Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006932.1

Orthogroup ID

OG0016266

Physical Location & Seq

Genomic Coordinates Reverse (-)

13846 .. 14298

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006932.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atggacgaaaatcttatcgaggaaacatgcagaaagacaccagactacgatatatgtctcttttgtcttaaatcgaccggtggtagtgggatcttgactgcaaatcgcacacgcttggccgacgtaatgattgatgtagtccagcagagatcaatcactactatgaacaatatgagtgaccttcttggtaaaacacctggagatacatatgaaccgttatctacatgtattcaaaattacattgcgatcgtaactcgttatatcccggcggccaagaagttaatttacacaagtgagcttaagatggcaaagaaaataatggataacattccaaatgttgcaaaatcatgtgaggattcattcagaggcaagctgactcctattgctgacttgcatataggtgttcaaaaggtttcagctattgctatagcaataatagggcaattgggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

150

Amino Acids

16.46

Weight (kDa)

7.58

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24190 FvH4_2g24200 FvH4_2g24210
rosa_multiflora	Rmu_sc0006932.1_g000005
rosa_roxburghii	Rroxscaffold_3G00234930 Rroxscaffold_3G00234970
rosa_rugosa	Rorug07G0222100
rosa_samantha	Rh7AG367100 Rh7AG367200 Rh7BG357900 Rh7CG385500 Rh7DG361000 Rh7DG361100
rosa_wichuraiana	Rw7G031060 Rw7G031080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	269
AclWI	GGATC	1 cut(s)	98
AcoI	YGGCCR	2 cut(s)	117, 270
AflII	CTTAAG	1 cut(s)	299
AflIII	ACRYGT	1 cut(s)	224
AgeI	ACCGGT	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	233, 407
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	3 cut(s)	298, 373, 419
AluI	AGCT	3 cut(s)	298, 373, 419
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	2 cut(s)	117, 270
AsiGI	ACCGGT	1 cut(s)	77
AsuC2I	CCSGG	1 cut(s)	266
BarI	GAAGNNNNNNTAC	2 cut(s)	269, 301
BccI	CCATC	1 cut(s)	298
BciT130I	CCWGG	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	426
BfrI	CTTAAG	1 cut(s)	299
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	2 cut(s)	198, 266
BmrFI	CCNGG	2 cut(s)	198, 266
BpmI	CTGGAG	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	266
BsaWI	WCCGGW	1 cut(s)	77
Bse118I	RCCGGY	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	240
Bsh1285I	CGRYCG	2 cut(s)	78, 249
BshFI	GGCC	2 cut(s)	119, 272
BshTI	ACCGGT	1 cut(s)	77
BsiEI	CGRYCG	2 cut(s)	78, 249
BsiSI	CCGG	2 cut(s)	78, 266
BsmAI	GTCTC	1 cut(s)	62
BsnI	GGCC	2 cut(s)	119, 272
Bsp143I	GATC	3 cut(s)	90, 149, 246
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	2 cut(s)	119, 272
BspPI	GGATC	1 cut(s)	98
BspTI	CTTAAG	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	77
BssAI	RCCGGY	1 cut(s)	77
BssMI	GATC	3 cut(s)	90, 149, 246
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	216
BstAFI	CTTAAG	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	371
BstKTI	GATC	3 cut(s)	93, 152, 249
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	3 cut(s)	90, 149, 246
BstMCI	CGRYCG	2 cut(s)	78, 249
BstNI	CCWGG	1 cut(s)	198
BstNSI	RCATGY	2 cut(s)	30, 228
BstSCI	CCNGG	2 cut(s)	196, 264
BstSFI	CTRYAG	1 cut(s)	426
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BsuRI	GGCC	2 cut(s)	119, 272
Cac8I	GCNNGC	1 cut(s)	371
Cfr10I	RCCGGY	1 cut(s)	77
CspAI	ACCGGT	1 cut(s)	77
CviAII	CATG	3 cut(s)	27, 225, 348
CviJI	RGCY	5 cut(s)	119, 272, 298, 373, 419
CviKI_1	RGCY	5 cut(s)	119, 272, 298, 373, 419
DpnI	GATC	3 cut(s)	92, 151, 248
DpnII	GATC	3 cut(s)	90, 149, 246
EaeI	YGGCCR	2 cut(s)	117, 270
EcoRII	CCWGG	1 cut(s)	196
FaeI	CATG	3 cut(s)	30, 228, 351
FatI	CATG	3 cut(s)	26, 224, 347
FauNDI	CATATG	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	119, 272
HapII	CCGG	2 cut(s)	78, 266
Hin1II	CATG	3 cut(s)	30, 228, 351
HinfI	GANTC	2 cut(s)	356, 376
HpaII	CCGG	2 cut(s)	78, 266
Hpy188I	TCNGA	1 cut(s)	365
Hpy188III	TCNNGA	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	216
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	4 cut(s)	30, 101, 341, 394
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	3 cut(s)	30, 228, 351
Kzo9I	GATC	3 cut(s)	90, 149, 246
LpnPI	CCDG	6 cut(s)	54, 91, 155, 183, 210, 279
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	176, 250
MalI	GATC	3 cut(s)	92, 151, 248
MboI	GATC	3 cut(s)	90, 149, 246
MfeI	CAATTG	1 cut(s)	443
MflI	RGATCY	1 cut(s)	90
MluCI	AATT	3 cut(s)	235, 282, 443
MlyI	GAGTC	1 cut(s)	370
MnlI	CCTC	3 cut(s)	13, 346, 359
MseI	TTAA	3 cut(s)	69, 281, 300
MslI	CAYNNNNRTG	2 cut(s)	161, 399
MspCI	CTTAAG	1 cut(s)	299
MspI	CCGG	2 cut(s)	78, 266
MspR9I	CCNGG	2 cut(s)	198, 266
MunI	CAATTG	1 cut(s)	443
MvaI	CCWGG	1 cut(s)	198
NciI	CCSGG	1 cut(s)	266
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	3 cut(s)	90, 149, 246
NlaIII	CATG	3 cut(s)	30, 228, 351
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	2 cut(s)	30, 228
PciI	ACATGT	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	356
PinAI	ACCGGT	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	271
Ple19I	CGATCG	1 cut(s)	249
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PscI	ACATGT	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	90
PvuI	CGATCG	1 cut(s)	249
RseI	CAYNNNNRTG	2 cut(s)	161, 399
SaqAI	TTAA	3 cut(s)	69, 281, 300
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	3 cut(s)	90, 149, 246
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	2 cut(s)	198, 266
SetI	ASST	8 cut(s)	126, 183, 199, 300, 375, 403, 414, 421
SfcI	CTRYAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	2 cut(s)	161, 399
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	3 cut(s)	235, 282, 443
SsiI	CCGC	1 cut(s)	269
StyD4I	CCNGG	2 cut(s)	196, 264
TaaI	ACNGT	1 cut(s)	216
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	18, 74
TasI	AATT	3 cut(s)	235, 282, 443
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	3 cut(s)	69, 281, 300
Tru9I	TTAA	3 cut(s)	69, 281, 300
TseFI	GTSAC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	3 cut(s)	179, 225, 348
Vha464I	CTTAAG	1 cut(s)	299
XceI	RCATGY	2 cut(s)	30, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.