Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009030

Physical Location & Seq

Genomic Coordinates Reverse (-)

19907494 .. 19910585

Gene Structure 3092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24370.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCTGGTAGTAATGAAGTCAACCTCAATGAATCCAAGAGAGTTGTTCCACTCAATACATGGGTGCTCATCTCCAATTTCAAACTGGCCTACAATCTCCTCCGCCGCTCCGACGGAACATTCAACCGTGAGCTGGCGGAGTTCCTTGACCGCAAAGTCCCTGCAAACACCGTCCCAGTTGACGGTGTCTTCTCCTTTGATCATGTTGACAGAAGCACCGGCCTCCTCAACCGGGTTTACCAAATGGCCCCTGCAAACAATGCTCAATGGGGCTTTGTGAATCTTGAGAAACCCTTGAGCACCACTGAGATTGTGCCTGTCATAATTTTCTTCCATGGTGGGAGCTTCACTCACTCCTCGGCCAACAGTGCTATCTACGACACCTTTTGCCGCCGCCTTGTTAACACCTGCAAGGCTGCTGTGGTGTCTGTGGACTACCGCCGCTCACCTGAACACCGGTATCCTTGTGCTTATGATGACGGCTGGTCAGCTCTCAAGTGGGTTAAGTCGAGAACATGGCTGCAGAGTGGGAAGGACTCTAAGGTCTATGTGTACTTGGCTGGAGATAGTTCTGGTGGCAACATTGCACACCATGTTGCTGTGAAGGCAGCTGAAGCTGAAGTAGAGGTTTTGGGGAACATCCTTCTTCATCCAATGTTTGCTGGCCAAATGAGGACTGCATCTGAGGTTAAACTAGATGGGAAGTACTTTGTATCGATTCAAGACCGTGATTGGTACTGGCGAGCATTTCTACCTGAAGGAGAAGATAGAGACCACCCTGCGTGCAACATATTTGGCCCCAGAGGTAAGGGGATTCAAGGGCTCAAGTTCCCCAAAAGTCTTGTTGTTGTGGCTGGTTTGGACCTTATGCAAGATTGGCAATTGGCTTATGTTGAAGGGCTGAGGAATTCAGGGCAGGATGTGAAGCTCCTTTTCCTTGAGGAGGCGACAATTGGGTTCTACTTCCTGCCTAACAATAAGCATTTCTATTGTCTAATGGAGGAGATGAGCAACTTCGTCAAACCCGACTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009311 GO:0009312 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009755 GO:0009791 GO:0009892 GO:0009908 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010154 GO:0010325 GO:0010331 GO:0010468 GO:0010476 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0016051 GO:0016787 GO:0019222 GO:0019840 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0031406 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044238 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048518 GO:0048519 GO:0048522 GO:0048530 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0080154 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901576 GO:1901700 GO:1901701 GO:1905392 GO:1905516 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

345

Amino Acids

38.81

Weight (kDa)

