Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009030

Physical Location & Seq

Genomic Coordinates Reverse (-)

36013055 .. 36013793

Gene Structure 739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0224800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGGGAGAGTGCGAGTTTAAGAAGGTGAGGGTGCTAGGGCTCATTTCGATTCAGCCGTTCTTAAACAGAGAGGAGAGAACAGAATCAGAGATCCGATTGGGTCGGGGTGTGCTGGGTGTGGACTTGACGGACTGGTGTTGGAGGTGGTGGAAGAGCTACTGTGAAAAATCCAGTCTCACAAAATCACAATCTGGGTGTGAGCCACCACCTTTGGAATCGTCGAAGTTCTCACCGGAAAAGGGAATTTCGTTGTCGTTAAAGAGGGGTTTGAACCCGAAACAGAAACATAGATCGGTTTCGTCTCACTCGAATTCTTCGAATTCATCTCCGGAGGGTGAAATTTTCTCGCCGACTAAGAGAGTTTCTGGCAAGAAGCAATGTTCTGAATCGAAATCGAAATCTGGGTGGTTGTCTTCTCCGTTGGGTTCTTGCAATTTGTTGAGGGATGATTCTTCTTCACCGCCGAGGAAAGCCGTATGCTTCTGGTGTTCTCCAAAGACAAAAAGTGCTTCGTCTCAAAGAAAGAGCAAGGAAAATGGGGGCATTGGTGGTGGCCTTAGTCTTATCGGATTTGGGAAGTTTTTAGAAGAAAGAGCAAAGCAAGATGATAAAGAAGGCGATGAAAAAAGAGAAGATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009311 GO:0009312 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009755 GO:0009791 GO:0009892 GO:0009908 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010154 GO:0010325 GO:0010331 GO:0010468 GO:0010476 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0016051 GO:0016787 GO:0019222 GO:0019840 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0031406 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044238 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048518 GO:0048519 GO:0048522 GO:0048530 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0080154 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901576 GO:1901700 GO:1901701 GO:1905392 GO:1905516 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

214

Amino Acids

23.71

Weight (kDa)

9.34

Isoelectric Point (pI)

