Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009030

Physical Location & Seq

Genomic Coordinates Forward (+)

14882711 .. 14885250

Gene Structure 2540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00175310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAAGTCAACCTCAATGAATCCAAGAGGGTTGTTCCACTCAATACATGGGTACTCATCTCCAAATTTCAAGCTGGCGTACAATCTCCTCCGCCGCTCGGACGGAACATTCAACCGTGAGCTGGCGGAGTACCTTGACCGCAAAGTCCCTGCAAACACATTCCCAGTTGATGGTGTCGTCTCCTTTGATCATGTCGACAGAAGCACTGGCCTCCTCAACCGGATTTACCAAATGGCCCCCGCAAACCATGCTCAATGGGGCATTGTGAATCTTGAGAAACCCTTGAGCGCCACTGAAATTGTGCCTGTCATAATATTCTTCCATGGTGGGAGCTTCACTCACTCCTCGGCCAACAGTGCTATCTATGACACTTTCTGCCGCCGCCTTGTTAACACCTGCAAGGCTGCTGTGGTGTCTGTAGACTACCGCCGATCACCTGAACATCGGTATCCCTGTGCTTATGATGACGGCTGGGCAGCTCTCAAGTGGGTTAAGTCGAGAACATGGCTTCAGAGTGGGAAGGACTCTAAGGTTTATGTGTACTTGGCTGGAGATAGTTCTGGTGGCAACATTGCACACCATGTTGCTGTGAGGGCAGCTGAAGCTGAAGTTGAGGTTTTGGGGAACATCCTTCTTCATCCAATGTTTGGCGGGCAAATGAGGACTGAATCCGAGGTTAAACTAGATGGGAAGTACTTTGTAACGATTCAAGACCGCGATTGGTACTGGCGAGCCTTTTTTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009311 GO:0009312 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009755 GO:0009791 GO:0009892 GO:0009908 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010154 GO:0010325 GO:0010331 GO:0010468 GO:0010476 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0016051 GO:0016787 GO:0019222 GO:0019840 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0031406 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044238 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048518 GO:0048519 GO:0048522 GO:0048530 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0080154 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901576 GO:1901700 GO:1901701 GO:1905392 GO:1905516 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

248

Amino Acids

28.02

Weight (kDa)