6.76

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	16 - 128	1.2e-12	BD-FAE
Abhydrolase_3	PF07859	27 - 240	1.8e-60	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63010
fragaria_vesca	FvH4_2g24370 FvH4_2g24370 FvH4_3g11720
malus_domestica	MD03G1273300.v1.1 MD11G1296000.v1.1
prunus_persica	Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1
pyrus_communis	pycom03g21780 pycom11g26050
rosa_chinensis	RchiOBHm_Chr6g0292241
rosa_laevigata	RLG00000012050
rosa_multiflora	Rmu_sc0002993.1_g000009
rosa_roxburghii	Rroxscaffold_7G00175310
rosa_rugosa	Rorug06G0224800
rosa_samantha	Rh6AG337800 Rh6BG345100 Rh6CG352200 Rh6DG338100
rosa_wichuraiana	Rw6G029420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	416
AasI	GACNNNNNNGTC	2 cut(s)	155, 542
Acc36I	ACCTGC	1 cut(s)	416
AccBSI	CCGCTC	2 cut(s)	108, 444
AciI	CCGC	8 cut(s)	103, 106, 137, 151, 391, 394, 439, 442
AcoI	YGGCCR	2 cut(s)	360, 664
AcsI	RAATTY	1 cut(s)	907
AcuI	CTGAAG	3 cut(s)	633, 639, 777
AfaI	GTAC	3 cut(s)	554, 707, 737
AfiI	CCNNNNNNNGG	4 cut(s)	133, 182, 232, 943
AgeI	ACCGGT	1 cut(s)	456
AgsI	TTSAA	5 cut(s)	82, 124, 722, 818, 896
AhdI	GACNNNNNGTC	1 cut(s)	484
AluBI	AGCT	6 cut(s)	133, 345, 491, 611, 617, 928
AluI	AGCT	6 cut(s)	133, 345, 491, 611, 617, 928
Alw21I	GWGCWC	2 cut(s)	69, 302
Alw26I	GTCTC	1 cut(s)	765
AoxI	GGCC	6 cut(s)	87, 220, 246, 360, 664, 796
ApeKI	GCWGC	3 cut(s)	416, 520, 608
ApoI	RAATTY	1 cut(s)	907
AsiGI	ACCGGT	1 cut(s)	456
AspS9I	GGNCC	3 cut(s)	247, 797, 862
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	438
AvaII	GGWCC	1 cut(s)	862
BaeI	ACNNNNGTAYC	2 cut(s)	443, 476
BalI	TGGCCA	1 cut(s)	666
BanII	GRGCYC	1 cut(s)	825
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	2 cut(s)	69, 302
BbvCI	CCTCAGC	1 cut(s)	902
BbvI	GCAGC	3 cut(s)	403, 507, 620
BccI	CCATC	1 cut(s)	692
BceAI	ACGGC	1 cut(s)	496
BciVI	GTATCC	1 cut(s)	471
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	765
BfaI	CTAG	1 cut(s)	695
BfmI	CTRYAG	1 cut(s)	521
BfuAI	ACCTGC	1 cut(s)	416
BfuI	GTATCC	1 cut(s)	471
BisI	GCNGC	7 cut(s)	106, 391, 394, 417, 442, 521, 609
BlsI	GCNGC	7 cut(s)	107, 392, 395, 418, 443, 522, 610
BmcAI	AGTACT	1 cut(s)	707
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	862
BmeRI	GACNNNNNGTC	1 cut(s)	484
BmgT120I	GGNCC	3 cut(s)	247, 797, 862
BmiI	GGNNCC	2 cut(s)	249, 799
BmrFI	CCNGG	1 cut(s)	233
BmrI	ACTGGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	689
BmuI	ACTGGG	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	181
BplI	GAGNNNNNCTC	2 cut(s)	334, 366
BpmI	CTGGAG	1 cut(s)	582
Bpu10I	CCTNAGC	1 cut(s)	902
BpuEI	CTTGAG	5 cut(s)	305, 316, 479, 809, 959
BpuMI	CCSGG	1 cut(s)	233
Bsa29I	ATCGAT	1 cut(s)	716
BsaI	GGTCTC	1 cut(s)	765
BsaJI	CCNNGG	2 cut(s)	334, 357
BsaWI	WCCGGW	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 182, 232, 943
Bse118I	RCCGGY	2 cut(s)	218, 456
Bse1I	ACTGG	3 cut(s)	90, 176, 743
Bse3DI	GCAATG	1 cut(s)	582
BseCI	ATCGAT	1 cut(s)	716
BseDI	CCNNGG	2 cut(s)	334, 357
BseGI	GGATG	3 cut(s)	639, 649, 925
BseLI	CCNNNNNNNGG	4 cut(s)	133, 182, 232, 943
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	3 cut(s)	297, 675, 893
BseNI	ACTGG	3 cut(s)	90, 176, 743
BseRI	GAGGAG	5 cut(s)	89, 215, 346, 956, 1016
BseXI	GCAGC	3 cut(s)	403, 507, 620
BshFI	GGCC	6 cut(s)	89, 222, 248, 362, 666, 798
BshTI	ACCGGT	1 cut(s)	456
BshVI	ATCGAT	1 cut(s)	716
BsiHKAI	GWGCWC	2 cut(s)	69, 302
BsiSI	CCGG	3 cut(s)	219, 232, 457
BslFI	GGGAC	2 cut(s)	143, 158
