Rmu_sc0002993.1_g000009

Gibberellin receptor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002993.1
Physical Location & Seq
Reverse (-)
22004 .. 26920
4917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002993.1_g000009.1.cds

Sequence Viewer

Length: 1350 bp
atggctggtagtaatgaagtcaacctcaatgaatccaagagggttgttccactcaatacatgggtactcatctccaatttcaagctggcgtacaatctcctccgccgctccgacggaacattcaaccgtgagctggcggagtaccttgaacgcaaagtccctgcaaacacattcccagttgatggtgtcgtctcctttgatcatgtcgacagaagcactggcctcctcaaccggatttaccaaatggcccccgcaaaccatgctcaatggggcattgtgaatcttgagaaacccttgagcaccactgaaattgtgcctgtcataatattcttccatggtgggagcttcactcactcctcggccaacagtgctatctatgacactttctgccgccgccttgttaacacctgcaaggctgctgtggtgtctgtagactaccgccgatcacctgaacatcggtatccctgtgcttatgatgacggctgggcagctctcaagtgggttaagtcgagaacatggcttcagagcgggaaggactctaaggtttatgtgtacttggctggagatagttctggtggcaacattgcacaccatgttgctgtgagggcagctgaagctgaagttgaggttttggggaacatccttcttcatccaatgtttggcgggcaaatgaggactgaatccgaggttaaactagatgggaagtactttgtaacgattcaagaccgcgattggtactggcgagcctttttgcctgaaggagaagatagagaccacccggcatgtaatccatttggccccagagataaggggattgaagggctcaagttccccaaaagtcttgttgttgtggctggtttggaccttatgcaagattggcaattggcttatgttgaagggctcaagaattcggggcaggaggtaaagctcattttcctgaaggaggcgacaattggcgaaagcttgactctttaccctggtgcatccaccccatcttttgcagtgatcatcatcgccagccaaggagaatcagaactcgcttatgctatatcggcggaagagctaccattgataatagcttatcctagagggtcgcccacgacgcctgctctcgccatcgcggcgccgaaactcgtcgtcgtgctctccgcggccaggctcgacgccaagccaacgacccgattccggcttggagagcttcccggacatctgacgaacaaaaccggcgaagcccagaggggttgggatcgtggagttagatggcgtcatcctctggtggtccgacggtgggacggagcggcgatggtggaggtcgacatcgacggtggagtggtgggcgtggtggcttag

Protein Analysis

449

Amino Acids

49.62

Weight (kDa)

6.85

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 416
Acc36I ACCTGC 1 cut(s) 416
AccB1I GGYRCC 1 cut(s) 1123
AccB7I CCANNNNNTGG 2 cut(s) 182, 659
AccBSI CCGCTC 3 cut(s) 108, 528, 1298
AccI GTMKAC 3 cut(s) 207, 432, 1314
AccII CGCG 3 cut(s) 729, 1121, 1151
AclWI GGATC 1 cut(s) 1254
AcoI YGGCCR 2 cut(s) 360, 1152
AcsI RAATTY 1 cut(s) 907
AcuI CTGAAG 5 cut(s) 506, 633, 639, 777, 959
AcyI GRCGYC 4 cut(s) 1103, 1124, 1164, 1264
AfaI GTAC 6 cut(s) 66, 92, 143, 554, 707, 737
AfiI CCNNNNNNNGG 7 cut(s) 133, 182, 659, 943, 1155, 1185, 1288
