Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0013614

Physical Location & Seq

Genomic Coordinates Reverse (-)

53302478 .. 53303836

Gene Structure 1359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG328400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTCAAACGCCTAGGTCCACTAATCTGAAAACTGAGAGAGTTCAGTCACAGCCTGAAAGACCAAATCTTCCTACGGAAGAAATGGCACAAGAGAATGCACCTCCACAGAAGAAAAGCAAGGCAAGGAAGAAACGGCCAAGGTACTACACAGCAGTTAGGCGATCTTCACGCATCCGAAACACTGTGACTCCCTCTCAAAACCGGAGCCTACAGCCAGTGCAGATTACAATCAGTGAAAGCGAGAGTGAAAGCGACAGAGAAGAGGAGCCTCCTTGTTTGGAGGAGAATGTGGAGGAGCTGGCTGTTCGTGGTGAGAAAACATTGGATGAAAAAGTGGACTATGCTGTGCAGTTATTGGAGACTATGAGCTCACAGGGTAACAATAGGATCTCTGACACTTCTGAACTCAGATACAGAAGTTTGTACTTTGAGTCCCAAAAGCAGAATGAGAAATTGAAAAAGGAGAACCGTGAGCTTTCTTTGAAGTTGCAAGTTGCTCTTGCCAAAATTGAAGGAGTAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

20.19

Weight (kDa)

8.94

Isoelectric Point (pI)