BslI	CCNNNNNNNGG	4 cut(s)	133, 182, 232, 943
BsmAI	GTCTC	1 cut(s)	765
BsmFI	GGGAC	2 cut(s)	143, 158
BsnI	GGCC	6 cut(s)	89, 222, 248, 362, 666, 798
Bso31I	GGTCTC	1 cut(s)	765
Bsp1286I	GDGCHC	3 cut(s)	69, 302, 825
Bsp143I	GATC	1 cut(s)	199
Bsp19I	CCATGG	1 cut(s)	334
BspACI	CCGC	8 cut(s)	103, 106, 137, 151, 391, 394, 439, 442
BspANI	GGCC	6 cut(s)	89, 222, 248, 362, 666, 798
BspCNI	CTCAG	3 cut(s)	298, 676, 894
BspDI	ATCGAT	1 cut(s)	716
BspLI	GGNNCC	2 cut(s)	249, 799
BspMAI	CTGCAG	1 cut(s)	525
BspMI	ACCTGC	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	765
BsrBI	CCGCTC	2 cut(s)	108, 444
BsrDI	GCAATG	1 cut(s)	582
BsrFI	RCCGGY	2 cut(s)	218, 456
BsrI	ACTGG	3 cut(s)	90, 176, 743
BssAI	RCCGGY	2 cut(s)	218, 456
BssECI	CCNNGG	2 cut(s)	334, 357
BssMI	GATC	1 cut(s)	199
BssT1I	CCWWGG	1 cut(s)	334
Bst4CI	ACNGT	6 cut(s)	128, 172, 185, 368, 728, 1031
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstC8I	GCNNGC	4 cut(s)	135, 664, 744, 784
BstDEI	CTNAG	4 cut(s)	306, 540, 684, 902
BstDSI	CCRYGG	1 cut(s)	334
BstENI	CCTNNNNNAGG	1 cut(s)	941
BstF5I	GGATG	3 cut(s)	639, 649, 925
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	1 cut(s)	765
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	5 cut(s)	260, 368, 605, 614, 877
BstSCI	CCNGG	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	521
BstV1I	GCAGC	3 cut(s)	403, 507, 620
BstV2I	GAAGAC	1 cut(s)	181
Bsu15I	ATCGAT	1 cut(s)	716
BsuI	GTATCC	1 cut(s)	471
BsuRI	GGCC	6 cut(s)	89, 222, 248, 362, 666, 798
BsuTUI	ATCGAT	1 cut(s)	716
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	3 cut(s)	639, 649, 925
BtsIMutI	CAGTG	2 cut(s)	303, 373
BveI	ACCTGC	1 cut(s)	416
Cac8I	GCNNGC	4 cut(s)	135, 664, 744, 784
Cfr10I	RCCGGY	2 cut(s)	218, 456
Cfr13I	GGNCC	3 cut(s)	247, 797, 862
ClaI	ATCGAT	1 cut(s)	716
Csp6I	GTAC	3 cut(s)	553, 706, 736
CspAI	ACCGGT	1 cut(s)	456
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	5 cut(s)	60, 203, 335, 516, 593
CviQI	GTAC	3 cut(s)	553, 706, 736
DdeI	CTNAG	4 cut(s)	306, 540, 684, 902
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
DrdI	GACNNNNNNGTC	2 cut(s)	155, 542
DriI	GACNNNNNGTC	1 cut(s)	484
DseDI	GACNNNNNNGTC	2 cut(s)	155, 542
EaeI	YGGCCR	2 cut(s)	360, 664
Eam1105I	GACNNNNNGTC	1 cut(s)	484
EciI	GGCGGA	2 cut(s)	92, 152
Eco130I	CCWWGG	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	825
Eco31I	GGTCTC	1 cut(s)	765
Eco47I	GGWCC	1 cut(s)	862
Eco57I	CTGAAG	3 cut(s)	633, 639, 777
EcoNI	CCTNNNNNAGG	1 cut(s)	941
EcoRI	GAATTC	1 cut(s)	907
EcoT14I	CCWWGG	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	825
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	5 cut(s)	63, 206, 338, 519, 596
FaqI	GGGAC	2 cut(s)	143, 158
FatI	CATG	5 cut(s)	59, 202, 334, 515, 592
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	7 cut(s)	106, 391, 394, 417, 442, 521, 609
FokI	GGATG	3 cut(s)	626, 636, 932
FriOI	GRGCYC	1 cut(s)	825
Fsp4HI	GCNGC	7 cut(s)	106, 391, 394, 417, 442, 521, 609
FspBI	CTAG	1 cut(s)	695
GluI	GCNGC	7 cut(s)	106, 391, 394, 417, 442, 521, 609
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	6 cut(s)	89, 222, 248, 362, 666, 798
HapII	CCGG	3 cut(s)	219, 232, 457
Hin1II	CATG	5 cut(s)	63, 206, 338, 519, 596
HincII	GTYRAC	4 cut(s)	22, 181, 208, 403
HindII	GTYRAC	4 cut(s)	22, 181, 208, 403
HinfI	GANTC	5 cut(s)	32, 280, 536, 718, 814
HpaI	GTTAAC	1 cut(s)	403
HpaII	CCGG	3 cut(s)	219, 232, 457
HphI	GGTGA	1 cut(s)	438
