Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009030

Physical Location & Seq

Genomic Coordinates Reverse (-)

6915614 .. 6918313

Gene Structure 2700 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGACTGGTAGTAACGAAGACAACCTCAATGAATCCAAGAGAGTTGTTCCACTCAATACATGGGTACTCATCTCCAATTTCAAGCTTTCCTACAATCTCCTCCGCCGCTCTGACGGAACATTCAACCGTGAGCTGGCGGAGTTCCTTGACCGCAAAGTCCCTGCAAACACCATCCCAGTTGACGGTGTCTTCTCCTTTGATCATGTCGACAGAAGCACCGGCCTACTCAACCGGGTTTACCAAATGGCCCCGGCAAACTATGCTCAATGGGACATTGCGAATCTTGAGAAACCCTTGAGTACCACTGAGATTGTGCCTGTCATAATCTTCTTCCATGGTGGAAGCTTCACTCACTCCTCGGCCAACAGTGCTATCTACGACACTTTCTGCCGCCGCCTTGTGAAAACCTGCAAGGCTGCTGCGGTGTCTGTAGACTACCGCAGATCACCTGAACATCGCTATCCTTGTGCTTATGAAGATGGCTGTGCAGCTCTCAAGTGGGTTAAGTCAAGAACATGGCTGCAGAGTGGGAAGGATTCTAAGGTTTATGTCTACTTGGCTGGAGATAGTTCTGGTGGCAACATTGTACACCATGTTGCTGTGAGGGCAGCTGAGGCTGAAGTTGAGGTTTTGGGGAACATTCTTGTTCATCCAATGTTTGGTGGCCAAATGAGGACTGAATCTGAGGTTAAACTAGATGGGAAGTACTTTGTAACTGTTCAAGACCGTGATTGGTACTGGCGAGCATTTCTACCTGAAGGAGAAGATAGAGACCACCCTGCATGTAACACATTTGGCCCCAGAGATAAGGGGATTCAAGGGCTCAAGTTCCCCAAAAGTCTTGTTGTTGTGGCTGGTTTGGACCTTATGCAAGATTGGCAATTGGCTTATGTTGAAGGGCTCAGGATTTCAGGGCAGGAGGTGAAGCTCGTTTTCCTCAAGGAGGCGACAATTGGGTTCTACTTCCTGCCTAACAATAAGCATTTCTGTCGTCTAATGGAGGAGATAAGCAACTTCGTCAAACCTGACTGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009311 GO:0009312 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009755 GO:0009791 GO:0009892 GO:0009908 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010154 GO:0010325 GO:0010331 GO:0010468 GO:0010476 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0016051 GO:0016787 GO:0019222 GO:0019840 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0031406 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044238 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048518 GO:0048519 GO:0048522 GO:0048530 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0080154 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901576 GO:1901700 GO:1901701 GO:1905392 GO:1905516 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

346

Amino Acids

39.04

Weight (kDa)