8.9

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	94 - 205	1.3e-12	BD-FAE
Abhydrolase_3	PF07859	104 - 246	3.2e-44	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63010
fragaria_vesca	FvH4_2g24370 FvH4_2g24370 FvH4_3g11720
malus_domestica	MD03G1273300.v1.1 MD11G1296000.v1.1
prunus_persica	Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1
pyrus_communis	pycom03g21780 pycom11g26050
rosa_chinensis	RchiOBHm_Chr6g0292241
rosa_laevigata	RLG00000012050
rosa_multiflora	Rmu_sc0002993.1_g000009
rosa_roxburghii	Rroxscaffold_7G00175310
rosa_rugosa	Rorug06G0224800
rosa_samantha	Rh6AG337800 Rh6BG345100 Rh6CG352200 Rh6DG338100
rosa_wichuraiana	Rw6G029420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	404
AasI	GACNNNNNNGTC	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	404
AccB7I	CCANNNNNTGG	2 cut(s)	170, 647
AccBSI	CCGCTC	1 cut(s)	96
AccI	GTMKAC	2 cut(s)	195, 420
AccII	CGCG	1 cut(s)	717
AcoI	YGGCCR	1 cut(s)	348
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	3 cut(s)	494, 621, 627
AfaI	GTAC	6 cut(s)	53, 80, 131, 542, 695, 725
AfiI	CCNNNNNNNGG	4 cut(s)	97, 121, 170, 647
AgsI	TTSAA	3 cut(s)	70, 112, 710
AluBI	AGCT	6 cut(s)	73, 121, 333, 479, 599, 605
AluI	AGCT	6 cut(s)	73, 121, 333, 479, 599, 605
Alw26I	GTCTC	1 cut(s)	184
AoxI	GGCC	3 cut(s)	208, 234, 348
ApeKI	GCWGC	3 cut(s)	404, 476, 596
ApoI	RAATTY	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	426
BaeI	ACNNNNGTAYC	2 cut(s)	431, 464
BbvI	GCAGC	3 cut(s)	391, 488, 608
BccI	CCATC	2 cut(s)	164, 680
BceAI	ACGGC	1 cut(s)	484
BciVI	GTATCC	1 cut(s)	459
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	683
BfmI	CTRYAG	1 cut(s)	417
BfoI	RGCGCY	1 cut(s)	291
BfuAI	ACCTGC	1 cut(s)	404
BfuI	GTATCC	1 cut(s)	459
BisI	GCNGC	6 cut(s)	94, 379, 382, 405, 477, 597
BlsI	GCNGC	6 cut(s)	95, 380, 383, 406, 478, 598
BmcAI	AGTACT	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	237
BmrI	ACTGGG	1 cut(s)	158
BmuI	ACTGGG	1 cut(s)	158
BplI	GAGNNNNNCTC	2 cut(s)	322, 354
BpmI	CTGGAG	1 cut(s)	570
BpuEI	CTTGAG	3 cut(s)	293, 304, 467
BsaJI	CCNNGG	3 cut(s)	322, 345, 672
BsaWI	WCCGGW	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 121, 170, 647
Bse1I	ACTGG	3 cut(s)	164, 211, 731
Bse3DI	GCAATG	1 cut(s)	570
BseDI	CCNNGG	3 cut(s)	322, 345, 672
BseGI	GGATG	2 cut(s)	627, 637
BseLI	CCNNNNNNNGG	4 cut(s)	97, 121, 170, 647
BseMI	GCAATG	1 cut(s)	570
BseNI	ACTGG	3 cut(s)	164, 211, 731
BseRI	GAGGAG	3 cut(s)	77, 203, 334
BseXI	GCAGC	3 cut(s)	391, 488, 608
BseYI	CCCAGC	1 cut(s)	471
Bsh1236I	CGCG	1 cut(s)	717
BshFI	GGCC	3 cut(s)	210, 236, 350
BsiSI	CCGG	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	4 cut(s)	97, 121, 170, 647
BsmAI	GTCTC	1 cut(s)	184
BsmBI	CGTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	3 cut(s)	210, 236, 350
Bsp143I	GATC	2 cut(s)	187, 431
Bsp19I	CCATGG	1 cut(s)	322
BspANI	GGCC	3 cut(s)	210, 236, 350
BspFNI	CGCG	1 cut(s)	717
BspLI	GGNNCC	1 cut(s)	237
BspMI	ACCTGC	1 cut(s)	404
BsrBI	CCGCTC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	570
BsrI	ACTGG	3 cut(s)	164, 211, 731
BssECI	CCNNGG	3 cut(s)	322, 345, 672
BssMI	GATC	2 cut(s)	187, 431
BssT1I	CCWWGG	1 cut(s)	322
Bst4CI	ACNGT	2 cut(s)	116, 356
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	4 cut(s)	75, 123, 653, 732
BstDEI	CTNAG	1 cut(s)	528
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	2 cut(s)	627, 637
BstFNI	CGCG	1 cut(s)	717
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	2 cut(s)	190, 434
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	2 cut(s)	187, 431
BstMWI	GCNNNNNNNGC	5 cut(s)	248, 356, 593, 602, 740
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	1 cut(s)	717
BstV1I	GCAGC	3 cut(s)	391, 488, 608
BsuI	GTATCC	1 cut(s)	459
BsuRI	GGCC	3 cut(s)	210, 236, 350
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	627, 637
BtsIMutI	CAGTG	3 cut(s)	204, 291, 361
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	4 cut(s)	75, 123, 653, 732
CfoI	GCGC	1 cut(s)	290
Cfr13I	GGNCC	1 cut(s)	235
Csp6I	GTAC	6 cut(s)	52, 79, 130, 541, 694, 724
CspCI	CAANNNNNGTGG	2 cut(s)	280, 315
