Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009030

Physical Location & Seq

Genomic Coordinates Reverse (-)

22011343 .. 22012748

Gene Structure 1406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g21780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCTGGTAGTAATGAAGTCAACGTCAATGAATCCAAGAAAGTTGTTCCGCTCAACACATGGGTACTAATCTCCAATTTCAAGCTAGCTTACAACCTCCTCCGCCGCGCTGACGGAACATTCAACCGCGAGCTGGCGGAGTTCCTCGAACGGAAAGTCCCTGCCAACATAACTCCGGTTGATGGGGTTTTCTCGTTTGATCACGTCGACACAGCCACCAGCCTCCTCAACCGTGTTTATAAATTTGCCCCCGGAAACGAGTCGCAATGGGGCATTCTGGATCTTGAGCAGCCCTTGAGCACCACCAAGGTCGTCCCGGTCATAATCTTCTTCCACGGTGGAAGCTTCACACATTCATCCGCCAACAGCGCCATCTACGACACCTTCTGCCGCCGCCTTGTCAACACTTGCAAGGCTGTTGTAGTCTCTGTAAACTACCGCCGTTCGCCGGAACATCGGTATCCTTGTGCTTATGAAGACGGATGGGCGGCTCTCAAGTGGGTGAAATCGAGAAAGTGGCTGCAGAGCGGGAAGGGTAAGGACTCGAAAGTTCACGTTTACCTAGCCGGAGACAGCTCGGGCGGCAACATTGCTCACCACGTCGCGGTCAAGGCGGCGGAAGCGGAGGTTGAGGTGCTCGGAAACATCCTTCTCCACCCGATGTTTGGGGGGCAGAAGAGAACAGAAACAGAGAAGAGACTGGATGGGAAGTACTTCGTAACAATACAAGACCGTGATTGGTACTGGCGGGCATTTCTGCCCGAAGGCGAAGACAGAGATCGATCCGGCGTGTCACGTTTTCGGCCCGAGGGACAAGAGCCTCGTGGGCTTGAAATTTCCCAAGAGTCTTGTTGTTGTGGCTGGTTTCGATCTCATGCAAGATTGGCAATTGGCTTATGTGGAAGGGCTAAAAAATGCAGGGCAGGATGTGAAGCTTCTCTTCTTAAAGCAGGCGACGATCGGGTTCTACTTCTTGCCGAACAACGAGCATTTCTACTGCCTCATGGAGGAGATGAAGAACTTCGTGAATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009311 GO:0009312 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009755 GO:0009791 GO:0009892 GO:0009908 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010154 GO:0010325 GO:0010331 GO:0010468 GO:0010476 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0016051 GO:0016787 GO:0019222 GO:0019840 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0031406 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044238 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048518 GO:0048519 GO:0048522 GO:0048530 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0080154 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901576 GO:1901700 GO:1901701 GO:1905392 GO:1905516 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

345

Amino Acids

38.58

Weight (kDa)