74.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013614)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23590
malus_domestica	MD07G1082500.v1.1 MD11G1285300.v1.1
prunus_persica	Prupe.2G108100_v2.0.a1 Prupe.2G108100_v2.0.a1 Prupe.8G241200_v2.0.a1
pyrus_communis	pycom07g06590 pycom11g25290
rosa_chinensis	RchiOBHm_Chr6g0291061
rosa_laevigata	RLG00000012150
rosa_multiflora	Rmu_sc0004642.1_g000004
rosa_roxburghii	Rroxscaffold_7G00176410
rosa_rugosa	Rorug06G0217300
rosa_samantha	Rh6AG327400 Rh6BG334900 Rh6CG341100 Rh6DG328400
rosa_wichuraiana	Rw6G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	398
AcoI	YGGCCR	1 cut(s)	137
AfaI	GTAC	2 cut(s)	146, 428
AgsI	TTSAA	3 cut(s)	460, 487, 515
AluBI	AGCT	4 cut(s)	301, 372, 478, 525
AluI	AGCT	4 cut(s)	301, 372, 478, 525
Alw21I	GWGCWC	1 cut(s)	374
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	1 cut(s)	398
AoxI	GGCC	1 cut(s)	137
AspA2I	CCTAGG	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	18
AvrII	CCTAGG	1 cut(s)	14
BaeI	ACNNNNGTAYC	2 cut(s)	406, 439
BanII	GRGCYC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	374
BceAI	ACGGC	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	212
BlnI	CCTAGG	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	2 cut(s)	209, 270
BmsI	GCATC	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	14, 140
BsaWI	WCCGGW	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bse1I	ACTGG	1 cut(s)	218
Bse8I	GATNNNNATC	1 cut(s)	230
BseDI	CCNNGG	2 cut(s)	14, 140
BseGI	GGATG	2 cut(s)	174, 334
BseJI	GATNNNNATC	1 cut(s)	230
BseMII	CTCAG	2 cut(s)	27, 424
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	3 cut(s)	281, 299, 311
BsgI	GTGCAG	2 cut(s)	242, 371
BshFI	GGCC	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	421
BsmAI	GTCTC	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	421
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp143I	GATC	2 cut(s)	164, 390
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	2 cut(s)	28, 423
BspLI	GGNNCC	2 cut(s)	209, 270
BspPI	GGATC	1 cut(s)	398
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	14, 140
BssMI	GATC	2 cut(s)	164, 390
BssT1I	CCWWGG	2 cut(s)	14, 140
Bst4CI	ACNGT	2 cut(s)	187, 473
Bst6I	CTCTTC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	2 cut(s)	36, 410
BstF5I	GGATG	2 cut(s)	174, 334
BstKTI	GATC	2 cut(s)	167, 393
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	2 cut(s)	164, 390
BstSFI	CTRYAG	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	390
BstYI	RGATCY	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	174, 334
BtsIMutI	CAGTG	3 cut(s)	183, 225, 241
Cac8I	GCNNGC	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	145, 427
CviQI	GTAC	2 cut(s)	145, 427
DdeI	CTNAG	2 cut(s)	36, 410
DpnI	GATC	2 cut(s)	166, 392
DpnII	GATC	2 cut(s)	164, 390
EaeI	YGGCCR	1 cut(s)	137
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Ecl136II	GAGCTC	1 cut(s)	372
Eco130I	CCWWGG	2 cut(s)	14, 140
Eco24I	GRGCYC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	372
EcoICRI	GAGCTC	1 cut(s)	372
EcoT14I	CCWWGG	2 cut(s)	14, 140
EcoT38I	GRGCYC	1 cut(s)	374
ErhI	CCWWGG	2 cut(s)	14, 140
FaiI	YATR	2 cut(s)	345, 368
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FaqI	GGGAC	1 cut(s)	421
FokI	GGATG	2 cut(s)	161, 341
FriOI	GRGCYC	1 cut(s)	374
FspBI	CTAG	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	1 cut(s)	205
HinfI	GANTC	2 cut(s)	190, 434
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	21, 340
Hpy188I	TCNGA	5 cut(s)	30, 179, 397, 406, 413
Hpy8I	GTNNAC	2 cut(s)	21, 340
HpyAV	CCTTC	1 cut(s)	509
HpyCH4III	ACNGT	2 cut(s)	187, 473
HpyCH4V	TGCA	4 cut(s)	101, 223, 352, 493
HpyF3I	CTNAG	2 cut(s)	36, 410
Kzo9I	GATC	2 cut(s)	164, 390
LmnI	GCTCC	3 cut(s)	207, 268, 298
LpnPI	CCDG	5 cut(s)	69, 218, 231, 287, 362
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	15
MaeIII	GTNAC	3 cut(s)	48, 187, 380
MalI	GATC	2 cut(s)	166, 392
MboI	GATC	2 cut(s)	164, 390
MboII	GAAGA	6 cut(s)	62, 92, 124, 142, 159, 275
MflI	RGATCY	1 cut(s)	390
MhlI	GDGCHC	1 cut(s)	374
MluCI	AATT	2 cut(s)	455, 510
MlyI	GAGTC	2 cut(s)	184, 443
MnlI	CCTC	6 cut(s)	114, 205, 259, 277, 282, 289
MspI	CCGG	1 cut(s)	205
Mva1269I	GAATGC	1 cut(s)	103
NdeII	GATC	2 cut(s)	164, 390
NlaIV	GGNNCC	2 cut(s)	209, 270
NmuCI	GTSAC	2 cut(s)	48, 187
PctI	GAATGC	1 cut(s)	103
PleI	GAGTC	2 cut(s)	184, 442
PpsI	GAGTC	2 cut(s)	184, 442
Psp124BI	GAGCTC	1 cut(s)	374
PspN4I	GGNNCC	2 cut(s)	209, 270
PspPI	GGNCC	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	390
RsaI	GTAC	2 cut(s)	146, 428
RsaNI	GTAC	2 cut(s)	145, 427
SacI	GAGCTC	1 cut(s)	374
Sau3AI	GATC	2 cut(s)	164, 390
Sau96I	GGNCC	1 cut(s)	18
SchI	GAGTC	2 cut(s)	184, 443
SduI	GDGCHC	1 cut(s)	374
SetI	ASST	7 cut(s)	20, 106, 146, 303, 374, 480, 527
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	212
SinI	GGWCC	1 cut(s)	18
Sse9I	AATT	2 cut(s)	455, 510
SspMI	CTAG	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	374
StyI	CCWWGG	2 cut(s)	14, 140
TaaI	ACNGT	2 cut(s)	187, 473
TasI	AATT	2 cut(s)	455, 510
TatI	WGTACW	1 cut(s)	426
TscAI	CASTG	3 cut(s)	190, 225, 241
TseFI	GTSAC	2 cut(s)	48, 187
Tsp45I	GTSAC	2 cut(s)	48, 187
TspDTI	ATGAA	1 cut(s)	345
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	3 cut(s)	190, 225, 241
VpaK11BI	GGWCC	1 cut(s)	18
XmaJI	CCTAGG	1 cut(s)	14
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.