AgsI TTSAA 6 cut(s) 82, 124, 149, 722, 818, 896
AjnI CCWGG 2 cut(s) 976, 1154
AloI GAACNNNNNNTCC 2 cut(s) 141, 173
Alw21I GWGCWC 2 cut(s) 302, 1146
Alw26I GTCTC 2 cut(s) 196, 765
AlwI GGATC 1 cut(s) 1254
AoxI GGCC 5 cut(s) 220, 246, 360, 796, 1152
ApeKI GCWGC 3 cut(s) 416, 488, 608
ApoI RAATTY 1 cut(s) 907
AspLEI GCGC 1 cut(s) 1126
AspS9I GGNCC 4 cut(s) 247, 797, 862, 1279
AsuC2I CCSGG 2 cut(s) 779, 1203
AsuHPI GGTGA 1 cut(s) 438
AvaII GGWCC 2 cut(s) 862, 1279
BaeI ACNNNNGTAYC 2 cut(s) 443, 476
BanI GGYRCC 1 cut(s) 1123
BanII GRGCYC 2 cut(s) 825, 903
Bbv12I GWGCWC 2 cut(s) 302, 1146
BbvI GCAGC 3 cut(s) 403, 500, 620
BccI CCATC 6 cut(s) 176, 692, 1000, 1124, 1254, 1297
BceAI ACGGC 1 cut(s) 496
BciT130I CCWGG 2 cut(s) 978, 1156
BciVI GTATCC 1 cut(s) 471
BclI TGATCA 2 cut(s) 199, 1005
BcnI CCSGG 2 cut(s) 779, 1203
BcoDI GTCTC 2 cut(s) 196, 765
BfaI CTAG 2 cut(s) 695, 1086
BfmI CTRYAG 1 cut(s) 429
BfoI RGCGCY 1 cut(s) 1127
BfuAI ACCTGC 1 cut(s) 416
BfuI GTATCC 1 cut(s) 471
BglI GCCNNNNNGGC 1 cut(s) 1121
BisI GCNGC 9 cut(s) 106, 391, 394, 417, 489, 609, 1122, 1152, 1299
BlsI GCNGC 9 cut(s) 107, 392, 395, 418, 490, 610, 1123, 1153, 1300
BmcAI AGTACT 1 cut(s) 707
Bme1390I CCNGG 4 cut(s) 779, 978, 1156, 1203
Bme18I GGWCC 2 cut(s) 862, 1279
BmgT120I GGNCC 4 cut(s) 247, 797, 862, 1279
BmiI GGNNCC 3 cut(s) 249, 799, 1125
BmrFI CCNGG 4 cut(s) 779, 978, 1156, 1203
BmrI ACTGGG 1 cut(s) 170
BmsI GCATC 1 cut(s) 992
BmuI ACTGGG 1 cut(s) 170
BplI GAGNNNNNCTC 2 cut(s) 334, 366
BpmI CTGGAG 1 cut(s) 582
BpuEI CTTGAG 5 cut(s) 305, 316, 479, 809, 887
BpuMI CCSGG 2 cut(s) 779, 1203
BsaBI GATNNNNATC 1 cut(s) 1010
BsaHI GRCGYC 4 cut(s) 1103, 1124, 1164, 1264
BsaI GGTCTC 1 cut(s) 765
BsaJI CCNNGG 6 cut(s) 334, 357, 684, 976, 1021, 1149
BsaWI WCCGGW 1 cut(s) 231
Bsc4I CCNNNNNNNGG 7 cut(s) 133, 182, 659, 943, 1155, 1185, 1288
Bse118I RCCGGY 1 cut(s) 1223
Bse1I ACTGG 3 cut(s) 176, 223, 743
Bse3DI GCAATG 1 cut(s) 582
Bse8I GATNNNNATC 1 cut(s) 1010
BseBI CCWGG 2 cut(s) 978, 1156
BseDI CCNNGG 6 cut(s) 334, 357, 684, 976, 1021, 1149
BseGI GGATG 4 cut(s) 639, 649, 983, 1267
BseJI GATNNNNATC 1 cut(s) 1010
BseLI CCNNNNNNNGG 7 cut(s) 133, 182, 659, 943, 1155, 1185, 1288
BseMI GCAATG 1 cut(s) 582
BseNI ACTGG 3 cut(s) 176, 223, 743
