Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009030

Physical Location & Seq

Genomic Coordinates Reverse (-)

28693479 .. 28694720

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g26050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCTGGTAGTAATGAAGTCAACGTCAATGAATCCAAGAAAGTTGTCCCTCTCAACACATGGGTACTAATCTCCAATTTCAAGCTGGCTTACAACCTCCTCCGCCGTGCCGACGGAACATTCAACCGCGAGCTGGCGGAGTTCCTCGACCGAAAAGTCCCCGCCAACACAGTTCCGGTTGACGGGGTTTTCTCGTTTGATCACGTCGACAGAGCCACCGGCCTCCTCAACCGTGTTTACCAGTTTGCGCCCCAAAACGAGTCTCAGTGGGGTATTGTGAATCTTGAGCAGCCCTTGAGCACCACCGAGGTCGTCCCGGTCATAATCTTTTTCCACGGCGGAAGCTTCACTCATTCCTCCGCCAACAGCGCCATCTACGATACTTTCTGCCGCCGCCTTGTCAACACTTGCAAGGCGGTTGTAGTCTCCGTTAACTACCGCCGTTCGCCAGAACATCGGTATCCTTGTGCTTATGAGGACGGATGGGCGGCTCTCAAGTGGGTGAAATCGAGAAAGTGGCTGCAGAGCGGGAAGGGGAAGGACTTGAAAGTTCATGTCTACTTGGCTGGAGACAGCTCCGGCGGCAACATTGCTCACCACGTCGCGGTGAAGGCAGCAGAAGCGGAGGTTGAGGTGATCGGAAACATCCTTCTCCACCCGATGTTTGCAGGGCAAAAGAGAACGGAATCAGAGAAGAGATTGGACGGGAAGTACTTCGTAACGATACAAGACCGCGACTGGTACTGGCGGGCATTTCTCCCCGAAGGCGAAGATAGAGATCGATCCGGCGTGTCACGTTTTCGGCCCGAGGGACAAGAGCCTCGAGGGCTTGAAATTTCCCAAGAGTCTCGTTGTTGTGGCTGGCTTCGATCTTATGCAAGATTGGCAATTGGCCTATGTGCAAGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009311 GO:0009312 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009755 GO:0009791 GO:0009892 GO:0009908 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010154 GO:0010325 GO:0010331 GO:0010468 GO:0010476 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0016051 GO:0016787 GO:0019222 GO:0019840 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0031406 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044238 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048518 GO:0048519 GO:0048522 GO:0048530 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0080154 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901576 GO:1901700 GO:1901701 GO:1905392 GO:1905516 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

304

Amino Acids

34.24

Weight (kDa)

