Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009030

Physical Location & Seq

Genomic Coordinates Reverse (-)

41376311 .. 41378912

Gene Structure 2602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1296000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCTGGCAGTAATGAAGTCAACGTCAATGAATCCAAGAAGGTTGTTCCGCTCAACACATGGGTACTAATCTCCAATTTCAAGCTGGCTTACAACCTCCTCCGCCGTGCCGATGGAACATTCAACCGCGAGCTGGCGGAGTTCCTCGACCGGAAAGTCCCCGCCAACACAGTTCCGGTTGACGGGGTTTTCTCGTTTGATCACGTCGACAGAGCCACCGGCCTCCTCAACCGTGTTTACCAATTTGCCCCCCAAAACGAGTCTCAATGGGGTATCGTGGATCTTGAGCATCCCTTGAGCACCACCAAGGTCGTCCCGGTCATAATCTTCTTCCACGGTGGAAGCTTCACTCATTCCTCCGCCAACAGCGCCATCTACGACACTTTCTGCCGCCGCCTTGTCAACACTTGCAAGGCGGTTGTAGTCTCCGTAAACTACCGCCGTTCGCCAGAACATCGGTATCCTTGTGCTTATGAGGACGGATGGGCGGCTCTCAAGTGGGTGAAATCGAGAAAGTGGCTGCAGAGCGGGAAGGGGAAGGACTTGAAAGTTCATGTCTACTTAGCTGGAGACAGCTCCGGCGGCAACATTGCTCACCACGTCGCGGTAAAGGCGGCAGAAGCGGAGGTTGAGGTGCTCGGAAACATCCTTCTGCACCCGATGTTTGCAGGGCAAAAGAGAACAGAATCAGAGAAGAGATTGGACGGGAAGTACTTCGTAACGATACAAGACCGCGATTGGTACTGGCGGGCATTTCTCCCCGAAGGCGAAGATAGAGATCATCCTGCGTGTCACGTTTTCGGCCCGAGGGACAAGAGCCTCGAGGGCTTGAAATTTCCCAAGAGTCTCGTTGTTGTGGCGGGCTTCGATCTTATGCAAGATTGGCAATTGGCCTATGTGGAAGGGCTCAAAAATGCAGGGCAGGACGTGAAGCTTCTGTTCTTAAAGCAGGCGACGATCGGGTTCTACTTCTTGCCGAACAACGAGCATTTCTACTGCCTCATGGAGGAGATGAAGACCTTCGTGAATCCTGACTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009311 GO:0009312 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009755 GO:0009791 GO:0009892 GO:0009908 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010154 GO:0010325 GO:0010331 GO:0010468 GO:0010476 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0016051 GO:0016787 GO:0019222 GO:0019840 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0031406 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044238 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048518 GO:0048519 GO:0048522 GO:0048530 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0080154 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901576 GO:1901700 GO:1901701 GO:1905392 GO:1905516 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

347

Amino Acids

39.26

Weight (kDa)

