 cut(s)	302
BmeT110I	CYCGRG	1 cut(s)	562
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	127, 304
BmrFI	CCNGG	1 cut(s)	696
BmsI	GCATC	6 cut(s)	146, 280, 442, 586, 634, 1039
BpiI	GAAGAC	1 cut(s)	23
BpuEI	CTTGAG	2 cut(s)	917, 1103
BsaWI	WCCGGW	1 cut(s)	1159
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 563, 736
Bse118I	RCCGGY	1 cut(s)	1159
Bse1I	ACTGG	1 cut(s)	1155
Bse3DI	GCAATG	1 cut(s)	889
BseBI	CCWGG	1 cut(s)	696
BseGI	GGATG	5 cut(s)	137, 295, 405, 601, 625
BseLI	CCNNNNNNNGG	3 cut(s)	94, 563, 736
BseMI	GCAATG	1 cut(s)	889
BseMII	CTCAG	5 cut(s)	545, 579, 726, 842, 1067
BseNI	ACTGG	1 cut(s)	1155
BseRI	GAGGAG	1 cut(s)	446
BseSI	GKGCMC	1 cut(s)	750
BseXI	GCAGC	1 cut(s)	403
BshFI	GGCC	1 cut(s)	1241
BshNI	GGYRCC	1 cut(s)	125
BshTI	ACCGGT	1 cut(s)	1159
BsiHKCI	CYCGRG	1 cut(s)	562
BsiSI	CCGG	2 cut(s)	180, 1160
BslFI	GGGAC	2 cut(s)	288, 1190
BslI	CCNNNNNNNGG	3 cut(s)	94, 563, 736
BsmFI	GGGAC	2 cut(s)	288, 1190
BsmI	GAATGC	1 cut(s)	931
BsnI	GGCC	1 cut(s)	1241
BsoBI	CYCGRG	1 cut(s)	562
Bsp1286I	GDGCHC	1 cut(s)	750
Bsp143I	GATC	1 cut(s)	784
BspACI	CCGC	2 cut(s)	455, 880
BspANI	GGCC	1 cut(s)	1241
BspCNI	CTCAG	5 cut(s)	544, 580, 727, 841, 1066
BspHI	TCATGA	2 cut(s)	295, 502
BspLI	GGNNCC	2 cut(s)	127, 304
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	889
BsrFI	RCCGGY	1 cut(s)	1159
BsrI	ACTGG	1 cut(s)	1155
BssAI	RCCGGY	1 cut(s)	1159
BssMI	GATC	1 cut(s)	784
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	5 cut(s)	212, 226, 314, 546, 582
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	6 cut(s)	531, 588, 735, 828, 1053, 1105
BstENI	CCTNNNNNAGG	1 cut(s)	734
BstF5I	GGATG	5 cut(s)	137, 295, 405, 601, 625
BstHHI	GCGC	1 cut(s)	981
BstKTI	GATC	1 cut(s)	787
BstMBI	GATC	1 cut(s)	784
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 134, 481, 992
BstNI	CCWGG	1 cut(s)	696
BstNSI	RCATGY	1 cut(s)	956
BstSCI	CCNGG	1 cut(s)	694
BstSLI	GKGCMC	1 cut(s)	750
BstV1I	GCAGC	1 cut(s)	403
BstV2I	GAAGAC	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	1241
BtsCI	GGATG	5 cut(s)	137, 295, 405, 601, 625
BtsI	GCAGTG	2 cut(s)	839, 1270
BtsIMutI	CAGTG	6 cut(s)	387, 422, 585, 839, 1061, 1270
Cac8I	GCNNGC	1 cut(s)	63
CciI	TCATGA	2 cut(s)	295, 502
CfoI	GCGC	1 cut(s)	981
Cfr10I	RCCGGY	1 cut(s)	1159
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	3 cut(s)	169, 315, 583
CspAI	ACCGGT	1 cut(s)	1159
CviAII	CATG	4 cut(s)	296, 503, 890, 953
CviQI	GTAC	3 cut(s)	169, 315, 583
DdeI	CTNAG	6 cut(s)	531, 588, 735, 828, 1053, 1105
DpnI	GATC	1 cut(s)	786
DpnII	GATC	1 cut(s)	784
DraI	TTTAAA	1 cut(s)	220
Eco32I	GATATC	1 cut(s)	874
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	168
Eco88I	CYCGRG	1 cut(s)	562
EcoNI	CCTNNNNNAGG	1 cut(s)	734
EcoRII	CCWGG	1 cut(s)	694
EcoRV	GATATC	1 cut(s)	874
EcoT22I	ATGCAT	1 cut(s)	139
FaeI	CATG	4 cut(s)	299, 506, 893, 956
FalI	AAGNNNNNCTT	4 cut(s)	984, 1016, 1220, 1252
FaqI	GGGAC	2 cut(s)	288, 1190
FatI	CATG	4 cut(s)	295, 502, 889, 952
Fnu4HI	GCNGC	1 cut(s)	417
FokI	GGATG	5 cut(s)	124, 302, 392, 608, 612
Fsp4HI	GCNGC	1 cut(s)	417
GlaI	GCGC	1 cut(s)	980
GluI	GCNGC	1 cut(s)	417
HaeIII	GGCC	1 cut(s)	1241
HapII	CCGG	2 cut(s)	180, 1160
HhaI	GCGC	1 cut(s)	981
Hin1II	CATG	4 cut(s)	299, 506, 893, 956
Hin6I	GCGC	1 cut(s)	979
HinP1I	GCGC	1 cut(s)	979
HincII	GTYRAC	3 cut(s)	542, 795, 1116
HindII	GTYRAC	3 cut(s)	542, 795, 1116
HinfI	GANTC	3 cut(s)	77, 499, 709
HpaI	GTTAAC	1 cut(s)	795
HpaII	CCGG	2 cut(s)	180, 1160
HphI	GGTGA	2 cut(s)	532, 614
Hpy166II	GTNNAC	5 cut(s)	252, 542, 585, 795, 1116