8.65

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63010
fragaria_vesca	FvH4_2g24370 FvH4_2g24370 FvH4_3g11720
malus_domestica	MD03G1273300.v1.1 MD11G1296000.v1.1
prunus_persica	Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1
pyrus_communis	pycom03g21780 pycom11g26050
rosa_chinensis	RchiOBHm_Chr6g0292241
rosa_laevigata	RLG00000012050
rosa_multiflora	Rmu_sc0002993.1_g000009
rosa_roxburghii	Rroxscaffold_7G00175310
rosa_rugosa	Rorug06G0224800
rosa_samantha	Rh6AG337800 Rh6BG345100 Rh6CG352200 Rh6DG338100
rosa_wichuraiana	Rw6G029420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
AccBSI	CCGCTC	2 cut(s)	52, 528
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	3 cut(s)	108, 129, 605
AclWI	GGATC	2 cut(s)	288, 777
AcsI	RAATTY	2 cut(s)	242, 834
AfaI	GTAC	3 cut(s)	66, 713, 743
AfiI	CCNNNNNNNGG	6 cut(s)	133, 182, 448, 604, 665, 1007
AgsI	TTSAA	3 cut(s)	82, 124, 833
AjiI	CACGTC	2 cut(s)	205, 601
AloI	GAACNNNNNNTCC	2 cut(s)	141, 173
AluBI	AGCT	6 cut(s)	85, 89, 133, 345, 576, 935
AluI	AGCT	6 cut(s)	85, 89, 133, 345, 576, 935
Alw21I	GWGCWC	2 cut(s)	302, 639
Alw26I	GTCTC	3 cut(s)	430, 564, 691
AlwI	GGATC	2 cut(s)	288, 777
Ama87I	CYCGRG	2 cut(s)	577, 806
AoxI	GGCC	1 cut(s)	803
ApeKI	GCWGC	2 cut(s)	289, 520
ApoI	RAATTY	2 cut(s)	242, 834
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
Asp700I	GAANNNNTTC	2 cut(s)	713, 1020
AspLEI	GCGC	2 cut(s)	110, 371
AspS9I	GGNCC	1 cut(s)	804
AsuC2I	CCSGG	2 cut(s)	252, 317
AsuHPI	GGTGA	2 cut(s)	514, 587
AsuNHI	GCTAGC	1 cut(s)	85
AvaI	CYCGRG	2 cut(s)	577, 806
BaeI	ACNNNNGTAYC	2 cut(s)	443, 476
BauI	CACGAG	1 cut(s)	822
BbsI	GAAGAC	2 cut(s)	483, 777
Bbv12I	GWGCWC	2 cut(s)	302, 639
BbvI	GCAGC	2 cut(s)	301, 507
BccI	CCATC	4 cut(s)	176, 380, 477, 698
BceAI	ACGGC	1 cut(s)	426
BciVI	GTATCC	1 cut(s)	471
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	2 cut(s)	252, 317
BcoDI	GTCTC	3 cut(s)	430, 564, 691
BfaI	CTAG	2 cut(s)	86, 563
BfmI	CTRYAG	1 cut(s)	521
BfoI	RGCGCY	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	471
BglI	GCCNNNNNGGC	1 cut(s)	826
BisI	GCNGC	8 cut(s)	106, 290, 391, 394, 489, 521, 583, 615
BlsI	GCNGC	8 cut(s)	107, 291, 392, 395, 490, 522, 584, 616
BmcAI	AGTACT	1 cut(s)	713
Bme1390I	CCNGG	2 cut(s)	252, 317
BmeT110I	CYCGRG	2 cut(s)	577, 806
BmgBI	CACGTC	2 cut(s)	205, 601
BmgT120I	GGNCC	1 cut(s)	804
BmrFI	CCNGG	2 cut(s)	252, 317
BmtI	GCTAGC	1 cut(s)	89
BpiI	GAAGAC	2 cut(s)	483, 777
BpuEI	CTTGAG	3 cut(s)	305, 316, 479
BpuMI	CCSGG	2 cut(s)	252, 317
Bsa29I	ATCGAT	1 cut(s)	781
