Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015550

Physical Location & Seq

Genomic Coordinates Reverse (-)

20994321 .. 20995922

Gene Structure 1602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g26100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCTCTTCAGTCTTCACACAAAAGAATAAAAGCACCAAACATGTCTATCCCAGTTTTAGAGAAGGATAAAAAGCAGGAAGCCAATCCTCTCAAGGAACTAAAAGAGACACTACGCAGGCTTCAGAATCAGAAGCATGAGCTTCAGAAGAAGATCCTTGCAAATATTCTGAAGGCTCAACAAATGGTCGCAGCTGCGGATAGTAAGAAGGCACAGAAGCTATATGGTTCAATCGAAAGAAATTATGACCAATACGTGTTGAAAAAATATACAGAGAAGAAGGGGCGCTTACAGAAGAAAATCGATAAGCTAATGAATTTCAGCTTTTGCATTGAGAATCAGATTACTTTACTGCAAGGACAAGCTAATACTGAGAAAACACCGGTTTATGATGGCTCACCAAAAAACGAAGAACCTGCAGTGAAATCTCAGTACATGGACATGACAATGAACAATGATGAATTGAGGGAAATGTTAGATGAGATCAATAAGGCCATCGACTACATGCCATTGAAATCCTCAGCAAAATTAGGGAAGCGTTGTCAACATATACTGAACAAACCGTTTGTTTCGATGAAGAATAATCTCTGCAAGTTGTTTCGAAGTGTTAGATCAACTAGTGAAGGTCGACCAGGTCCGAGTCAGATAACAAATGGGGATAGAGGCCCTAGTCTCGCAACAACTCAACCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

26.43

Weight (kDa)

9.77

Isoelectric Point (pI)