8.97

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	97 - 211	7.6e-12	BD-FAE
COesterase	PF00135	100 - 169	7.4e-06	Carboxylesterase family
Abhydrolase_3	PF07859	108 - 265	1.7e-46	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63010
fragaria_vesca	FvH4_2g24370 FvH4_2g24370 FvH4_3g11720
malus_domestica	MD03G1273300.v1.1 MD11G1296000.v1.1
prunus_persica	Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1
pyrus_communis	pycom03g21780 pycom11g26050
rosa_chinensis	RchiOBHm_Chr6g0292241
rosa_laevigata	RLG00000012050
rosa_multiflora	Rmu_sc0002993.1_g000009
rosa_roxburghii	Rroxscaffold_7G00175310
rosa_rugosa	Rorug06G0224800
rosa_samantha	Rh6AG337800 Rh6BG345100 Rh6CG352200 Rh6DG338100
rosa_wichuraiana	Rw6G029420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
AbsI	CCTCGAGG	1 cut(s)	822
AccBSI	CCGCTC	1 cut(s)	528
AccI	GTMKAC	2 cut(s)	207, 558
AccII	CGCG	3 cut(s)	129, 605, 735
AclWI	GGATC	1 cut(s)	777
AcsI	RAATTY	1 cut(s)	834
AfaI	GTAC	3 cut(s)	66, 713, 743
AfiI	CCNNNNNNNGG	3 cut(s)	133, 182, 604
AgsI	TTSAA	4 cut(s)	82, 124, 547, 833
AjiI	CACGTC	2 cut(s)	205, 601
AluBI	AGCT	4 cut(s)	85, 133, 345, 576
AluI	AGCT	4 cut(s)	85, 133, 345, 576
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	4 cut(s)	267, 430, 564, 852
AlwI	GGATC	1 cut(s)	777
Ama87I	CYCGRG	2 cut(s)	806, 822
AoxI	GGCC	3 cut(s)	220, 803, 892
ApeKI	GCWGC	3 cut(s)	289, 520, 614
ApoI	RAATTY	1 cut(s)	834
Asp700I	GAANNNNTTC	1 cut(s)	713
AspLEI	GCGC	2 cut(s)	250, 371
AspS9I	GGNCC	1 cut(s)	804
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	4 cut(s)	514, 587, 619, 646
AvaI	CYCGRG	2 cut(s)	806, 822
BaeI	ACNNNNGTAYC	2 cut(s)	443, 476
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	3 cut(s)	301, 507, 626
BccI	CCATC	2 cut(s)	380, 477
BceAI	ACGGC	3 cut(s)	90, 352, 426
BciVI	GTATCC	1 cut(s)	471
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	4 cut(s)	267, 430, 564, 852
BfmI	CTRYAG	1 cut(s)	521
BfoI	RGCGCY	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	471
BglI	GCCNNNNNGGC	1 cut(s)	826
BisI	GCNGC	7 cut(s)	290, 391, 394, 489, 521, 583, 615
BlsI	GCNGC	7 cut(s)	291, 392, 395, 490, 522, 584, 616
BmcAI	AGTACT	1 cut(s)	713
Bme1390I	CCNGG	1 cut(s)	317
BmeT110I	CYCGRG	2 cut(s)	806, 822
BmgBI	CACGTC	2 cut(s)	205, 601
BmgT120I	GGNCC	1 cut(s)	804
BmrFI	CCNGG	1 cut(s)	317
BpmI	CTGGAG	1 cut(s)	588
BpuEI	CTTGAG	3 cut(s)	305, 316, 479
BpuMI	CCSGG	1 cut(s)	317
Bsa29I	ATCGAT	1 cut(s)	781
BsaBI	GATNNNNATC	1 cut(s)	777
BsaJI	CCNNGG	3 cut(s)	306, 334, 807
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 182, 604
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	3 cut(s)	241, 743, 749
Bse3DI	GCAATG	1 cut(s)	588
Bse8I	GATNNNNATC	1 cut(s)	777
BseCI	ATCGAT	1 cut(s)	781
BseDI	CCNNGG	3 cut(s)	306, 334, 807
BseGI	GGATG	2 cut(s)	488, 645
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	3 cut(s)	133, 182, 604
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	3 cut(s)	241, 743, 749
BseRI	GAGGAG	2 cut(s)	89, 215
BseXI	GCAGC	3 cut(s)	301, 507, 626
Bsh1236I	CGCG	3 cut(s)	129, 605, 735
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	3 cut(s)	222, 805, 894
BshVI	ATCGAT	1 cut(s)	781
BsiEI	CGRYCG	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	302