Hpy188I	TCNGA	5 cut(s)	76, 148, 871, 1048, 1078
Hpy188III	TCNNGA	8 cut(s)	296, 409, 503, 564, 629, 859, 919, 989
Hpy8I	GTNNAC	5 cut(s)	252, 542, 585, 795, 1116
HpyAV	CCTTC	5 cut(s)	98, 143, 271, 568, 662
HpyCH4III	ACNGT	5 cut(s)	212, 226, 314, 546, 582
HpyCH4IV	ACGT	2 cut(s)	248, 681
HpyCH4V	TGCA	6 cut(s)	112, 137, 929, 1031, 1172, 1280
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 134, 481, 992
HpyF3I	CTNAG	6 cut(s)	531, 588, 735, 828, 1053, 1105
HpySE526I	ACGT	2 cut(s)	248, 681
Hsp92II	CATG	4 cut(s)	299, 506, 893, 956
HspAI	GCGC	1 cut(s)	979
KspAI	GTTAAC	1 cut(s)	795
Kzo9I	GATC	1 cut(s)	784
LmnI	GCTCC	3 cut(s)	152, 424, 664
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	6 cut(s)	146, 280, 442, 586, 634, 1039
MaeII	ACGT	2 cut(s)	248, 681
MaeIII	GTNAC	2 cut(s)	244, 955
MalI	GATC	1 cut(s)	786
MboI	GATC	1 cut(s)	784
MboII	GAAGA	8 cut(s)	9, 23, 188, 508, 809, 850, 853, 934
MfeI	CAATTG	1 cut(s)	1167
MhlI	GDGCHC	1 cut(s)	750
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	8 cut(s)	424, 427, 499, 598, 730, 799, 892, 1252
Mph1103I	ATGCAT	1 cut(s)	139
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	9 cut(s)	219, 336, 390, 527, 669, 794, 1146, 1269, 1284
MslI	CAYNNNNRTG	3 cut(s)	590, 630, 1127
MspI	CCGG	2 cut(s)	180, 1160
MspR9I	CCNGG	1 cut(s)	696
MunI	CAATTG	1 cut(s)	1167
Mva1269I	GAATGC	1 cut(s)	931
MvaI	CCWGG	1 cut(s)	696
MwoI	GCNNNNNNNGC	4 cut(s)	44, 134, 481, 992
NdeII	GATC	1 cut(s)	784
NlaIII	CATG	4 cut(s)	299, 506, 893, 956
NlaIV	GGNNCC	2 cut(s)	127, 304
NmuCI	GTSAC	2 cut(s)	244, 955
NsiI	ATGCAT	1 cut(s)	139
NspI	RCATGY	1 cut(s)	956
PagI	TCATGA	2 cut(s)	295, 502
PciI	ACATGT	1 cut(s)	952
PctI	GAATGC	1 cut(s)	931
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	3 cut(s)	77, 499, 709
PinAI	ACCGGT	1 cut(s)	1159
PkrI	GCNGC	1 cut(s)	418
PscI	ACATGT	1 cut(s)	952
PsiI	TTATAA	1 cut(s)	261
Psp1406I	AACGTT	1 cut(s)	681
Psp6I	CCWGG	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	694
PspN4I	GGNNCC	2 cut(s)	127, 304
PspPI	GGNCC	1 cut(s)	302
RsaI	GTAC	3 cut(s)	170, 316, 584
RsaNI	GTAC	3 cut(s)	169, 315, 583
RseI	CAYNNNNRTG	3 cut(s)	590, 630, 1127
SaqAI	TTAA	9 cut(s)	219, 336, 390, 527, 669, 794, 1146, 1269, 1284
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	1 cut(s)	784
Sau96I	GGNCC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	696
SduI	GDGCHC	1 cut(s)	750
SfaNI	GCATC	6 cut(s)	146, 280, 442, 586, 634, 1039
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	3 cut(s)	590, 630, 1127
SmlI	CTYRAG	2 cut(s)	896, 1082
SmoI	CTYRAG	2 cut(s)	896, 1082
SsiI	CCGC	2 cut(s)	455, 880
SspI	AATATT	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	694
TaaI	ACNGT	5 cut(s)	212, 226, 314, 546, 582
TaiI	ACGT	2 cut(s)	251, 684
TaqI	TCGA	2 cut(s)	309, 918
TatI	WGTACW	1 cut(s)	314
TfiI	GAWTC	3 cut(s)	77, 499, 709
Tru1I	TTAA	9 cut(s)	219, 336, 390, 527, 669, 794, 1146, 1269, 1284
Tru9I	TTAA	9 cut(s)	219, 336, 390, 527, 669, 794, 1146, 1269, 1284
TscAI	CASTG	6 cut(s)	387, 429, 592, 839, 1061, 1270
TseFI	GTSAC	2 cut(s)	244, 955
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	2 cut(s)	244, 955
TspDTI	ATGAA	4 cut(s)	352, 692, 904, 1154
TspRI	CASTG	6 cut(s)	387, 429, 592, 839, 1061, 1270
VpaK11BI	GGWCC	1 cut(s)	302
XagI	CCTNNNNNAGG	1 cut(s)	734
XapI	RAATTY	3 cut(s)	523, 740, 1087
XceI	RCATGY	1 cut(s)	956
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1234
XmnI	GAANNNNTTC	1 cut(s)	192
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.