6.76

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	98 - 209	3.5e-11	BD-FAE
Abhydrolase_3	PF07859	108 - 321	3.5e-59	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63010
fragaria_vesca	FvH4_2g24370 FvH4_2g24370 FvH4_3g11720
malus_domestica	MD03G1273300.v1.1 MD11G1296000.v1.1
prunus_persica	Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1 Prupe.8G249800_v2.0.a1
pyrus_communis	pycom03g21780 pycom11g26050
rosa_chinensis	RchiOBHm_Chr6g0292241
rosa_laevigata	RLG00000012050
rosa_multiflora	Rmu_sc0002993.1_g000009
rosa_roxburghii	Rroxscaffold_7G00175310
rosa_rugosa	Rorug06G0224800
rosa_samantha	Rh6AG337800 Rh6BG345100 Rh6CG352200 Rh6DG338100
rosa_wichuraiana	Rw6G029420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
Acc36I	ACCTGC	1 cut(s)	416
AccB7I	CCANNNNNTGG	1 cut(s)	659
AccBSI	CCGCTC	1 cut(s)	108
AccI	GTMKAC	3 cut(s)	207, 432, 552
AciI	CCGC	8 cut(s)	103, 106, 137, 151, 391, 394, 422, 439
AcoI	YGGCCR	2 cut(s)	360, 664
AcuI	CTGAAG	2 cut(s)	639, 777
AfaI	GTAC	5 cut(s)	66, 301, 588, 707, 737
AfiI	CCNNNNNNNGG	4 cut(s)	133, 182, 659, 943
AgsI	TTSAA	5 cut(s)	82, 124, 722, 818, 896
AluBI	AGCT	6 cut(s)	85, 133, 345, 491, 611, 928
AluI	AGCT	6 cut(s)	85, 133, 345, 491, 611, 928
Alw26I	GTCTC	1 cut(s)	765
AoxI	GGCC	5 cut(s)	220, 246, 360, 664, 796
ApeKI	GCWGC	5 cut(s)	416, 419, 488, 520, 608
AspS9I	GGNCC	3 cut(s)	247, 797, 862
AsuC2I	CCSGG	2 cut(s)	233, 251
AsuHPI	GGTGA	2 cut(s)	438, 934
AvaII	GGWCC	1 cut(s)	862
BalI	TGGCCA	1 cut(s)	666
BanII	GRGCYC	2 cut(s)	825, 903
BbsI	GAAGAC	2 cut(s)	24, 181
BbvCI	CCTCAGC	1 cut(s)	612
BbvI	GCAGC	5 cut(s)	403, 406, 500, 507, 620
BccI	CCATC	3 cut(s)	179, 473, 692
BcgI	CGANNNNNNTGC	2 cut(s)	971, 1005
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	2 cut(s)	233, 251
BcoDI	GTCTC	1 cut(s)	765
BfaI	CTAG	1 cut(s)	695
BfmI	CTRYAG	2 cut(s)	429, 521
BfuAI	ACCTGC	1 cut(s)	416
BisI	GCNGC	8 cut(s)	106, 391, 394, 417, 420, 489, 521, 609
BlsI	GCNGC	8 cut(s)	107, 392, 395, 418, 421, 490, 522, 610
BmcAI	AGTACT	1 cut(s)	707
Bme1390I	CCNGG	2 cut(s)	233, 251
Bme18I	GGWCC	1 cut(s)	862
BmgT120I	GGNCC	3 cut(s)	247, 797, 862
BmiI	GGNNCC	2 cut(s)	249, 799
BmrFI	CCNGG	2 cut(s)	233, 251
BmrI	ACTGGG	1 cut(s)	170
BmuI	ACTGGG	1 cut(s)	170
BpiI	GAAGAC	2 cut(s)	24, 181
BpmI	CTGGAG	1 cut(s)	582
Bpu10I	CCTNAGC	2 cut(s)	612, 902
BpuEI	CTTGAG	5 cut(s)	305, 316, 479, 809, 923
BpuMI	CCSGG	2 cut(s)	233, 251
BsaI	GGTCTC	1 cut(s)	765
BsaJI	CCNNGG	3 cut(s)	249, 334, 357
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 182, 659, 943
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	3 cut(s)	10, 176, 743
Bse3DI	GCAATG	1 cut(s)	273
BseDI	CCNNGG	3 cut(s)	249, 334, 357
BseGI	GGATG	2 cut(s)	171, 649
BseLI	CCNNNNNNNGG	4 cut(s)	133, 182, 659, 943
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	4 cut(s)	297, 603, 675, 916
BseNI	ACTGG	3 cut(s)	10, 176, 743
BseRI	GAGGAG	3 cut(s)	89, 346, 1016
BseXI	GCAGC	5 cut(s)	403, 406, 500, 507, 620
BsgI	GTGCAG	1 cut(s)	507
BshFI	GGCC	5 cut(s)	222, 248, 362, 666, 798
BsiSI	CCGG	3 cut(s)	219, 232, 251
BslFI	GGGAC	2 cut(s)	143, 284
BslI	CCNNNNNNNGG	4 cut(s)	133, 182, 659, 943
BsmAI	GTCTC	1 cut(s)	765
BsmFI	GGGAC	2 cut(s)	143, 284
BsnI	GGCC	5 cut(s)	222, 248, 362, 666, 798