BsaJI	CCNNGG	4 cut(s)	250, 306, 334, 807
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	6 cut(s)	133, 182, 448, 604, 665, 1007
Bse1I	ACTGG	2 cut(s)	705, 749
Bse3DI	GCAATG	2 cut(s)	272, 588
BseCI	ATCGAT	1 cut(s)	781
BseDI	CCNNGG	4 cut(s)	250, 306, 334, 807
BseGI	GGATG	5 cut(s)	356, 488, 645, 709, 932
BseLI	CCNNNNNNNGG	6 cut(s)	133, 182, 448, 604, 665, 1007
BseMI	GCAATG	2 cut(s)	272, 588
BseNI	ACTGG	2 cut(s)	705, 749
BseRI	GAGGAG	3 cut(s)	89, 215, 1023
BseXI	GCAGC	2 cut(s)	301, 507
Bsh1236I	CGCG	3 cut(s)	108, 129, 605
Bsh1285I	CGRYCG	1 cut(s)	961
BshFI	GGCC	1 cut(s)	805
BshVI	ATCGAT	1 cut(s)	781
BsiEI	CGRYCG	1 cut(s)	961
BsiHKAI	GWGCWC	2 cut(s)	302, 639
BsiHKCI	CYCGRG	2 cut(s)	577, 806
BsiSI	CCGG	6 cut(s)	176, 252, 317, 449, 567, 786
BslFI	GGGAC	3 cut(s)	143, 299, 825
BslI	CCNNNNNNNGG	6 cut(s)	133, 182, 448, 604, 665, 1007
BsmAI	GTCTC	3 cut(s)	430, 564, 691
BsmFI	GGGAC	3 cut(s)	143, 299, 825
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	1 cut(s)	805
BsoBI	CYCGRG	2 cut(s)	577, 806
Bsp1286I	GDGCHC	2 cut(s)	302, 639
Bsp143I	GATC	6 cut(s)	199, 280, 778, 782, 869, 958
BspANI	GGCC	1 cut(s)	805
BspDI	ATCGAT	1 cut(s)	781
BspFNI	CGCG	3 cut(s)	108, 129, 605
BspMAI	CTGCAG	1 cut(s)	525
BspOI	GCTAGC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	288, 777
BsrBI	CCGCTC	2 cut(s)	52, 528
BsrDI	GCAATG	2 cut(s)	272, 588
BsrI	ACTGG	2 cut(s)	705, 749
BssECI	CCNNGG	4 cut(s)	250, 306, 334, 807
BssMI	GATC	6 cut(s)	199, 280, 778, 782, 869, 958
BssSI	CACGAG	1 cut(s)	822
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	822
Bst4CI	ACNGT	3 cut(s)	233, 338, 734
Bst6I	CTCTTC	3 cut(s)	671, 689, 945
BstC8I	GCNNGC	5 cut(s)	87, 131, 135, 750, 952
BstDSI	CCRYGG	1 cut(s)	334
BstENI	CCTNNNNNAGG	1 cut(s)	1005
BstF5I	GGATG	5 cut(s)	356, 488, 645, 709, 932
BstFNI	CGCG	3 cut(s)	108, 129, 605
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	2 cut(s)	110, 371
BstKTI	GATC	6 cut(s)	202, 283, 781, 785, 872, 961
BstMAI	GTCTC	3 cut(s)	430, 564, 691
BstMBI	GATC	6 cut(s)	199, 280, 778, 782, 869, 958
BstMCI	CGRYCG	1 cut(s)	961
BstMWI	GCNNNNNNNGC	6 cut(s)	368, 582, 611, 620, 826, 884
BstSCI	CCNGG	2 cut(s)	250, 315
BstSFI	CTRYAG	1 cut(s)	521
BstUI	CGCG	3 cut(s)	108, 129, 605
BstV1I	GCAGC	2 cut(s)	301, 507
BstV2I	GAAGAC	2 cut(s)	483, 777
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
Bsu15I	ATCGAT	1 cut(s)	781
BsuI	GTATCC	1 cut(s)	471
BsuRI	GGCC	1 cut(s)	805
BsuTUI	ATCGAT	1 cut(s)	781
BtgI	CCRYGG	1 cut(s)	334
BtrI	CACGTC	2 cut(s)	205, 601