BsiHKCI	CYCGRG	2 cut(s)	806, 822
BsiSI	CCGG	5 cut(s)	176, 219, 317, 579, 786
BslFI	GGGAC	4 cut(s)	32, 143, 299, 825
BslI	CCNNNNNNNGG	3 cut(s)	133, 182, 604
BsmAI	GTCTC	4 cut(s)	267, 430, 564, 852
BsmFI	GGGAC	4 cut(s)	32, 143, 299, 825
BsnI	GGCC	3 cut(s)	222, 805, 894
BsoBI	CYCGRG	2 cut(s)	806, 822
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	5 cut(s)	199, 636, 778, 782, 869
BspANI	GGCC	3 cut(s)	222, 805, 894
BspCNI	CTCAG	1 cut(s)	277
BspDI	ATCGAT	1 cut(s)	781
BspFNI	CGCG	3 cut(s)	129, 605, 735
BspMAI	CTGCAG	1 cut(s)	525
BspPI	GGATC	1 cut(s)	777
BsrBI	CCGCTC	1 cut(s)	528
BsrDI	GCAATG	1 cut(s)	588
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	3 cut(s)	241, 743, 749
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	306, 334, 807
BssMI	GATC	5 cut(s)	199, 636, 778, 782, 869
Bst4CI	ACNGT	2 cut(s)	172, 233
Bst6I	CTCTTC	1 cut(s)	689
BstC8I	GCNNGC	5 cut(s)	87, 131, 135, 750, 863
BstDEI	CTNAG	1 cut(s)	264
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	2 cut(s)	488, 645
BstFNI	CGCG	3 cut(s)	129, 605, 735
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	2 cut(s)	250, 371
BstKTI	GATC	5 cut(s)	202, 639, 781, 785, 872
BstMAI	GTCTC	4 cut(s)	267, 430, 564, 852
BstMBI	GATC	5 cut(s)	199, 636, 778, 782, 869
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	6 cut(s)	368, 582, 611, 620, 826, 884
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	521
BstUI	CGCG	3 cut(s)	129, 605, 735
BstV1I	GCAGC	3 cut(s)	301, 507, 626
Bsu15I	ATCGAT	1 cut(s)	781
BsuI	GTATCC	1 cut(s)	471
BsuRI	GGCC	3 cut(s)	222, 805, 894
BsuTUI	ATCGAT	1 cut(s)	781
BtgI	CCRYGG	1 cut(s)	334
BtrI	CACGTC	2 cut(s)	205, 601
BtsCI	GGATG	2 cut(s)	488, 645
BtsIMutI	CAGTG	1 cut(s)	272
Cac8I	GCNNGC	5 cut(s)	87, 131, 135, 750, 863
CfoI	GCGC	2 cut(s)	250, 371
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	804
ClaI	ATCGAT	1 cut(s)	781
Csp6I	GTAC	3 cut(s)	65, 712, 742
CviAII	CATG	2 cut(s)	60, 554
CviQI	GTAC	3 cut(s)	65, 712, 742
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	5 cut(s)	201, 638, 780, 784, 871
DpnII	GATC	5 cut(s)	199, 636, 778, 782, 869
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
Eam1104I	CTCTTC	1 cut(s)	689
EarI	CTCTTC	1 cut(s)	689
EciI	GGCGGA	4 cut(s)	92, 152, 349, 354
Eco88I	CYCGRG	2 cut(s)	806, 822
FaeI	CATG	2 cut(s)	63, 557
FaiI	YATR	6 cut(s)	61, 323, 474, 555, 876, 898
FaqI	GGGAC	4 cut(s)	32, 143, 299, 825
FatI	CATG	2 cut(s)	59, 553
FauI	CCCGC	3 cut(s)	169, 521, 741
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	2 cut(s)	207, 558
Fnu4HI	GCNGC	7 cut(s)	290, 391, 394, 489, 521, 583, 615
FokI	GGATG	2 cut(s)	495, 632
Fsp4HI	GCNGC	7 cut(s)	290, 391, 394, 489, 521, 583, 615
GlaI	GCGC	2 cut(s)	249, 370
GluI	GCNGC	7 cut(s)	290, 391, 394, 489, 521, 583, 615
GsuI	CTGGAG	1 cut(s)	588
HaeII	RGCGCY	1 cut(s)	372
HaeIII	GGCC	3 cut(s)	222, 805, 894
HapII	CCGG	5 cut(s)	176, 219, 317, 579, 786
HhaI	GCGC	2 cut(s)	250, 371
Hin1II	CATG	2 cut(s)	63, 557
Hin6I	GCGC	2 cut(s)	248, 369
HinP1I	GCGC	2 cut(s)	248, 369
HincII	GTYRAC	5 cut(s)	22, 181, 208, 403, 433
HindII	GTYRAC	5 cut(s)	22, 181, 208, 403, 433
HindIII	AAGCTT	1 cut(s)	343
HinfI	GANTC	5 cut(s)	32, 260, 280, 686, 845
HpaI	GTTAAC	1 cut(s)	433