BseRI GAGGAG 3 cut(s) 89, 215, 346
BseXI GCAGC 3 cut(s) 403, 500, 620
BseYI CCCAGC 1 cut(s) 483
Bsh1236I CGCG 3 cut(s) 729, 1121, 1151
BshFI GGCC 5 cut(s) 222, 248, 362, 798, 1154
BshNI GGYRCC 1 cut(s) 1123
BsiHKAI GWGCWC 2 cut(s) 302, 1146
BsiSI CCGG 5 cut(s) 232, 779, 1186, 1203, 1224
BslFI GGGAC 2 cut(s) 143, 1304
BslI CCNNNNNNNGG 7 cut(s) 133, 182, 659, 943, 1155, 1185, 1288
BsmAI GTCTC 2 cut(s) 196, 765
BsmBI CGTCTC 1 cut(s) 196
BsmFI GGGAC 2 cut(s) 143, 1304
BsnI GGCC 5 cut(s) 222, 248, 362, 798, 1154
Bso31I GGTCTC 1 cut(s) 765
Bsp1286I GDGCHC 4 cut(s) 302, 825, 903, 1146
Bsp143I GATC 4 cut(s) 199, 443, 1005, 1246
Bsp19I CCATGG 1 cut(s) 334
BspANI GGCC 5 cut(s) 222, 248, 362, 798, 1154
BspFNI CGCG 3 cut(s) 729, 1121, 1151
BspLI GGNNCC 3 cut(s) 249, 799, 1125
BspMI ACCTGC 1 cut(s) 416
BspPI GGATC 1 cut(s) 1254
BspQI GCTCTTC 1 cut(s) 1053
BspT107I GGYRCC 1 cut(s) 1123
BspTNI GGTCTC 1 cut(s) 765
BsrBI CCGCTC 3 cut(s) 108, 528, 1298
BsrDI GCAATG 1 cut(s) 582
BsrFI RCCGGY 1 cut(s) 1223
BsrI ACTGG 3 cut(s) 176, 223, 743
BssAI RCCGGY 1 cut(s) 1223
BssECI CCNNGG 6 cut(s) 334, 357, 684, 976, 1021, 1149
BssMI GATC 4 cut(s) 199, 443, 1005, 1246
BssNI GRCGYC 4 cut(s) 1103, 1124, 1164, 1264
BssT1I CCWWGG 2 cut(s) 334, 1021
Bst2UI CCWGG 2 cut(s) 978, 1156
Bst4CI ACNGT 4 cut(s) 128, 368, 1287, 1325
Bst6I CTCTTC 1 cut(s) 1053
BstACI GRCGYC 4 cut(s) 1103, 1124, 1164, 1264
BstAPI GCANNNNNTGC 1 cut(s) 260
BstC8I GCNNGC 6 cut(s) 87, 135, 665, 744, 1018, 1107
BstDEI CTNAG 2 cut(s) 540, 1347
BstDSI CCRYGG 2 cut(s) 334, 1149
BstENI CCTNNNNNAGG 1 cut(s) 941
BstF5I GGATG 4 cut(s) 639, 649, 983, 1267
BstFNI CGCG 3 cut(s) 729, 1121, 1151
BstH2I RGCGCY 1 cut(s) 1127
BstHHI GCGC 1 cut(s) 1126
BstKTI GATC 4 cut(s) 202, 446, 1008, 1249
BstMAI GTCTC 2 cut(s) 196, 765
BstMBI GATC 4 cut(s) 199, 443, 1005, 1246
BstMWI GCNNNNNNNGC 9 cut(s) 260, 368, 605, 614, 877, 1052, 1102, 1121, 1195
BstNI CCWGG 2 cut(s) 978, 1156
BstNSI RCATGY 1 cut(s) 786
BstSCI CCNGG 4 cut(s) 777, 976, 1154, 1201
BstSFI CTRYAG 1 cut(s) 429
BstUI CGCG 3 cut(s) 729, 1121, 1151
BstV1I GCAGC 3 cut(s) 403, 500, 620
BsuI GTATCC 1 cut(s) 471
BsuRI GGCC 5 cut(s) 222, 248, 362, 798, 1154
BtgI CCRYGG 2 cut(s) 334, 1149
BtgZI GCGATG 3 cut(s) 997, 1102, 1316