68.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63010
fragaria_vesca	FvH4_2g24370 FvH4_2g24370 FvH4_3g11720
malus_domestica	MD03G1273300.v1.1 MD11G1296000.v1.1
prunus_persica	Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1
pyrus_communis	pycom03g21780 pycom11g26050
rosa_chinensis	RchiOBHm_Chr6g0292241
rosa_laevigata	RLG00000012050
rosa_multiflora	Rmu_sc0002993.1_g000009
rosa_roxburghii	Rroxscaffold_7G00175310
rosa_rugosa	Rorug06G0224800
rosa_samantha	Rh6AG337800 Rh6BG345100 Rh6CG352200 Rh6DG338100
rosa_wichuraiana	Rw6G029420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	331
AciI	CCGC	2 cut(s)	5, 464
AclWI	GGATC	1 cut(s)	88
AcsI	RAATTY	4 cut(s)	246, 313, 322, 342
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgsI	TTSAA	1 cut(s)	274
AluBI	AGCT	1 cut(s)	159
AluI	AGCT	1 cut(s)	159
Alw26I	GTCTC	3 cut(s)	182, 309, 522
AlwI	GGATC	1 cut(s)	88
Aor13HI	TCCGGA	1 cut(s)	331
AoxI	GGCC	1 cut(s)	556
ApoI	RAATTY	4 cut(s)	246, 313, 322, 342
AsuHPI	GGTGA	4 cut(s)	40, 225, 350, 453
AsuII	TTCGAA	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	408
BceAI	ACGGC	2 cut(s)	43, 461
BcoDI	GTCTC	3 cut(s)	182, 309, 522
BfaI	CTAG	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	408
Bpu14I	TTCGAA	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	467
BsaWI	WCCGGW	2 cut(s)	235, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse1I	ACTGG	2 cut(s)	140, 174
Bse3DI	GCAATG	1 cut(s)	386
BseAI	TCCGGA	1 cut(s)	331
BseDI	CCNNGG	1 cut(s)	467
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseMI	GCAATG	1 cut(s)	386
BseNI	ACTGG	2 cut(s)	140, 174
BseRI	GAGGAG	1 cut(s)	89
BseYI	CCCAGC	1 cut(s)	115
BshFI	GGCC	1 cut(s)	558
BsiSI	CCGG	2 cut(s)	236, 332
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmAI	GTCTC	3 cut(s)	182, 309, 522
BsmBI	CGTCTC	2 cut(s)	309, 522
BsnI	GGCC	1 cut(s)	558
Bsp119I	TTCGAA	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp13I	TCCGGA	1 cut(s)	331
Bsp143I	GATC	3 cut(s)	93, 293, 637
BspACI	CCGC	2 cut(s)	5, 464
BspANI	GGCC	1 cut(s)	558
BspEI	TCCGGA	1 cut(s)	331
BspPI	GGATC	1 cut(s)	88
BspQI	GCTCTTC	1 cut(s)	149
BspT104I	TTCGAA	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	386
BsrI	ACTGG	2 cut(s)	140, 174
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	3 cut(s)	93, 293, 637
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	149
BstBI	TTCGAA	1 cut(s)	320
BstDEI	CTNAG	2 cut(s)	357, 560
BstF5I	GGATG	1 cut(s)	454
BstKTI	GATC	3 cut(s)	96, 296, 640
BstMAI	GTCTC	3 cut(s)	182, 309, 522
BstMBI	GATC	3 cut(s)	93, 293, 637
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	558
BtgZI	GCGATG	1 cut(s)	636
BtsCI	GGATG	1 cut(s)	454
CspCI	CAANNNNNGTGG	2 cut(s)	195, 230
CviJI	RGCY	6 cut(s)	43, 58, 159, 205, 476, 558
CviKI_1	RGCY	6 cut(s)	43, 58, 159, 205, 476, 558
DdeI	CTNAG	2 cut(s)	357, 560
DpnI	GATC	3 cut(s)	95, 295, 639
DpnII	GATC	3 cut(s)	93, 293, 637
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	45
EcoRI	GAATTC	2 cut(s)	313, 322
EcoT38I	GRGCYC	1 cut(s)	45
Esp3I	CGTCTC	2 cut(s)	309, 522
FaiI	YATR	2 cut(s)	291, 481
FokI	GGATG	1 cut(s)	461
FriOI	GRGCYC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	38
GsaI	CCCAGC	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	558
HapII	CCGG	2 cut(s)	236, 332
HinfI	GANTC	5 cut(s)	52, 86, 218, 389, 452
HpaII	CCGG	2 cut(s)	236, 332
HphI	GGTGA	4 cut(s)	40, 225, 350, 453
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	4 cut(s)	91, 98, 388, 572
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	2 cut(s)	19, 611
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4V	TGCA	1 cut(s)	435
HpyF3I	CTNAG	2 cut(s)	357, 560
Kpn2I	TCCGGA	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	93, 293, 637
LguI	GCTCTTC	1 cut(s)	149
LpnPI	CCDG	9 cut(s)	101, 121, 180, 187, 249, 345, 354, 390, 472
MaeI	CTAG	1 cut(s)	38
MalI	GATC	3 cut(s)	95, 295, 639
MboI	GATC	3 cut(s)	93, 293, 637
MboII	GAAGA	6 cut(s)	166, 309, 408, 447, 450, 602
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	5 cut(s)	246, 313, 322, 342, 436
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	7 cut(s)	24, 67, 138, 258, 328, 438, 462
MroI	TCCGGA	1 cut(s)	331
MseI	TTAA	3 cut(s)	21, 65, 260
MspI	CCGG	2 cut(s)	236, 332
NdeII	GATC	3 cut(s)	93, 293, 637
NmeAIII	GCCGAG	1 cut(s)	492
NspV	TTCGAA	1 cut(s)	320
PciSI	GCTCTTC	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	3 cut(s)	56, 308, 317
PfeI	GAWTC	5 cut(s)	52, 86, 218, 389, 452
PspFI	CCCAGC	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	93
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	3 cut(s)	21, 65, 260
Sau3AI	GATC	3 cut(s)	93, 293, 637
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	4 cut(s)	30, 149, 161, 214
SfuI	TTCGAA	1 cut(s)	320
Sse9I	AATT	5 cut(s)	246, 313, 322, 342, 436
SsiI	CCGC	2 cut(s)	5, 464
SspMI	CTAG	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	164
TaqI	TCGA	6 cut(s)	50, 224, 311, 320, 392, 398
TasI	AATT	5 cut(s)	246, 313, 322, 342, 436
TfiI	GAWTC	5 cut(s)	52, 86, 218, 389, 452
Tru1I	TTAA	3 cut(s)	21, 65, 260
Tru9I	TTAA	3 cut(s)	21, 65, 260
TspDTI	ATGAA	2 cut(s)	315, 639
TspGWI	ACGGA	2 cut(s)	146, 411
XapI	RAATTY	4 cut(s)	246, 313, 322, 342
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.