7.67

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	94 - 211	2.6e-12	BD-FAE
COesterase	PF00135	100 - 169	5.9e-06	Carboxylesterase family
Abhydrolase_3	PF07859	108 - 323	3.9e-62	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63010
fragaria_vesca	FvH4_2g24370 FvH4_2g24370 FvH4_3g11720
malus_domestica	MD03G1273300.v1.1 MD11G1296000.v1.1
prunus_persica	Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1
pyrus_communis	pycom03g21780 pycom11g26050
rosa_chinensis	RchiOBHm_Chr6g0292241
rosa_laevigata	RLG00000012050
rosa_multiflora	Rmu_sc0002993.1_g000009
rosa_roxburghii	Rroxscaffold_7G00175310
rosa_rugosa	Rorug06G0224800
rosa_samantha	Rh6AG337800 Rh6BG345100 Rh6CG352200 Rh6DG338100
rosa_wichuraiana	Rw6G029420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
AbsI	CCTCGAGG	1 cut(s)	821
AccBSI	CCGCTC	2 cut(s)	52, 528
AccI	GTMKAC	2 cut(s)	207, 558
AccII	CGCG	3 cut(s)	129, 605, 735
AclWI	GGATC	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	833
AfaI	GTAC	3 cut(s)	66, 713, 743
AfiI	CCNNNNNNNGG	4 cut(s)	133, 182, 604, 1006
AgsI	TTSAA	4 cut(s)	82, 124, 547, 832
AjiI	CACGTC	3 cut(s)	205, 601, 928
AluBI	AGCT	6 cut(s)	85, 133, 345, 566, 576, 934
AluI	AGCT	6 cut(s)	85, 133, 345, 566, 576, 934
Alw21I	GWGCWC	2 cut(s)	302, 639
Alw26I	GTCTC	4 cut(s)	267, 430, 564, 851
AlwI	GGATC	1 cut(s)	288
Ama87I	CYCGRG	2 cut(s)	805, 821
AoxI	GGCC	3 cut(s)	220, 802, 891
ApeKI	GCWGC	1 cut(s)	520
ApoI	RAATTY	1 cut(s)	833
Asp700I	GAANNNNTTC	2 cut(s)	713, 1019
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	803
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	2 cut(s)	514, 587
AvaI	CYCGRG	2 cut(s)	805, 821
BaeI	ACNNNNGTAYC	2 cut(s)	443, 476
BanII	GRGCYC	1 cut(s)	909
BbsI	GAAGAC	1 cut(s)	1022
Bbv12I	GWGCWC	2 cut(s)	302, 639
BbvI	GCAGC	1 cut(s)	507
BccI	CCATC	3 cut(s)	107, 380, 477
BceAI	ACGGC	2 cut(s)	90, 426
BciVI	GTATCC	1 cut(s)	471
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	4 cut(s)	267, 430, 564, 851
BfmI	CTRYAG	1 cut(s)	521
BfoI	RGCGCY	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	471
BglI	GCCNNNNNGGC	1 cut(s)	825
BisI	GCNGC	6 cut(s)	391, 394, 489, 521, 583, 615
BlsI	GCNGC	6 cut(s)	392, 395, 490, 522, 584, 616
BmcAI	AGTACT	1 cut(s)	713
Bme1390I	CCNGG	1 cut(s)	317
BmeT110I	CYCGRG	2 cut(s)	805, 821
BmgBI	CACGTC	3 cut(s)	205, 601, 928
BmgT120I	GGNCC	1 cut(s)	803
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	1022
BpmI	CTGGAG	1 cut(s)	588
BpuEI	CTTGAG	3 cut(s)	305, 316, 479
BpuMI	CCSGG	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	777
BsaJI	CCNNGG	3 cut(s)	306, 334, 806
BsaWI	WCCGGW	2 cut(s)	150, 175
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 182, 604, 1006
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	749
Bse3DI	GCAATG	1 cut(s)	588
Bse8I	GATNNNNATC	1 cut(s)	777
BseDI	CCNNGG	3 cut(s)	306, 334, 806
BseGI	GGATG	4 cut(s)	289, 488, 645, 781
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	4 cut(s)	133, 182, 604, 1006
BseMI	GCAATG	1 cut(s)	588
BseNI	ACTGG	1 cut(s)	749
BseRI	GAGGAG	3 cut(s)	89, 215, 1022
BseXI	GCAGC	1 cut(s)	507
BsgI	GTGCAG	1 cut(s)	638
Bsh1236I	CGCG	3 cut(s)	129, 605, 735
Bsh1285I	CGRYCG	2 cut(s)	151, 960
BshFI	GGCC	3 cut(s)	222, 804, 893
BsiEI	CGRYCG	2 cut(s)	151, 960
BsiHKAI	GWGCWC	2 cut(s)	302, 639
BsiHKCI	CYCGRG	2 cut(s)	805, 821
BsiSI	CCGG	5 cut(s)	151, 176, 219, 317, 579