BtsCI	GGATG	5 cut(s)	356, 488, 645, 709, 932
Cac8I	GCNNGC	5 cut(s)	87, 131, 135, 750, 952
CfoI	GCGC	2 cut(s)	110, 371
Cfr13I	GGNCC	1 cut(s)	804
ClaI	ATCGAT	1 cut(s)	781
Csp6I	GTAC	3 cut(s)	65, 712, 742
CviAII	CATG	3 cut(s)	60, 875, 1004
CviQI	GTAC	3 cut(s)	65, 712, 742
DpnI	GATC	6 cut(s)	201, 282, 780, 784, 871, 960
DpnII	GATC	6 cut(s)	199, 280, 778, 782, 869, 958
Eam1104I	CTCTTC	3 cut(s)	671, 689, 945
EarI	CTCTTC	3 cut(s)	671, 689, 945
EciI	GGCGGA	4 cut(s)	92, 152, 349, 632
Eco130I	CCWWGG	1 cut(s)	306
Eco88I	CYCGRG	2 cut(s)	577, 806
EcoNI	CCTNNNNNAGG	1 cut(s)	1005
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	3 cut(s)	63, 878, 1007
FaiI	YATR	8 cut(s)	61, 170, 240, 323, 474, 876, 898, 1005
FalI	AAGNNNNNCTT	2 cut(s)	924, 956
FaqI	GGGAC	3 cut(s)	143, 299, 825
FatI	CATG	3 cut(s)	59, 874, 1003
FauI	CCCGC	2 cut(s)	521, 741
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	8 cut(s)	106, 290, 391, 394, 489, 521, 583, 615
FokI	GGATG	5 cut(s)	343, 495, 632, 716, 939
Fsp4HI	GCNGC	8 cut(s)	106, 290, 391, 394, 489, 521, 583, 615
FspBI	CTAG	2 cut(s)	86, 563
GlaI	GCGC	2 cut(s)	109, 370
GluI	GCNGC	8 cut(s)	106, 290, 391, 394, 489, 521, 583, 615
HaeII	RGCGCY	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	805
HapII	CCGG	6 cut(s)	176, 252, 317, 449, 567, 786
HhaI	GCGC	2 cut(s)	110, 371
Hin1II	CATG	3 cut(s)	63, 878, 1007
Hin6I	GCGC	2 cut(s)	108, 369
HinP1I	GCGC	2 cut(s)	108, 369
HincII	GTYRAC	3 cut(s)	22, 208, 403
HindII	GTYRAC	3 cut(s)	22, 208, 403
HindIII	AAGCTT	2 cut(s)	343, 933
HinfI	GANTC	5 cut(s)	32, 260, 542, 845, 1028
HpaII	CCGG	6 cut(s)	176, 252, 317, 449, 567, 786
HphI	GGTGA	2 cut(s)	514, 587
Hpy166II	GTNNAC	6 cut(s)	22, 208, 403, 433, 553, 559
Hpy188I	TCNGA	1 cut(s)	641
Hpy188III	TCNNGA	5 cut(s)	278, 284, 510, 1025, 1032
Hpy8I	GTNNAC	6 cut(s)	22, 208, 403, 433, 553, 559
Hpy99I	CGWCG	3 cut(s)	209, 605, 959
HpyAV	CCTTC	5 cut(s)	394, 526, 659, 758, 897
HpyCH4III	ACNGT	3 cut(s)	233, 338, 734
HpyCH4IV	ACGT	5 cut(s)	24, 204, 555, 600, 796
HpyCH4V	TGCA	4 cut(s)	411, 523, 878, 918
HpyF10VI	GCNNNNNNNGC	6 cut(s)	368, 582, 611, 620, 826, 884
HpySE526I	ACGT	5 cut(s)	24, 204, 555, 600, 796
Hsp92II	CATG	3 cut(s)	63, 878, 1007
HspAI	GCGC	2 cut(s)	108, 369
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	6 cut(s)	199, 280, 778, 782, 869, 958
Lsp1109I	GCAGC	2 cut(s)	301, 507
MaeI	CTAG	2 cut(s)	86, 563
MaeII	ACGT	5 cut(s)	24, 204, 555, 600, 796
MaeIII	GTNAC	2 cut(s)	718, 792
MalI	GATC	6 cut(s)	201, 282, 780, 784, 871, 960
MbiI	CCGCTC	2 cut(s)	52, 528
