Rh7BG357900

Cell wall vacuolar inhibitor of fructosidase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016266
Physical Location & Seq
Reverse (-)
37586639 .. 37606448
19810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG357900.1

Sequence Viewer

Length: 453 bp
ATGGACCAAAATCTTATCGAGGAAACATGCAGAAAGACACCAGACTACGATATATGTCTCTTTTGTCTTAAATCGACCGGTGGTAGTGGGATCTTGACTGCAAATCGCACACGCTTGGCCGACGTAATGATTGATGTAGTCCAGCAGAGATCAATCACTACTATGAACAAAATGAGTGACCTTCTTGGTAATTCACCTGGAGATTTATATCAACCGTTATCTACATGTAATTATAATTACATTACGATCGTAACTCGTTATATCCCGGCGGCCAAGAAGTTAATTTATACGAGTGAGCTTAAGATGGCAAAGAAAATAATGGATAACATTCCAAATGTTGCAAAATCATGTGAGGATTCATTCAGAGGCAAGCTGACTCCTATTGCTGACTTGCATATAGCTGTCCAAAAGGTTGCAGCTATTGCTATAGCAATAATAGGGCAATTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

150

Amino Acids

16.52

Weight (kDa)

8.59

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 4 - 145 3.2e-11 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 234
AciI CCGC 1 cut(s) 269
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 2 cut(s) 117, 270
AflII CTTAAG 1 cut(s) 299
AflIII ACRYGT 1 cut(s) 224
AgeI ACCGGT 1 cut(s) 77
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 4 cut(s) 298, 373, 401, 419
AluI AGCT 4 cut(s) 298, 373, 401, 419
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 1 cut(s) 98
AoxI GGCC 2 cut(s) 117, 270
ApeKI GCWGC 1 cut(s) 416
AsiGI ACCGGT 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 186
AvaII GGWCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 428
BccI CCATC 1 cut(s) 298
BciT130I CCWGG 1 cut(s) 198
BcnI CCSGG 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 62
BfmI CTRYAG 1 cut(s) 426
BfrI CTTAAG 1 cut(s) 299
BisI GCNGC 2 cut(s) 270, 417
BlsI GCNGC 2 cut(s) 271, 418
Bme1390I CCNGG 2 cut(s) 198, 266
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 2 cut(s) 198, 266
BpmI CTGGAG 1 cut(s) 219
BpuMI CCSGG 1 cut(s) 266
BsaBI GATNNNNATC 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 77
Bse118I RCCGGY 1 cut(s) 77
Bse8I GATNNNNATC 1 cut(s) 207
BseBI CCWGG 1 cut(s) 198
BseJI GATNNNNATC 1 cut(s) 207
BseXI GCAGC 1 cut(s) 428
Bsh1285I CGRYCG 2 cut(s) 78, 249
BshFI GGCC 2 cut(s) 119, 272
BshTI ACCGGT 1 cut(s) 77
BsiEI CGRYCG 2 cut(s) 78, 249
BsiSI CCGG 2 cut(s) 78, 266
BsmAI GTCTC 1 cut(s) 62
BsnI GGCC 2 cut(s) 119, 272
Bsp143I GATC 3 cut(s) 90, 149, 246
BspACI CCGC 1 cut(s) 269
BspANI GGCC 2 cut(s) 119, 272
BspPI GGATC 1 cut(s) 98
BspTI CTTAAG 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 77
BssMI GATC 3 cut(s) 90, 149, 246
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 216
BstAFI CTTAAG 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 422
BstC8I GCNNGC 1 cut(s) 371
BstKTI GATC 3 cut(s) 93, 152, 249
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 3 cut(s) 90, 149, 246
BstMCI CGRYCG 2 cut(s) 78, 249
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNI CCWGG 1 cut(s) 198
BstNSI RCATGY 2 cut(s) 30, 228
BstSCI CCNGG 2 cut(s) 196, 264
BstSFI CTRYAG 1 cut(s) 426
BstV1I GCAGC 1 cut(s) 428