Hpy166II	GTNNAC	7 cut(s)	22, 181, 208, 238, 403, 433, 553
Hpy188I	TCNGA	2 cut(s)	112, 685
Hpy188III	TCNNGA	3 cut(s)	284, 510, 722
Hpy8I	GTNNAC	7 cut(s)	22, 181, 208, 238, 403, 433, 553
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	5 cut(s)	526, 598, 653, 752, 890
HpyCH4III	ACNGT	6 cut(s)	128, 172, 185, 368, 728, 1031
HpyCH4V	TGCA	8 cut(s)	164, 254, 411, 523, 587, 680, 786, 871
HpyF10VI	GCNNNNNNNGC	5 cut(s)	260, 368, 605, 614, 877
HpyF3I	CTNAG	4 cut(s)	306, 540, 684, 902
Hsp92II	CATG	5 cut(s)	63, 206, 338, 519, 596
Ksp22I	TGATCA	1 cut(s)	199
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	3 cut(s)	113, 342, 933
Lsp1109I	GCAGC	3 cut(s)	403, 507, 620
LweI	GCATC	1 cut(s)	689
MaeI	CTAG	1 cut(s)	695
MalI	GATC	1 cut(s)	201
MbiI	CCGCTC	2 cut(s)	108, 444
MboI	GATC	1 cut(s)	199
MboII	GAAGA	4 cut(s)	181, 322, 638, 776
MfeI	CAATTG	2 cut(s)	881, 951
MhlI	GDGCHC	3 cut(s)	69, 302, 825
MlsI	TGGCCA	1 cut(s)	666
MluCI	AATT	5 cut(s)	76, 324, 881, 907, 951
MluNI	TGGCCA	1 cut(s)	666
MlyI	GAGTC	1 cut(s)	530
MmeI	TCCRAC	1 cut(s)	135
Mox20I	TGGCCA	1 cut(s)	666
MscI	TGGCCA	1 cut(s)	666
MseI	TTAA	4 cut(s)	402, 504, 690, 1033
Msp20I	TGGCCA	1 cut(s)	666
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	3 cut(s)	219, 232, 457
MspR9I	CCNGG	1 cut(s)	233
MunI	CAATTG	2 cut(s)	881, 951
MwoI	GCNNNNNNNGC	5 cut(s)	260, 368, 605, 614, 877
NciI	CCSGG	1 cut(s)	233
NcoI	CCATGG	1 cut(s)	334
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	5 cut(s)	63, 206, 338, 519, 596
NlaIV	GGNNCC	2 cut(s)	249, 799
NmeAIII	GCCGAG	1 cut(s)	338
PaqCI	CACCTGC	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	1 cut(s)	1023
PfeI	GAWTC	4 cut(s)	32, 280, 718, 814
PflFI	GACNNNGTC	1 cut(s)	185
PinAI	ACCGGT	1 cut(s)	456
PkrI	GCNGC	7 cut(s)	107, 392, 395, 418, 443, 522, 610
PleI	GAGTC	1 cut(s)	530
PpsI	GAGTC	1 cut(s)	530
PspN4I	GGNNCC	2 cut(s)	249, 799
PspPI	GGNCC	3 cut(s)	247, 797, 862
PstI	CTGCAG	1 cut(s)	525
PsyI	GACNNNGTC	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	3 cut(s)	554, 707, 737
RsaNI	GTAC	3 cut(s)	553, 706, 736
SaqAI	TTAA	4 cut(s)	402, 504, 690, 1033
SatI	GCNGC	7 cut(s)	106, 391, 394, 417, 442, 521, 609
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	3 cut(s)	247, 797, 862
ScaI	AGTACT	1 cut(s)	707
SchI	GAGTC	1 cut(s)	530
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	3 cut(s)	69, 302, 825
SfaNI	GCATC	1 cut(s)	689
SfcI	CTRYAG	1 cut(s)	521
SinI	GGWCC	1 cut(s)	862
SmlI	CTYRAG	5 cut(s)	284, 295, 494, 824, 938
SmoI	CTYRAG	5 cut(s)	284, 295, 494, 824, 938
Sse9I	AATT	5 cut(s)	76, 324, 881, 907, 951
SsiI	CCGC	8 cut(s)	103, 106, 137, 151, 391, 394, 439, 442
SspMI	CTAG	1 cut(s)	695
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	6 cut(s)	128, 172, 185, 368, 728, 1031
TaqI	TCGA	2 cut(s)	509, 716
TasI	AATT	5 cut(s)	76, 324, 881, 907, 951
TatI	WGTACW	2 cut(s)	552, 705
TauI	GCSGC	4 cut(s)	108, 393, 396, 444
TfiI	GAWTC	4 cut(s)	32, 280, 718, 814
Tru1I	TTAA	4 cut(s)	402, 504, 690, 1033
Tru9I	TTAA	4 cut(s)	402, 504, 690, 1033
TscAI	CASTG	2 cut(s)	310, 373
TseI	GCWGC	3 cut(s)	416, 520, 608
TspDTI	ATGAA	3 cut(s)	30, 45, 638
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	2 cut(s)	310, 373
Tth111I	GACNNNGTC	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	862
XagI	CCTNNNNNAGG	1 cut(s)	941
XapI	RAATTY	1 cut(s)	907
XcmI	CCANNNNNNNNNTGG	2 cut(s)	57, 82
XspI	CTAG	1 cut(s)	695
ZrmI	AGTACT	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.