FvH4_2g24190

Cell wall vacuolar inhibitor of fructosidase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016266
Physical Location & Seq
Reverse (-)
19746240 .. 19746569
330 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24190.t1

Sequence Viewer

Length: 330 bp
ATGGATGAGAATCTCATCGAGCAAACATGCAGAAAGACACCAGACTATGGTACCTGTGTCTCTTGTCTTAAATCGACTGGTGGCAGTAAGATCTATTCTGCAGATCGCATAGGCTTGGCGGAAGTAATGATCGATGTAGTCGGGCTTAGATCAACCACTGTTCTTAACAAAGTTGAGGAGCTTCTTCACAATACACCAGAAGATCCATCTTTGCAACACTGTAGCAAACAATACTCATATATTACATCAACTATGGTTCCGTATGCCAAGAGCTATGCTTATACGAACCCTCGTGCAGCAGGATATTTGATGCATGGCATTCACGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

110

Amino Acids

12.09

Weight (kDa)

6.04

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 4 - 83 1.2e-10 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 50
AccB7I CCANNNNNTGG 1 cut(s) 47
AciI CCGC 1 cut(s) 119
AclWI GGATC 1 cut(s) 197
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 1 cut(s) 47
AluBI AGCT 2 cut(s) 181, 273
AluI AGCT 2 cut(s) 181, 273
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 296
Asp718I GGTACC 1 cut(s) 50
BaeI ACNNNNGTAYC 4 cut(s) 34, 42, 67, 75
BanI GGYRCC 1 cut(s) 50
BauI CACGAG 1 cut(s) 291
BbvI GCAGC 1 cut(s) 308
BccI CCATC 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 1 cut(s) 328
BfmI CTRYAG 2 cut(s) 99, 220
BglII AGATCT 1 cut(s) 90
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
BmiI GGNNCC 2 cut(s) 52, 258
BmsI GCATC 1 cut(s) 300
Bsa29I ATCGAT 1 cut(s) 132
BsaBI GATNNNNATC 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 82
Bse8I GATNNNNATC 1 cut(s) 9
BseCI ATCGAT 1 cut(s) 132
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 82
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 308
BsgI GTGCAG 1 cut(s) 315
BshNI GGYRCC 1 cut(s) 50
BshVI ATCGAT 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 64
BsmI GAATGC 1 cut(s) 318
Bsp143I GATC 5 cut(s) 90, 103, 129, 149, 202
BspACI CCGC 1 cut(s) 119
BspDI ATCGAT 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 52, 258
BspMAI CTGCAG 1 cut(s) 103
BspPI GGATC 1 cut(s) 197
BspT107I GGYRCC 1 cut(s) 50
BsrI ACTGG 1 cut(s) 82
BssMI GATC 5 cut(s) 90, 103, 129, 149, 202
BssSI CACGAG 1 cut(s) 291
Bst2BI CACGAG 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 160, 221
BstDEI CTNAG 1 cut(s) 146
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 5 cut(s) 93, 106, 132, 152, 205
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 5 cut(s) 90, 103, 129, 149, 202
BstNSI RCATGY 1 cut(s) 30
BstSFI CTRYAG 2 cut(s) 99, 220
BstV1I GCAGC 1 cut(s) 308
BstX2I RGATCY 2 cut(s) 90, 202
BstYI RGATCY 2 cut(s) 90, 202
Bsu15I ATCGAT 1 cut(s) 132
BsuTUI ATCGAT 1 cut(s) 132
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 156, 217
ClaI ATCGAT 1 cut(s) 132
Csp6I GTAC 1 cut(s) 51
CviAII CATG 2 cut(s) 27, 314
CviJI RGCY 4 cut(s) 114, 145, 181, 273
CviKI_1 RGCY 4 cut(s) 114, 145, 181, 273
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 1 cut(s) 146
DpnI GATC 5 cut(s) 92, 105, 131, 151, 204
DpnII GATC 5 cut(s) 90, 103, 129, 149, 202
EciI GGCGGA 1 cut(s) 134
EcoT22I ATGCAT 1 cut(s) 315
FaeI CATG 2 cut(s) 30, 317
FatI CATG 2 cut(s) 26, 313
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 297
FspBI CTAG 1 cut(s) 328
GluI GCNGC 1 cut(s) 297
Hin1II CATG 2 cut(s) 30, 317
HinfI GANTC 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 323
HpyCH4III ACNGT 2 cut(s) 160, 221
HpyCH4V TGCA 5 cut(s) 30, 101, 214, 296, 313
HpyF3I CTNAG 1 cut(s) 146
Hsp92II CATG 2 cut(s) 30, 317
KpnI GGTACC 1 cut(s) 54
Kzo9I GATC 5 cut(s) 90, 103, 129, 149, 202
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 5 cut(s) 54, 63, 67, 210, 285
Lsp1109I GCAGC 1 cut(s) 308
LweI GCATC 1 cut(s) 300
MaeI CTAG 1 cut(s) 328
MalI GATC 5 cut(s) 92, 105, 131, 151, 204
MboI GATC 5 cut(s) 90, 103, 129, 149, 202
MboII GAAGA 2 cut(s) 176, 212
MflI RGATCY 2 cut(s) 90, 202
MnlI CCTC 2 cut(s) 169, 300
Mph1103I ATGCAT 1 cut(s) 315
MseI TTAA 2 cut(s) 69, 165
Mva1269I GAATGC 1 cut(s) 318
NdeII GATC 5 cut(s) 90, 103, 129, 149, 202
NlaIII CATG 2 cut(s) 30, 317
NlaIV GGNNCC 2 cut(s) 52, 258
NsiI ATGCAT 1 cut(s) 315
NspI RCATGY 1 cut(s) 30
PctI GAATGC 1 cut(s) 318
PfeI GAWTC 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 47
PkrI GCNGC 1 cut(s) 298
PspN4I GGNNCC 2 cut(s) 52, 258
PstI CTGCAG 1 cut(s) 103
PsuI RGATCY 2 cut(s) 90, 202
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SaqAI TTAA 2 cut(s) 69, 165
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 5 cut(s) 90, 103, 129, 149, 202
SetI ASST 3 cut(s) 56, 183, 275
SfaNI GCATC 1 cut(s) 300
SfcI CTRYAG 2 cut(s) 99, 220
SsiI CCGC 1 cut(s) 119
SspMI CTAG 1 cut(s) 328
TaaI ACNGT 2 cut(s) 160, 221
TaqI TCGA 3 cut(s) 18, 74, 132
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 2 cut(s) 69, 165
Tru9I TTAA 2 cut(s) 69, 165
TscAI CASTG 2 cut(s) 163, 224
TseI GCWGC 1 cut(s) 296
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 2 cut(s) 163, 224
Van91I CCANNNNNTGG 1 cut(s) 47
XceI RCATGY 1 cut(s) 30
XspI CTAG 1 cut(s) 328
Zsp2I ATGCAT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.