BslFI	GGGAC	3 cut(s)	143, 299, 824
BslI	CCNNNNNNNGG	4 cut(s)	133, 182, 604, 1006
BsmAI	GTCTC	4 cut(s)	267, 430, 564, 851
BsmFI	GGGAC	3 cut(s)	143, 299, 824
BsnI	GGCC	3 cut(s)	222, 804, 893
BsoBI	CYCGRG	2 cut(s)	805, 821
Bsp1286I	GDGCHC	3 cut(s)	302, 639, 909
Bsp143I	GATC	5 cut(s)	199, 280, 778, 868, 957
BspANI	GGCC	3 cut(s)	222, 804, 893
BspFNI	CGCG	3 cut(s)	129, 605, 735
BspMAI	CTGCAG	1 cut(s)	525
BspPI	GGATC	1 cut(s)	288
BsrBI	CCGCTC	2 cut(s)	52, 528
BsrDI	GCAATG	1 cut(s)	588
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	749
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	306, 334, 806
BssMI	GATC	5 cut(s)	199, 280, 778, 868, 957
BssT1I	CCWWGG	1 cut(s)	306
Bst4CI	ACNGT	4 cut(s)	172, 233, 338, 1037
Bst6I	CTCTTC	1 cut(s)	689
BstC8I	GCNNGC	7 cut(s)	7, 87, 131, 135, 750, 862, 951
BstDEI	CTNAG	1 cut(s)	562
BstDSI	CCRYGG	1 cut(s)	334
BstENI	CCTNNNNNAGG	1 cut(s)	1004
BstF5I	GGATG	4 cut(s)	289, 488, 645, 781
BstFNI	CGCG	3 cut(s)	129, 605, 735
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	5 cut(s)	202, 283, 781, 871, 960
BstMAI	GTCTC	4 cut(s)	267, 430, 564, 851
BstMBI	GATC	5 cut(s)	199, 280, 778, 868, 957
BstMCI	CGRYCG	2 cut(s)	151, 960
BstMWI	GCNNNNNNNGC	6 cut(s)	368, 582, 611, 620, 825, 883
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	521
BstUI	CGCG	3 cut(s)	129, 605, 735
BstV1I	GCAGC	1 cut(s)	507
BstV2I	GAAGAC	1 cut(s)	1022
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuI	GTATCC	1 cut(s)	471
BsuRI	GGCC	3 cut(s)	222, 804, 893
BtgI	CCRYGG	1 cut(s)	334
BtrI	CACGTC	3 cut(s)	205, 601, 928
BtsCI	GGATG	4 cut(s)	289, 488, 645, 781
Cac8I	GCNNGC	7 cut(s)	7, 87, 131, 135, 750, 862, 951
CfoI	GCGC	1 cut(s)	371
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	803
Csp6I	GTAC	3 cut(s)	65, 712, 742
CviAII	CATG	3 cut(s)	60, 554, 1003
CviQI	GTAC	3 cut(s)	65, 712, 742
DdeI	CTNAG	1 cut(s)	562
DpnI	GATC	5 cut(s)	201, 282, 780, 870, 959
DpnII	GATC	5 cut(s)	199, 280, 778, 868, 957
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
Eam1104I	CTCTTC	1 cut(s)	689
EarI	CTCTTC	1 cut(s)	689
EciI	GGCGGA	3 cut(s)	92, 152, 349
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	909
Eco88I	CYCGRG	2 cut(s)	805, 821
EcoNI	CCTNNNNNAGG	1 cut(s)	1004
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	909
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	3 cut(s)	63, 557, 1006
FaiI	YATR	7 cut(s)	61, 323, 474, 555, 875, 897, 1004
FaqI	GGGAC	3 cut(s)	143, 299, 824
FatI	CATG	3 cut(s)	59, 553, 1002
FauI	CCCGC	4 cut(s)	169, 521, 741, 853
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	2 cut(s)	207, 558
Fnu4HI	GCNGC	6 cut(s)	391, 394, 489, 521, 583, 615
FokI	GGATG	4 cut(s)	276, 495, 632, 768
FriOI	GRGCYC	1 cut(s)	909
Fsp4HI	GCNGC	6 cut(s)	391, 394, 489, 521, 583, 615
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	6 cut(s)	391, 394, 489, 521, 583, 615
GsuI	CTGGAG	1 cut(s)	588
HaeII	RGCGCY	1 cut(s)	372
HaeIII	GGCC	3 cut(s)	222, 804, 893
HapII	CCGG	5 cut(s)	151, 176, 219, 317, 579
HhaI	GCGC	1 cut(s)	371
Hin1II	CATG	3 cut(s)	63, 557, 1006
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HincII	GTYRAC	4 cut(s)	22, 181, 208, 403
HindII	GTYRAC	4 cut(s)	22, 181, 208, 403
HindIII	AAGCTT	2 cut(s)	343, 932
HinfI	GANTC	5 cut(s)	32, 260, 686, 844, 1027
HpaII	CCGG	5 cut(s)	151, 176, 219, 317, 579
HphI	GGTGA	2 cut(s)	514, 587