BtsCI GGATG 4 cut(s) 639, 649, 983, 1267
BtsI GCAGTG 1 cut(s) 1008
BtsIMutI CAGTG 4 cut(s) 216, 303, 373, 1008
BveI ACCTGC 1 cut(s) 416
Cac8I GCNNGC 6 cut(s) 87, 135, 665, 744, 1018, 1107
CfoI GCGC 1 cut(s) 1126
Cfr10I RCCGGY 1 cut(s) 1223
Cfr13I GGNCC 4 cut(s) 247, 797, 862, 1279
Cfr42I CCGCGG 1 cut(s) 1152
CseI GACGC 3 cut(s) 1111, 1172, 1253
Csp6I GTAC 6 cut(s) 65, 91, 142, 553, 706, 736
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 7 cut(s) 60, 203, 260, 335, 516, 593, 783
CviQI GTAC 6 cut(s) 65, 91, 142, 553, 706, 736
DdeI CTNAG 2 cut(s) 540, 1347
DinI GGCGCC 1 cut(s) 1125
DpnI GATC 4 cut(s) 201, 445, 1007, 1248
DpnII GATC 4 cut(s) 199, 443, 1005, 1246
EaeI YGGCCR 2 cut(s) 360, 1152
Eam1104I CTCTTC 1 cut(s) 1053
EarI CTCTTC 1 cut(s) 1053
EciI GGCGGA 3 cut(s) 92, 152, 1070
Eco130I CCWWGG 2 cut(s) 334, 1021
Eco24I GRGCYC 2 cut(s) 825, 903
Eco31I GGTCTC 1 cut(s) 765
Eco47I GGWCC 2 cut(s) 862, 1279
Eco57I CTGAAG 5 cut(s) 506, 633, 639, 777, 959
EcoNI CCTNNNNNAGG 1 cut(s) 941
EcoRI GAATTC 1 cut(s) 907
EcoRII CCWGG 2 cut(s) 976, 1154
EcoT14I CCWWGG 2 cut(s) 334, 1021
EcoT38I GRGCYC 2 cut(s) 825, 903
EgeI GGCGCC 1 cut(s) 1125
EheI GGCGCC 1 cut(s) 1125
ErhI CCWWGG 2 cut(s) 334, 1021
Esp3I CGTCTC 1 cut(s) 196
FaeI CATG 7 cut(s) 63, 206, 263, 338, 519, 596, 786
FaqI GGGAC 2 cut(s) 143, 1304
FatI CATG 7 cut(s) 59, 202, 259, 334, 515, 592, 782
FauI CCCGC 3 cut(s) 259, 521, 656
FbaI TGATCA 2 cut(s) 199, 1005
FblI GTMKAC 3 cut(s) 207, 432, 1314
Fnu4HI GCNGC 9 cut(s) 106, 391, 394, 417, 489, 609, 1122, 1152, 1299
FokI GGATG 4 cut(s) 626, 636, 970, 1254
FriOI GRGCYC 2 cut(s) 825, 903
Fsp4HI GCNGC 9 cut(s) 106, 391, 394, 417, 489, 609, 1122, 1152, 1299
FspBI CTAG 2 cut(s) 695, 1086
GlaI GCGC 1 cut(s) 1125
GluI GCNGC 9 cut(s) 106, 391, 394, 417, 489, 609, 1122, 1152, 1299
GsaI CCCAGC 1 cut(s) 487
GsuI CTGGAG 1 cut(s) 582
HaeII RGCGCY 1 cut(s) 1127
HaeIII GGCC 5 cut(s) 222, 248, 362, 798, 1154
HapII CCGG 5 cut(s) 232, 779, 1186, 1203, 1224
HgaI GACGC 3 cut(s) 1111, 1172, 1253
HhaI GCGC 1 cut(s) 1126
Hin1I GRCGYC 4 cut(s) 1103, 1124, 1164, 1264
Hin1II CATG 7 cut(s) 63, 206, 263, 338, 519, 596, 786
Hin6I GCGC 1 cut(s) 1124
HinP1I GCGC 1 cut(s) 1124
HincII GTYRAC 4 cut(s) 22, 208, 403, 1315