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BsuRI GGCC 2 cut(s) 119, 272
Cac8I GCNNGC 1 cut(s) 371
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 4
CspAI ACCGGT 1 cut(s) 77
CviAII CATG 3 cut(s) 27, 225, 348
CviJI RGCY 6 cut(s) 119, 272, 298, 373, 401, 419
CviKI_1 RGCY 6 cut(s) 119, 272, 298, 373, 401, 419
DpnI GATC 3 cut(s) 92, 151, 248
DpnII GATC 3 cut(s) 90, 149, 246
EaeI YGGCCR 2 cut(s) 117, 270
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 196
FaeI CATG 3 cut(s) 30, 228, 351
FatI CATG 3 cut(s) 26, 224, 347
Fnu4HI GCNGC 2 cut(s) 270, 417
Fsp4HI GCNGC 2 cut(s) 270, 417
GluI GCNGC 2 cut(s) 270, 417
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 2 cut(s) 119, 272
HapII CCGG 2 cut(s) 78, 266
Hin1II CATG 3 cut(s) 30, 228, 351
HinfI GANTC 2 cut(s) 356, 376
HpaII CCGG 2 cut(s) 78, 266
HphI GGTGA 1 cut(s) 186
Hpy188I TCNGA 1 cut(s) 365
Hpy188III TCNNGA 1 cut(s) 94
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 191
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 5 cut(s) 30, 101, 341, 394, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 3 cut(s) 30, 228, 351
Kzo9I GATC 3 cut(s) 90, 149, 246
LpnPI CCDG 6 cut(s) 54, 91, 155, 183, 210, 279
Lsp1109I GCAGC 1 cut(s) 428
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 2 cut(s) 176, 250
MalI GATC 3 cut(s) 92, 151, 248
MboI GATC 3 cut(s) 90, 149, 246
MfeI CAATTG 1 cut(s) 443
MflI RGATCY 1 cut(s) 90
MluCI AATT 5 cut(s) 190, 229, 235, 282, 443
MlyI GAGTC 1 cut(s) 370
MnlI CCTC 3 cut(s) 13, 346, 359
MseI TTAA 3 cut(s) 69, 281, 300
MslI CAYNNNNRTG 1 cut(s) 161
MspCI CTTAAG 1 cut(s) 299
MspI CCGG 2 cut(s) 78, 266
MspR9I CCNGG 2 cut(s) 198, 266
MunI CAATTG 1 cut(s) 443
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 422
NciI CCSGG 1 cut(s) 266
NdeII GATC 3 cut(s) 90, 149, 246
NlaIII CATG 3 cut(s) 30, 228, 351
NmuCI GTSAC 1 cut(s) 176
NspI RCATGY 2 cut(s) 30, 228
PciI ACATGT 1 cut(s) 224
PfeI GAWTC 1 cut(s) 356
PinAI ACCGGT 1 cut(s) 77
PkrI GCNGC 2 cut(s) 271, 418
Ple19I CGATCG 1 cut(s) 249
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PscI ACATGT 1 cut(s) 224
PsiI TTATAA 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 90
PvuI CGATCG 1 cut(s) 249
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 3 cut(s) 69, 281, 300
SatI GCNGC 2 cut(s) 270, 417
Sau3AI GATC 3 cut(s) 90, 149, 246
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 370
ScrFI CCNGG 2 cut(s) 198, 266
SetI ASST 8 cut(s) 126, 183, 199, 300, 375, 403, 414, 421
SfcI CTRYAG 1 cut(s) 426
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 5 cut(s) 190, 229, 235, 282, 443
SsiI CCGC 1 cut(s) 269
StyD4I CCNGG 2 cut(s) 196, 264
TaaI ACNGT 1 cut(s) 216
TaiI ACGT 1 cut(s) 126
TaqI TCGA 2 cut(s) 18, 74
TasI AATT 5 cut(s) 190, 229, 235, 282, 443
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 3 cut(s) 69, 281, 300
Tru9I TTAA 3 cut(s) 69, 281, 300
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 179, 348
Vha464I CTTAAG 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 4
XceI RCATGY 2 cut(s) 30, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.