Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0016266

Physical Location & Seq

Genomic Coordinates Reverse (-)

47260102 .. 47266948

Gene Structure 6847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG367100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGACGAAAATCTTATCGAGGAAACATGCAGAAAGACACCAGACTATGATATATGTCTCTTTTGTCTTAAATCGACCGGTGGTAGTGGGATCTTGACTGCAAATCGCACACGCTTGGCCGACGTAATGATTGATGTAGTCCGGCAGAGATCAATCACTACTACGAACAATATGAGTGACCTTCTTGAGAATACAGAGGCAAAAGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0030234 GO:0030427 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0042995 GO:0043086 GO:0044092 GO:0044463 GO:0044464 GO:0044706 GO:0046910 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050790 GO:0051286 GO:0051704 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0090404 GO:0090406 GO:0098772 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

70

Amino Acids

7.88

Weight (kDa)

4.76

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	4 - 67	8.9e-08	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24190 FvH4_2g24200 FvH4_2g24210
rosa_multiflora	Rmu_sc0006932.1_g000005
rosa_roxburghii	Rroxscaffold_3G00234930 Rroxscaffold_3G00234970
rosa_rugosa	Rorug07G0222100
rosa_samantha	Rh7AG367100 Rh7AG367200 Rh7BG357900 Rh7CG385500 Rh7DG361000 Rh7DG361100
rosa_wichuraiana	Rw7G031060 Rw7G031080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	98
AcoI	YGGCCR	1 cut(s)	117
AgeI	ACCGGT	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	1 cut(s)	117
AsiGI	ACCGGT	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	77
Bse118I	RCCGGY	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	119
BshTI	ACCGGT	1 cut(s)	77
BsiEI	CGRYCG	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	78, 142
BsmAI	GTCTC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	90, 149
BspANI	GGCC	1 cut(s)	119
BspPI	GGATC	1 cut(s)	98
BsrFI	RCCGGY	1 cut(s)	77
BssAI	RCCGGY	1 cut(s)	77
BssMI	GATC	2 cut(s)	90, 149
BstKTI	GATC	2 cut(s)	93, 152
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	2 cut(s)	90, 149
BstMCI	CGRYCG	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	119
Cfr10I	RCCGGY	1 cut(s)	77
CspAI	ACCGGT	1 cut(s)	77
CviAII	CATG	1 cut(s)	27
CviJI	RGCY	1 cut(s)	119
CviKI_1	RGCY	1 cut(s)	119
DpnI	GATC	2 cut(s)	92, 151
DpnII	GATC	2 cut(s)	90, 149
EaeI	YGGCCR	1 cut(s)	117
FaeI	CATG	1 cut(s)	30
FaiI	YATR	5 cut(s)	28, 48, 53, 55, 173
FatI	CATG	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	2 cut(s)	78, 142
Hin1II	CATG	1 cut(s)	30
HpaII	CCGG	2 cut(s)	78, 142
Hpy188III	TCNNGA	2 cut(s)	94, 185
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	191
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	30, 101
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	90, 149
LpnPI	CCDG	3 cut(s)	54, 91, 155
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	2 cut(s)	92, 151
MboI	GATC	2 cut(s)	90, 149
MflI	RGATCY	1 cut(s)	90
MnlI	CCTC	2 cut(s)	13, 190
MseI	TTAA	1 cut(s)	69
MspI	CCGG	2 cut(s)	78, 142
NdeII	GATC	2 cut(s)	90, 149
NlaIII	CATG	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	1 cut(s)	30
PinAI	ACCGGT	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	69
Sau3AI	GATC	2 cut(s)	90, 149
SetI	ASST	2 cut(s)	126, 183
SgeI	CNNG	9 cut(s)	31, 39, 53, 90, 106, 123, 127, 154, 197
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	18, 74
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	176
XceI	RCATGY	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.