HindII GTYRAC 4 cut(s) 22, 208, 403, 1315
HindIII AAGCTT 1 cut(s) 961
HinfI GANTC 8 cut(s) 32, 280, 536, 680, 718, 967, 1028, 1182
HpaI GTTAAC 1 cut(s) 403
HpaII CCGG 5 cut(s) 232, 779, 1186, 1203, 1224
HphI GGTGA 1 cut(s) 438
Hpy166II GTNNAC 6 cut(s) 22, 208, 403, 433, 553, 1315
Hpy188I TCNGA 6 cut(s) 112, 525, 685, 1033, 1212, 1283
Hpy188III TCNNGA 5 cut(s) 284, 510, 722, 904, 937
Hpy8I GTNNAC 6 cut(s) 22, 208, 403, 433, 553, 1315
Hpy99I CGWCG 7 cut(s) 116, 1105, 1139, 1142, 1166, 1287, 1325
HpyAV CCTTC 6 cut(s) 526, 653, 752, 812, 890, 934
HpyCH4III ACNGT 4 cut(s) 128, 368, 1287, 1325
HpyCH4V TGCA 6 cut(s) 164, 411, 587, 871, 983, 1001
HpyF10VI GCNNNNNNNGC 9 cut(s) 260, 368, 605, 614, 877, 1052, 1102, 1121, 1195
HpyF3I CTNAG 2 cut(s) 540, 1347
Hsp92I GRCGYC 4 cut(s) 1103, 1124, 1164, 1264
Hsp92II CATG 7 cut(s) 63, 206, 263, 338, 519, 596, 786
HspAI GCGC 1 cut(s) 1124
KasI GGCGCC 1 cut(s) 1123
Ksp22I TGATCA 2 cut(s) 199, 1005
KspAI GTTAAC 1 cut(s) 403
KspI CCGCGG 1 cut(s) 1152
Kzo9I GATC 4 cut(s) 199, 443, 1005, 1246
LguI GCTCTTC 1 cut(s) 1053
LmnI GCTCC 3 cut(s) 113, 342, 1295
Lsp1109I GCAGC 3 cut(s) 403, 500, 620
LweI GCATC 1 cut(s) 992
MaeI CTAG 2 cut(s) 695, 1086
MaeIII GTNAC 1 cut(s) 712
MalI GATC 4 cut(s) 201, 445, 1007, 1248
MbiI CCGCTC 3 cut(s) 108, 528, 1298
MboI GATC 4 cut(s) 199, 443, 1005, 1246
MboII GAAGA 4 cut(s) 322, 638, 776, 1070
MfeI CAATTG 2 cut(s) 881, 951
MhlI GDGCHC 4 cut(s) 302, 825, 903, 1146
MluCI AATT 5 cut(s) 76, 309, 881, 907, 951
Mly113I GGCGCC 1 cut(s) 1124
MlyI GAGTC 2 cut(s) 530, 961
MmeI TCCRAC 2 cut(s) 135, 1306
MseI TTAA 3 cut(s) 402, 504, 690
MspA1I CMGCKG 2 cut(s) 611, 1151
MspI CCGG 5 cut(s) 232, 779, 1186, 1203, 1224
MspR9I CCNGG 4 cut(s) 779, 978, 1156, 1203
MunI CAATTG 2 cut(s) 881, 951
MvaI CCWGG 2 cut(s) 978, 1156
MvnI CGCG 3 cut(s) 729, 1121, 1151
MwoI GCNNNNNNNGC 9 cut(s) 260, 368, 605, 614, 877, 1052, 1102, 1121, 1195
NarI GGCGCC 1 cut(s) 1124
NciI CCSGG 2 cut(s) 779, 1203
NcoI CCATGG 1 cut(s) 334
NdeII GATC 4 cut(s) 199, 443, 1005, 1246
NlaIII CATG 7 cut(s) 63, 206, 263, 338, 519, 596, 786
NlaIV GGNNCC 3 cut(s) 249, 799, 1125
NmeAIII GCCGAG 1 cut(s) 338
NspI RCATGY 1 cut(s) 786
PaqCI CACCTGC 1 cut(s) 416
PciSI GCTCTTC 1 cut(s) 1053