MboI	GATC	6 cut(s)	199, 280, 778, 782, 869, 958
MboII	GAAGA	8 cut(s)	319, 322, 488, 688, 706, 782, 932, 1028
MfeI	CAATTG	1 cut(s)	888
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	2 cut(s)	302, 639
MluCI	AATT	4 cut(s)	76, 242, 834, 888
MlyI	GAGTC	3 cut(s)	269, 536, 854
MroXI	GAANNNNTTC	2 cut(s)	713, 1020
MseI	TTAA	1 cut(s)	945
MspI	CCGG	6 cut(s)	176, 252, 317, 449, 567, 786
MspR9I	CCNGG	2 cut(s)	252, 317
MunI	CAATTG	1 cut(s)	888
Mva1269I	GAATGC	1 cut(s)	273
MvnI	CGCG	3 cut(s)	108, 129, 605
MwoI	GCNNNNNNNGC	6 cut(s)	368, 582, 611, 620, 826, 884
NciI	CCSGG	2 cut(s)	252, 317
NdeII	GATC	6 cut(s)	199, 280, 778, 782, 869, 958
NheI	GCTAGC	1 cut(s)	85
NlaIII	CATG	3 cut(s)	63, 878, 1007
NmuCI	GTSAC	1 cut(s)	792
PctI	GAATGC	1 cut(s)	273
PdmI	GAANNNNTTC	2 cut(s)	713, 1020
PfeI	GAWTC	2 cut(s)	32, 1028
PkrI	GCNGC	8 cut(s)	107, 291, 392, 395, 490, 522, 584, 616
Ple19I	CGATCG	1 cut(s)	961
PleI	GAGTC	3 cut(s)	268, 536, 853
PpsI	GAGTC	3 cut(s)	268, 536, 853
PsiI	TTATAA	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	804
PstI	CTGCAG	1 cut(s)	525
PsuI	RGATCY	1 cut(s)	280
PvuI	CGATCG	1 cut(s)	961
RsaI	GTAC	3 cut(s)	66, 713, 743
RsaNI	GTAC	3 cut(s)	65, 712, 742
SalI	GTCGAC	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	945
SatI	GCNGC	8 cut(s)	106, 290, 391, 394, 489, 521, 583, 615
Sau3AI	GATC	6 cut(s)	199, 280, 778, 782, 869, 958
Sau96I	GGNCC	1 cut(s)	804
ScaI	AGTACT	1 cut(s)	713
SchI	GAGTC	3 cut(s)	269, 536, 854
ScrFI	CCNGG	2 cut(s)	252, 317
SduI	GDGCHC	2 cut(s)	302, 639
SfcI	CTRYAG	1 cut(s)	521
SmlI	CTYRAG	3 cut(s)	284, 295, 494
SmoI	CTYRAG	3 cut(s)	284, 295, 494
Sse9I	AATT	4 cut(s)	76, 242, 834, 888
SspMI	CTAG	2 cut(s)	86, 563
StyD4I	CCNGG	2 cut(s)	250, 315
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	3 cut(s)	233, 338, 734
TaiI	ACGT	5 cut(s)	27, 207, 558, 603, 799
TaqI	TCGA	6 cut(s)	147, 207, 509, 545, 781, 868
TasI	AATT	4 cut(s)	76, 242, 834, 888
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	6 cut(s)	108, 393, 396, 491, 585, 617
TfiI	GAWTC	2 cut(s)	32, 1028
Tru1I	TTAA	1 cut(s)	945
Tru9I	TTAA	1 cut(s)	945
TseFI	GTSAC	1 cut(s)	792
TseI	GCWGC	2 cut(s)	289, 520
Tsp45I	GTSAC	1 cut(s)	792
TspDTI	ATGAA	5 cut(s)	30, 45, 345, 489, 1029
TspGWI	ACGGA	3 cut(s)	129, 166, 495
XagI	CCTNNNNNAGG	1 cut(s)	1005
XapI	RAATTY	2 cut(s)	242, 834
XcmI	CCANNNNNNNNNTGG	1 cut(s)	662
XmiI	GTMKAC	1 cut(s)	207
XmnI	GAANNNNTTC	2 cut(s)	713, 1020
XspI	CTAG	2 cut(s)	86, 563
ZrmI	AGTACT	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.