Bso31I	GGTCTC	1 cut(s)	765
Bsp1286I	GDGCHC	2 cut(s)	825, 903
Bsp1407I	TGTACA	1 cut(s)	586
Bsp143I	GATC	2 cut(s)	199, 443
Bsp19I	CCATGG	1 cut(s)	334
BspACI	CCGC	8 cut(s)	103, 106, 137, 151, 391, 394, 422, 439
BspANI	GGCC	5 cut(s)	222, 248, 362, 666, 798
BspCNI	CTCAG	4 cut(s)	298, 604, 676, 915
BspLI	GGNNCC	2 cut(s)	249, 799
BspMAI	CTGCAG	1 cut(s)	525
BspMI	ACCTGC	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	765
BsrBI	CCGCTC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	273
BsrFI	RCCGGY	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	586
BsrI	ACTGG	3 cut(s)	10, 176, 743
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	249, 334, 357
BssMI	GATC	2 cut(s)	199, 443
BssT1I	CCWWGG	1 cut(s)	334
Bst4CI	ACNGT	5 cut(s)	128, 185, 368, 718, 728
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstAUI	TGTACA	1 cut(s)	586
BstC8I	GCNNGC	2 cut(s)	135, 744
BstDEI	CTNAG	5 cut(s)	306, 540, 612, 684, 902
BstDSI	CCRYGG	1 cut(s)	334
BstENI	CCTNNNNNAGG	1 cut(s)	941
BstF5I	GGATG	2 cut(s)	171, 649
BstKTI	GATC	2 cut(s)	202, 446
BstMAI	GTCTC	1 cut(s)	765
BstMBI	GATC	2 cut(s)	199, 443
BstMWI	GCNNNNNNNGC	5 cut(s)	260, 368, 605, 614, 877
BstNSI	RCATGY	1 cut(s)	786
BstSCI	CCNGG	2 cut(s)	231, 249
BstSFI	CTRYAG	2 cut(s)	429, 521
BstV1I	GCAGC	5 cut(s)	403, 406, 500, 507, 620
BstV2I	GAAGAC	2 cut(s)	24, 181
BsuRI	GGCC	5 cut(s)	222, 248, 362, 666, 798
BtgI	CCRYGG	1 cut(s)	334
BtgZI	GCGATG	1 cut(s)	440
BtsCI	GGATG	2 cut(s)	171, 649
BtsIMutI	CAGTG	2 cut(s)	303, 373
BveI	ACCTGC	1 cut(s)	416
Cac8I	GCNNGC	2 cut(s)	135, 744
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	3 cut(s)	247, 797, 862
Csp6I	GTAC	5 cut(s)	65, 300, 587, 706, 736
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	6 cut(s)	60, 203, 335, 516, 593, 783
CviQI	GTAC	5 cut(s)	65, 300, 587, 706, 736
DdeI	CTNAG	5 cut(s)	306, 540, 612, 684, 902
DpnI	GATC	2 cut(s)	201, 445
DpnII	GATC	2 cut(s)	199, 443
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	2 cut(s)	360, 664
EciI	GGCGGA	2 cut(s)	92, 152
Eco130I	CCWWGG	1 cut(s)	334
Eco24I	GRGCYC	2 cut(s)	825, 903
Eco31I	GGTCTC	1 cut(s)	765
Eco47I	GGWCC	1 cut(s)	862
Eco57I	CTGAAG	2 cut(s)	639, 777
EcoNI	CCTNNNNNAGG	1 cut(s)	941
EcoT14I	CCWWGG	1 cut(s)	334
EcoT38I	GRGCYC	2 cut(s)	825, 903
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	6 cut(s)	63, 206, 338, 519, 596, 786
FaqI	GGGAC	2 cut(s)	143, 284
FatI	CATG	6 cut(s)	59, 202, 334, 515, 592, 782
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	3 cut(s)	207, 432, 552
Fnu4HI	GCNGC	8 cut(s)	106, 391, 394, 417, 420, 489, 521, 609
FokI	GGATG	2 cut(s)	158, 636
FriOI	GRGCYC	2 cut(s)	825, 903
Fsp4HI	GCNGC	8 cut(s)	106, 391, 394, 417, 420, 489, 521, 609
FspBI	CTAG	1 cut(s)	695
GluI	GCNGC	8 cut(s)	106, 391, 394, 417, 420, 489, 521, 609
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	5 cut(s)	222, 248, 362, 666, 798
HapII	CCGG	3 cut(s)	219, 232, 251
Hin1II	CATG	6 cut(s)	63, 206, 338, 519, 596, 786
HincII	GTYRAC	2 cut(s)	181, 208
HindII	GTYRAC	2 cut(s)	181, 208
HindIII	AAGCTT	2 cut(s)	83, 343
HinfI	GANTC	5 cut(s)	32, 280, 536, 680, 814
HpaII	CCGG	3 cut(s)	219, 232, 251
HphI	GGTGA	2 cut(s)	438, 934
Hpy166II	GTNNAC	6 cut(s)	181, 208, 238, 433, 553, 589