PfeI GAWTC 6 cut(s) 32, 280, 680, 718, 1028, 1182
PflMI CCANNNNNTGG 2 cut(s) 182, 659
PfoI TCCNGGA 1 cut(s) 1201
PkrI GCNGC 9 cut(s) 107, 392, 395, 418, 490, 610, 1123, 1153, 1300
PleI GAGTC 2 cut(s) 530, 961
PluTI GGCGCC 1 cut(s) 1127
PpsI GAGTC 2 cut(s) 530, 961
Psp6I CCWGG 2 cut(s) 976, 1154
PspFI CCCAGC 1 cut(s) 483
PspGI CCWGG 2 cut(s) 976, 1154
PspN4I GGNNCC 3 cut(s) 249, 799, 1125
PspPI GGNCC 4 cut(s) 247, 797, 862, 1279
PvuII CAGCTG 1 cut(s) 611
RsaI GTAC 6 cut(s) 66, 92, 143, 554, 707, 737
RsaNI GTAC 6 cut(s) 65, 91, 142, 553, 706, 736
SacII CCGCGG 1 cut(s) 1152
SalI GTCGAC 2 cut(s) 206, 1313
SapI GCTCTTC 1 cut(s) 1053
SaqAI TTAA 3 cut(s) 402, 504, 690
SatI GCNGC 9 cut(s) 106, 391, 394, 417, 489, 609, 1122, 1152, 1299
Sau3AI GATC 4 cut(s) 199, 443, 1005, 1246
Sau96I GGNCC 4 cut(s) 247, 797, 862, 1279
ScaI AGTACT 1 cut(s) 707
SchI GAGTC 2 cut(s) 530, 961
ScrFI CCNGG 4 cut(s) 779, 978, 1156, 1203
SduI GDGCHC 4 cut(s) 302, 825, 903, 1146
SfaNI GCATC 1 cut(s) 992
SfcI CTRYAG 1 cut(s) 429
SfoI GGCGCC 1 cut(s) 1125
Sfr303I CCGCGG 1 cut(s) 1152
SgrBI CCGCGG 1 cut(s) 1152
SinI GGWCC 2 cut(s) 862, 1279
SmlI CTYRAG 5 cut(s) 284, 295, 494, 824, 902
SmoI CTYRAG 5 cut(s) 284, 295, 494, 824, 902
Sse9I AATT 5 cut(s) 76, 309, 881, 907, 951
SspDI GGCGCC 1 cut(s) 1123
SspI AATATT 1 cut(s) 327
SspMI CTAG 2 cut(s) 695, 1086
StyD4I CCNGG 4 cut(s) 777, 976, 1154, 1201
StyI CCWWGG 2 cut(s) 334, 1021
TaaI ACNGT 4 cut(s) 128, 368, 1287, 1325
TaqI TCGA 5 cut(s) 207, 509, 1161, 1314, 1320
TasI AATT 5 cut(s) 76, 309, 881, 907, 951
TatI WGTACW 2 cut(s) 552, 705
TauI GCSGC 6 cut(s) 108, 393, 396, 1124, 1154, 1301
TfiI GAWTC 6 cut(s) 32, 280, 680, 718, 1028, 1182
Tru1I TTAA 3 cut(s) 402, 504, 690
Tru9I TTAA 3 cut(s) 402, 504, 690
TscAI CASTG 4 cut(s) 223, 310, 373, 1008
TseI GCWGC 3 cut(s) 416, 488, 608
TspDTI ATGAA 3 cut(s) 30, 45, 638
TspGWI ACGGA 2 cut(s) 129, 1308
TspRI CASTG 4 cut(s) 223, 310, 373, 1008
Van91I CCANNNNNTGG 2 cut(s) 182, 659
VpaK11BI GGWCC 2 cut(s) 862, 1279
XagI CCTNNNNNAGG 1 cut(s) 941
XapI RAATTY 1 cut(s) 907
XceI RCATGY 1 cut(s) 786
XcmI CCANNNNNNNNNTGG 2 cut(s) 57, 82
XmiI GTMKAC 3 cut(s) 207, 432, 1314
XspI CTAG 2 cut(s) 695, 1086
ZrmI AGTACT 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.