Hpy166II	GTNNAC	7 cut(s)	22, 181, 208, 238, 403, 433, 559
Hpy188I	TCNGA	2 cut(s)	641, 691
Hpy188III	TCNNGA	4 cut(s)	284, 510, 1024, 1031
Hpy8I	GTNNAC	7 cut(s)	22, 181, 208, 238, 403, 433, 559
Hpy99I	CGWCG	3 cut(s)	209, 605, 958
HpyAV	CCTTC	7 cut(s)	34, 526, 532, 659, 758, 896, 1030
HpyCH4III	ACNGT	4 cut(s)	172, 233, 338, 1037
HpyCH4IV	ACGT	5 cut(s)	24, 204, 600, 795, 927
HpyCH4V	TGCA	6 cut(s)	411, 523, 655, 668, 877, 917
HpyF10VI	GCNNNNNNNGC	6 cut(s)	368, 582, 611, 620, 825, 883
HpyF3I	CTNAG	1 cut(s)	562
HpySE526I	ACGT	5 cut(s)	24, 204, 600, 795, 927
Hsp92II	CATG	3 cut(s)	63, 557, 1006
HspAI	GCGC	1 cut(s)	369
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	199, 280, 778, 868, 957
LmnI	GCTCC	1 cut(s)	581
Lsp1109I	GCAGC	1 cut(s)	507
LweI	GCATC	1 cut(s)	298
MaeII	ACGT	5 cut(s)	24, 204, 600, 795, 927
MaeIII	GTNAC	2 cut(s)	718, 791
MalI	GATC	5 cut(s)	201, 282, 780, 870, 959
MbiI	CCGCTC	2 cut(s)	52, 528
MboI	GATC	5 cut(s)	199, 280, 778, 868, 957
MboII	GAAGA	5 cut(s)	319, 322, 706, 782, 1027
MfeI	CAATTG	1 cut(s)	887
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	3 cut(s)	302, 639, 909
MluCI	AATT	4 cut(s)	76, 242, 833, 887
MlyI	GAGTC	2 cut(s)	269, 853
MroXI	GAANNNNTTC	2 cut(s)	713, 1019
MseI	TTAA	2 cut(s)	944, 1039
MspI	CCGG	5 cut(s)	151, 176, 219, 317, 579
MspR9I	CCNGG	1 cut(s)	317
MunI	CAATTG	1 cut(s)	887
MvnI	CGCG	3 cut(s)	129, 605, 735
MwoI	GCNNNNNNNGC	6 cut(s)	368, 582, 611, 620, 825, 883
NciI	CCSGG	1 cut(s)	317
NdeII	GATC	5 cut(s)	199, 280, 778, 868, 957
NlaIII	CATG	3 cut(s)	63, 557, 1006
NmuCI	GTSAC	1 cut(s)	791
PaeR7I	CTCGAG	1 cut(s)	821
PdmI	GAANNNNTTC	2 cut(s)	713, 1019
PfeI	GAWTC	3 cut(s)	32, 686, 1027
PkrI	GCNGC	6 cut(s)	392, 395, 490, 522, 584, 616
Ple19I	CGATCG	1 cut(s)	960
PleI	GAGTC	2 cut(s)	268, 852
PpsI	GAGTC	2 cut(s)	268, 852
PspPI	GGNCC	1 cut(s)	803
PspXI	VCTCGAGB	1 cut(s)	821
PstI	CTGCAG	1 cut(s)	525
PsuI	RGATCY	1 cut(s)	280
PvuI	CGATCG	1 cut(s)	960
RsaI	GTAC	3 cut(s)	66, 713, 743
RsaNI	GTAC	3 cut(s)	65, 712, 742
SalI	GTCGAC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	944, 1039
SatI	GCNGC	6 cut(s)	391, 394, 489, 521, 583, 615
Sau3AI	GATC	5 cut(s)	199, 280, 778, 868, 957
Sau96I	GGNCC	1 cut(s)	803
ScaI	AGTACT	1 cut(s)	713
SchI	GAGTC	2 cut(s)	269, 853
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	3 cut(s)	302, 639, 909
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	521
Sfr274I	CTCGAG	1 cut(s)	821
SlaI	CTCGAG	1 cut(s)	821
SmlI	CTYRAG	4 cut(s)	284, 295, 494, 821
SmoI	CTYRAG	4 cut(s)	284, 295, 494, 821
Sse9I	AATT	4 cut(s)	76, 242, 833, 887
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	4 cut(s)	172, 233, 338, 1037
TaiI	ACGT	5 cut(s)	27, 207, 603, 798, 930
TaqI	TCGA	5 cut(s)	147, 207, 509, 822, 867
TasI	AATT	4 cut(s)	76, 242, 833, 887
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	5 cut(s)	393, 396, 491, 585, 617
TfiI	GAWTC	3 cut(s)	32, 686, 1027
Tru1I	TTAA	2 cut(s)	944, 1039
Tru9I	TTAA	2 cut(s)	944, 1039
TseFI	GTSAC	1 cut(s)	791
TseI	GCWGC	1 cut(s)	520
Tsp45I	GTSAC	1 cut(s)	791
TspDTI	ATGAA	4 cut(s)	30, 45, 542, 1028
TspGWI	ACGGA	2 cut(s)	418, 495
XagI	CCTNNNNNAGG	1 cut(s)	1004
XapI	RAATTY	1 cut(s)	833
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XhoI	CTCGAG	1 cut(s)	821
XmiI	GTMKAC	2 cut(s)	207, 558
XmnI	GAANNNNTTC	2 cut(s)	713, 1019
ZrmI	AGTACT	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.