HpaII	CCGG	5 cut(s)	176, 219, 317, 579, 786
HphI	GGTGA	4 cut(s)	514, 587, 619, 646
Hpy166II	GTNNAC	7 cut(s)	22, 181, 208, 238, 403, 433, 559
Hpy188I	TCNGA	2 cut(s)	641, 691
Hpy188III	TCNNGA	2 cut(s)	284, 510
Hpy8I	GTNNAC	7 cut(s)	22, 181, 208, 238, 403, 433, 559
Hpy99I	CGWCG	3 cut(s)	116, 209, 605
HpyAV	CCTTC	5 cut(s)	526, 532, 604, 659, 758
HpyCH4III	ACNGT	2 cut(s)	172, 233
HpyCH4IV	ACGT	4 cut(s)	24, 204, 600, 796
HpyCH4V	TGCA	5 cut(s)	411, 523, 668, 878, 902
HpyF10VI	GCNNNNNNNGC	6 cut(s)	368, 582, 611, 620, 826, 884
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	4 cut(s)	24, 204, 600, 796
Hsp92II	CATG	2 cut(s)	63, 557
HspAI	GCGC	2 cut(s)	248, 369
Ksp22I	TGATCA	1 cut(s)	199
KspAI	GTTAAC	1 cut(s)	433
Kzo9I	GATC	5 cut(s)	199, 636, 778, 782, 869
LmnI	GCTCC	1 cut(s)	581
Lsp1109I	GCAGC	3 cut(s)	301, 507, 626
MaeII	ACGT	4 cut(s)	24, 204, 600, 796
MaeIII	GTNAC	2 cut(s)	718, 792
MalI	GATC	5 cut(s)	201, 638, 780, 784, 871
MbiI	CCGCTC	1 cut(s)	528
MboI	GATC	5 cut(s)	199, 636, 778, 782, 869
MboII	GAAGA	2 cut(s)	706, 782
MfeI	CAATTG	1 cut(s)	888
MhlI	GDGCHC	1 cut(s)	302
MluCI	AATT	3 cut(s)	76, 834, 888
MlyI	GAGTC	2 cut(s)	269, 854
MroXI	GAANNNNTTC	1 cut(s)	713
MseI	TTAA	2 cut(s)	432, 910
MspI	CCGG	5 cut(s)	176, 219, 317, 579, 786
MspR9I	CCNGG	1 cut(s)	317
MunI	CAATTG	1 cut(s)	888
MvnI	CGCG	3 cut(s)	129, 605, 735
MwoI	GCNNNNNNNGC	6 cut(s)	368, 582, 611, 620, 826, 884
NciI	CCSGG	1 cut(s)	317
NdeII	GATC	5 cut(s)	199, 636, 778, 782, 869
NlaIII	CATG	2 cut(s)	63, 557
NmuCI	GTSAC	1 cut(s)	792
PaeR7I	CTCGAG	1 cut(s)	822
PdmI	GAANNNNTTC	1 cut(s)	713
PfeI	GAWTC	3 cut(s)	32, 280, 686
PkrI	GCNGC	7 cut(s)	291, 392, 395, 490, 522, 584, 616
PleI	GAGTC	2 cut(s)	268, 853
PpsI	GAGTC	2 cut(s)	268, 853
PspPI	GGNCC	1 cut(s)	804
PspXI	VCTCGAGB	1 cut(s)	822
PstI	CTGCAG	1 cut(s)	525
RsaI	GTAC	3 cut(s)	66, 713, 743
RsaNI	GTAC	3 cut(s)	65, 712, 742
SalI	GTCGAC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	432, 910
SatI	GCNGC	7 cut(s)	290, 391, 394, 489, 521, 583, 615
Sau3AI	GATC	5 cut(s)	199, 636, 778, 782, 869
Sau96I	GGNCC	1 cut(s)	804
ScaI	AGTACT	1 cut(s)	713
SchI	GAGTC	2 cut(s)	269, 854
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	302
SfcI	CTRYAG	1 cut(s)	521
Sfr274I	CTCGAG	1 cut(s)	822
SlaI	CTCGAG	1 cut(s)	822
SmlI	CTYRAG	4 cut(s)	284, 295, 494, 822
SmoI	CTYRAG	4 cut(s)	284, 295, 494, 822
Sse9I	AATT	3 cut(s)	76, 834, 888
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	172, 233
TaiI	ACGT	4 cut(s)	27, 207, 603, 799
TaqI	TCGA	6 cut(s)	147, 207, 509, 781, 823, 868
TaqII	GACCGA	1 cut(s)	165
TasI	AATT	3 cut(s)	76, 834, 888
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	4 cut(s)	393, 396, 491, 585
TfiI	GAWTC	3 cut(s)	32, 280, 686
Tru1I	TTAA	2 cut(s)	432, 910
Tru9I	TTAA	2 cut(s)	432, 910
TscAI	CASTG	1 cut(s)	272
TseFI	GTSAC	1 cut(s)	792
TseI	GCWGC	3 cut(s)	289, 520, 614
Tsp45I	GTSAC	1 cut(s)	792
TspDTI	ATGAA	3 cut(s)	30, 45, 542
TspGWI	ACGGA	4 cut(s)	129, 418, 495, 698
TspRI	CASTG	1 cut(s)	272
XapI	RAATTY	1 cut(s)	834
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XhoI	CTCGAG	1 cut(s)	822
XmiI	GTMKAC	2 cut(s)	207, 558
XmnI	GAANNNNTTC	1 cut(s)	713
ZrmI	AGTACT	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.