CviAII	CATG	6 cut(s)	47, 191, 248, 323, 504, 581
CviQI	GTAC	6 cut(s)	52, 79, 130, 541, 694, 724
DdeI	CTNAG	1 cut(s)	528
DpnI	GATC	2 cut(s)	189, 433
DpnII	GATC	2 cut(s)	187, 431
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	348
EciI	GGCGGA	2 cut(s)	80, 140
Eco130I	CCWWGG	1 cut(s)	322
Eco57I	CTGAAG	3 cut(s)	494, 621, 627
EcoT14I	CCWWGG	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	322
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	6 cut(s)	50, 194, 251, 326, 507, 584
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	6 cut(s)	46, 190, 247, 322, 503, 580
FauI	CCCGC	2 cut(s)	247, 644
FbaI	TGATCA	1 cut(s)	187
FblI	GTMKAC	2 cut(s)	195, 420
Fnu4HI	GCNGC	6 cut(s)	94, 379, 382, 405, 477, 597
FokI	GGATG	2 cut(s)	614, 624
Fsp4HI	GCNGC	6 cut(s)	94, 379, 382, 405, 477, 597
FspBI	CTAG	1 cut(s)	683
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	6 cut(s)	94, 379, 382, 405, 477, 597
GsaI	CCCAGC	1 cut(s)	475
GsuI	CTGGAG	1 cut(s)	570
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	210, 236, 350
HapII	CCGG	1 cut(s)	220
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	6 cut(s)	50, 194, 251, 326, 507, 584
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	3 cut(s)	9, 196, 391
HindII	GTYRAC	3 cut(s)	9, 196, 391
HinfI	GANTC	5 cut(s)	19, 268, 524, 668, 706
HpaI	GTTAAC	1 cut(s)	391
HpaII	CCGG	1 cut(s)	220
HphI	GGTGA	1 cut(s)	426
Hpy166II	GTNNAC	5 cut(s)	9, 196, 391, 421, 541
Hpy188I	TCNGA	3 cut(s)	100, 513, 673
Hpy188III	TCNNGA	3 cut(s)	272, 498, 710
Hpy8I	GTNNAC	5 cut(s)	9, 196, 391, 421, 541
HpyAV	CCTTC	2 cut(s)	514, 641
HpyCH4III	ACNGT	2 cut(s)	116, 356
HpyCH4V	TGCA	3 cut(s)	152, 399, 575
HpyF10VI	GCNNNNNNNGC	5 cut(s)	248, 356, 593, 602, 740
HpyF3I	CTNAG	1 cut(s)	528
Hsp92II	CATG	6 cut(s)	50, 194, 251, 326, 507, 584
HspAI	GCGC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	187
KspAI	GTTAAC	1 cut(s)	391
Kzo9I	GATC	2 cut(s)	187, 431
LmnI	GCTCC	1 cut(s)	330
Lsp1109I	GCAGC	3 cut(s)	391, 488, 608
MaeI	CTAG	1 cut(s)	683
MaeIII	GTNAC	1 cut(s)	700
MalI	GATC	2 cut(s)	189, 433
MbiI	CCGCTC	1 cut(s)	96
MboI	GATC	2 cut(s)	187, 431
MboII	GAAGA	2 cut(s)	310, 626
MluCI	AATT	2 cut(s)	64, 297
MlyI	GAGTC	1 cut(s)	518
MseI	TTAA	3 cut(s)	390, 492, 678
MspA1I	CMGCKG	1 cut(s)	599
MspI	CCGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	717
MwoI	GCNNNNNNNGC	5 cut(s)	248, 356, 593, 602, 740
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	2 cut(s)	187, 431
NlaIII	CATG	6 cut(s)	50, 194, 251, 326, 507, 584
NlaIV	GGNNCC	1 cut(s)	237
NmeAIII	GCCGAG	1 cut(s)	326
PaqCI	CACCTGC	1 cut(s)	404
PfeI	GAWTC	4 cut(s)	19, 268, 668, 706
PflMI	CCANNNNNTGG	2 cut(s)	170, 647
PkrI	GCNGC	6 cut(s)	95, 380, 383, 406, 478, 598
PleI	GAGTC	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	518
PspFI	CCCAGC	1 cut(s)	471
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	235
PvuII	CAGCTG	1 cut(s)	599
RsaI	GTAC	6 cut(s)	53, 80, 131, 542, 695, 725
RsaNI	GTAC	6 cut(s)	52, 79, 130, 541, 694, 724
SalI	GTCGAC	1 cut(s)	194
SaqAI	TTAA	3 cut(s)	390, 492, 678
SatI	GCNGC	6 cut(s)	94, 379, 382, 405, 477, 597
Sau3AI	GATC	2 cut(s)	187, 431
Sau96I	GGNCC	1 cut(s)	235
ScaI	AGTACT	1 cut(s)	695
SchI	GAGTC	1 cut(s)	518
SfcI	CTRYAG	1 cut(s)	417
SmlI	CTYRAG	3 cut(s)	272, 283, 482
SmoI	CTYRAG	3 cut(s)	272, 283, 482
Sse9I	AATT	2 cut(s)	64, 297
SspI	AATATT	1 cut(s)	315
SspMI	CTAG	1 cut(s)	683
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	2 cut(s)	116, 356
TaqI	TCGA	2 cut(s)	195, 497
TasI	AATT	2 cut(s)	64, 297
TatI	WGTACW	2 cut(s)	540, 693
TauI	GCSGC	3 cut(s)	96, 381, 384
TfiI	GAWTC	4 cut(s)	19, 268, 668, 706
Tru1I	TTAA	3 cut(s)	390, 492, 678
Tru9I	TTAA	3 cut(s)	390, 492, 678
TscAI	CASTG	3 cut(s)	211, 298, 361
TseI	GCWGC	3 cut(s)	404, 476, 596
TspDTI	ATGAA	3 cut(s)	17, 32, 626
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	3 cut(s)	211, 298, 361
Van91I	CCANNNNNTGG	2 cut(s)	170, 647
XapI	RAATTY	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44
XmiI	GTMKAC	2 cut(s)	195, 420
XspI	CTAG	1 cut(s)	683
ZrmI	AGTACT	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.