Hpy188I	TCNGA	2 cut(s)	112, 685
Hpy188III	TCNNGA	4 cut(s)	284, 510, 722, 904
Hpy8I	GTNNAC	6 cut(s)	181, 208, 238, 433, 553, 589
HpyAV	CCTTC	3 cut(s)	526, 752, 890
HpyCH4III	ACNGT	5 cut(s)	128, 185, 368, 718, 728
HpyCH4V	TGCA	6 cut(s)	164, 411, 488, 523, 782, 871
HpyF10VI	GCNNNNNNNGC	5 cut(s)	260, 368, 605, 614, 877
HpyF3I	CTNAG	5 cut(s)	306, 540, 612, 684, 902
Hsp92II	CATG	6 cut(s)	63, 206, 338, 519, 596, 786
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	199, 443
Lsp1109I	GCAGC	5 cut(s)	403, 406, 500, 507, 620
MaeI	CTAG	1 cut(s)	695
MaeIII	GTNAC	3 cut(s)	11, 712, 785
MalI	GATC	2 cut(s)	201, 445
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	2 cut(s)	199, 443
MboII	GAAGA	6 cut(s)	29, 181, 319, 322, 488, 776
MfeI	CAATTG	2 cut(s)	881, 951
MhlI	GDGCHC	2 cut(s)	825, 903
MlsI	TGGCCA	1 cut(s)	666
MluCI	AATT	3 cut(s)	76, 881, 951
MluNI	TGGCCA	1 cut(s)	666
Mox20I	TGGCCA	1 cut(s)	666
MscI	TGGCCA	1 cut(s)	666
MseI	TTAA	3 cut(s)	504, 690, 1036
Msp20I	TGGCCA	1 cut(s)	666
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	3 cut(s)	219, 232, 251
MspR9I	CCNGG	2 cut(s)	233, 251
MunI	CAATTG	2 cut(s)	881, 951
MwoI	GCNNNNNNNGC	5 cut(s)	260, 368, 605, 614, 877
NciI	CCSGG	2 cut(s)	233, 251
NcoI	CCATGG	1 cut(s)	334
NdeII	GATC	2 cut(s)	199, 443
NlaIII	CATG	6 cut(s)	63, 206, 338, 519, 596, 786
NlaIV	GGNNCC	2 cut(s)	249, 799
NmeAIII	GCCGAG	1 cut(s)	338
NspI	RCATGY	1 cut(s)	786
PfeI	GAWTC	5 cut(s)	32, 280, 536, 680, 814
PflFI	GACNNNGTC	1 cut(s)	185
PflMI	CCANNNNNTGG	1 cut(s)	659
PkrI	GCNGC	8 cut(s)	107, 392, 395, 418, 421, 490, 522, 610
PspN4I	GGNNCC	2 cut(s)	249, 799
PspPI	GGNCC	3 cut(s)	247, 797, 862
PstI	CTGCAG	1 cut(s)	525
PsyI	GACNNNGTC	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	5 cut(s)	66, 301, 588, 707, 737
RsaNI	GTAC	5 cut(s)	65, 300, 587, 706, 736
SalI	GTCGAC	1 cut(s)	206
SaqAI	TTAA	3 cut(s)	504, 690, 1036
SatI	GCNGC	8 cut(s)	106, 391, 394, 417, 420, 489, 521, 609
Sau3AI	GATC	2 cut(s)	199, 443
Sau96I	GGNCC	3 cut(s)	247, 797, 862
ScaI	AGTACT	1 cut(s)	707
ScrFI	CCNGG	2 cut(s)	233, 251
SduI	GDGCHC	2 cut(s)	825, 903
SfcI	CTRYAG	2 cut(s)	429, 521
SinI	GGWCC	1 cut(s)	862
SmlI	CTYRAG	5 cut(s)	284, 295, 494, 824, 938
SmoI	CTYRAG	5 cut(s)	284, 295, 494, 824, 938
Sse9I	AATT	3 cut(s)	76, 881, 951
SsiI	CCGC	8 cut(s)	103, 106, 137, 151, 391, 394, 422, 439
SspMI	CTAG	1 cut(s)	695
StyD4I	CCNGG	2 cut(s)	231, 249
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	5 cut(s)	128, 185, 368, 718, 728
TaqI	TCGA	1 cut(s)	207
TasI	AATT	3 cut(s)	76, 881, 951
TatI	WGTACW	2 cut(s)	586, 705
TauI	GCSGC	3 cut(s)	108, 393, 396
TfiI	GAWTC	5 cut(s)	32, 280, 536, 680, 814
Tru1I	TTAA	3 cut(s)	504, 690, 1036
Tru9I	TTAA	3 cut(s)	504, 690, 1036
TscAI	CASTG	2 cut(s)	310, 373
TseI	GCWGC	5 cut(s)	416, 419, 488, 520, 608
TspDTI	ATGAA	3 cut(s)	45, 489, 638
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	2 cut(s)	310, 373
Tth111I	GACNNNGTC	1 cut(s)	185
Van91I	CCANNNNNTGG	1 cut(s)	659
VpaK11BI	GGWCC	1 cut(s)	862
XagI	CCTNNNNNAGG	1 cut(s)	941
XceI	RCATGY	1 cut(s)	786
XcmI	CCANNNNNNNNNTGG	1 cut(s)	57
XmiI	GTMKAC	3 cut(s)	207, 432, 552
XspI	CTAG	1 cut(s)	695
ZrmI	AGTACT	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.