62.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015550)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26100 FvH4_7g24971
rosa_laevigata	RLG00000027002
rosa_multiflora	Rmu_ssc0000248.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286160 Rroxscaffold_7G00173300
rosa_rugosa	Rorug01G0360100
rosa_samantha	Rh1AG369800 Rh1BG333400 Rh1CG346800 Rh1DG364600 Rh6AG357500 Rh6BG364400 Rh6CG371500 Rh6DG358300
rosa_wichuraiana	Rw6G031170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
AccI	GTMKAC	1 cut(s)	628
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	3 cut(s)	107, 128, 191
AfaI	GTAC	1 cut(s)	434
AflIII	ACRYGT	2 cut(s)	42, 255
AgeI	ACCGGT	1 cut(s)	382
AgsI	TTSAA	3 cut(s)	231, 262, 514
AhlI	ACTAGT	1 cut(s)	617
AjnI	CCWGG	1 cut(s)	631
AluBI	AGCT	6 cut(s)	142, 194, 220, 310, 324, 365
AluI	AGCT	6 cut(s)	142, 194, 220, 310, 324, 365
Alw26I	GTCTC	2 cut(s)	101, 677
AlwI	GGATC	1 cut(s)	148
AoxI	GGCC	2 cut(s)	492, 664
ApeKI	GCWGC	2 cut(s)	191, 194
ApoI	RAATTY	1 cut(s)	316
AsiGI	ACCGGT	1 cut(s)	382
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	2 cut(s)	635, 665
AsuHPI	GGTGA	1 cut(s)	390
AsuII	TTCGAA	1 cut(s)	601
AvaII	GGWCC	1 cut(s)	635
BbsI	GAAGAC	1 cut(s)	6
BbvCI	CCTCAGC	1 cut(s)	520
BbvI	GCAGC	2 cut(s)	181, 203
BccI	CCATC	2 cut(s)	386, 503
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	1 cut(s)	633
BcoDI	GTCTC	2 cut(s)	101, 677
BcuI	ACTAGT	1 cut(s)	617
BfaI	CTAG	2 cut(s)	618, 669
BfmI	CTRYAG	1 cut(s)	417
BfoI	RGCGCY	1 cut(s)	289
BfuAI	ACCTGC	1 cut(s)	424
BisI	GCNGC	2 cut(s)	192, 195
BlsI	GCNGC	2 cut(s)	193, 196
Bme1390I	CCNGG	1 cut(s)	633
Bme18I	GGWCC	1 cut(s)	635
BmgT120I	GGNCC	2 cut(s)	635, 665
BmrFI	CCNGG	1 cut(s)	633
BmrI	ACTGGG	1 cut(s)	47
BmuI	ACTGGG	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	6
Bpu10I	CCTNAGC	1 cut(s)	520
Bpu14I	TTCGAA	1 cut(s)	601
BpuEI	CTTGAG	1 cut(s)	77
Bsa29I	ATCGAT	1 cut(s)	303
BsaAI	YACGTR	1 cut(s)	256
BsaWI	WCCGGW	1 cut(s)	382
Bse118I	RCCGGY	1 cut(s)	382
Bse1I	ACTGG	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	633
BseCI	ATCGAT	1 cut(s)	303
BseMII	CTCAG	3 cut(s)	363, 443, 534
BseNI	ACTGG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	181, 203
BshFI	GGCC	2 cut(s)	494, 666
BshTI	ACCGGT	1 cut(s)	382
BshVI	ATCGAT	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	383
BsmAI	GTCTC	2 cut(s)	101, 677
BsnI	GGCC	2 cut(s)	494, 666
Bsp119I	TTCGAA	1 cut(s)	601
Bsp143I	GATC	3 cut(s)	153, 483, 611
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	2 cut(s)	494, 666
BspCNI	CTCAG	3 cut(s)	364, 442, 533
BspDI	ATCGAT	1 cut(s)	303
BspMAI	CTGCAG	1 cut(s)	421
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	601
BsrFI	RCCGGY	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	382
BssMI	GATC	3 cut(s)	153, 483, 611
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	1 cut(s)	564
Bst6I	CTCTTC	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	256
BstBI	TTCGAA	1 cut(s)	601
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	3 cut(s)	372, 429, 520
BstH2I	RGCGCY	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	3 cut(s)	156, 486, 614
BstMAI	GTCTC	2 cut(s)	101, 677
BstMBI	GATC	3 cut(s)	153, 483, 611
BstNI	CCWGG	1 cut(s)	633
BstNSI	RCATGY	2 cut(s)	46, 508
BstSCI	CCNGG	1 cut(s)	631
BstSFI	CTRYAG	1 cut(s)	417
BstV1I	GCAGC	2 cut(s)	181, 203
BstV2I	GAAGAC	1 cut(s)	6
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
Bsu15I	ATCGAT	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	494, 666
BsuTUI	ATCGAT	1 cut(s)	303
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	1 cut(s)	426
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	1 cut(s)	119
CfoI	GCGC	1 cut(s)	288
Cfr10I	RCCGGY	1 cut(s)	382
Cfr13I	GGNCC	2 cut(s)	635, 665
ClaI	ATCGAT	1 cut(s)	303
CsiI	ACCWGGT	1 cut(s)	631
Csp6I	GTAC	1 cut(s)	433
CspAI	ACCGGT	1 cut(s)	382
CviAII	CATG	5 cut(s)	43, 137, 436, 442, 505
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	3 cut(s)	372, 429, 520
DpnI	GATC	3 cut(s)	155, 485, 613
DpnII	GATC	3 cut(s)	153, 483, 611
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	635
Eco57I	CTGAAG	3 cut(s)	107, 128, 191
EcoO109I	RGGNCCY	1 cut(s)	665
EcoRII	CCWGG	1 cut(s)	631
FaeI	CATG	5 cut(s)	46, 140, 439, 445, 508
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FatI	CATG	5 cut(s)	42, 136, 435, 441, 504
FblI	GTMKAC	1 cut(s)	628
Fnu4HI	GCNGC	2 cut(s)	192, 195
Fsp4HI	GCNGC	2 cut(s)	192, 195
FspBI	CTAG	2 cut(s)	618, 669
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	2 cut(s)	192, 195
HaeII	RGCGCY	1 cut(s)	289
HaeIII	GGCC	2 cut(s)	494, 666
HapII	CCGG	1 cut(s)	383
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	5 cut(s)	46, 140, 439, 445, 508
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HincII	GTYRAC	2 cut(s)	545, 629
HindII	GTYRAC	2 cut(s)	545, 629
HinfI	GANTC	3 cut(s)	127, 337, 640
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	1 cut(s)	390
Hpy166II	GTNNAC	2 cut(s)	545, 629
Hpy188I	TCNGA	7 cut(s)	126, 132, 147, 171, 342, 639, 645
Hpy8I	GTNNAC	2 cut(s)	545, 629
HpyAV	CCTTC	5 cut(s)	58, 166, 202, 274, 617
HpyCH4III	ACNGT	1 cut(s)	564
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	5 cut(s)	161, 330, 355, 419, 591
HpyF3I	CTNAG	3 cut(s)	372, 429, 520
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	5 cut(s)	46, 140, 439, 445, 508
HspAI	GCGC	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	153, 483, 611
LguI	GCTCTTC	1 cut(s)	12
LpnPI	CCDG	7 cut(s)	62, 66, 103, 396, 429, 618, 645
Lsp1109I	GCAGC	2 cut(s)	181, 203
MabI	ACCWGGT	1 cut(s)	631
MaeI	CTAG	2 cut(s)	618, 669
MaeII	ACGT	1 cut(s)	255
MalI	GATC	3 cut(s)	155, 485, 613
MboI	GATC	3 cut(s)	153, 483, 611
MboII	GAAGA	7 cut(s)	6, 160, 163, 289, 307, 422, 589
MflI	RGATCY	1 cut(s)	153
MluCI	AATT	4 cut(s)	241, 316, 461, 527
MlyI	GAGTC	1 cut(s)	649
MnlI	CCTC	4 cut(s)	99, 459, 529, 656
MslI	CAYNNNNRTG	2 cut(s)	440, 446
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	633
MvaI	CCWGG	1 cut(s)	633
NdeII	GATC	3 cut(s)	153, 483, 611
NlaIII	CATG	5 cut(s)	46, 140, 439, 445, 508
NspI	RCATGY	2 cut(s)	46, 508
NspV	TTCGAA	1 cut(s)	601
PciI	ACATGT	1 cut(s)	42
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	127, 337
PflFI	GACNNNGTC	1 cut(s)	633
PinAI	ACCGGT	1 cut(s)	382
PkrI	GCNGC	2 cut(s)	193, 196
PleI	GAGTC	1 cut(s)	648
PpsI	GAGTC	1 cut(s)	648
Ppu21I	YACGTR	1 cut(s)	256
PscI	ACATGT	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	631
PspGI	CCWGG	1 cut(s)	631
PspPI	GGNCC	2 cut(s)	635, 665
PstI	CTGCAG	1 cut(s)	421
PsuI	RGATCY	1 cut(s)	153
PsyI	GACNNNGTC	1 cut(s)	633
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
RseI	CAYNNNNRTG	2 cut(s)	440, 446
SalI	GTCGAC	1 cut(s)	627
SapI	GCTCTTC	1 cut(s)	12
SatI	GCNGC	2 cut(s)	192, 195
Sau3AI	GATC	3 cut(s)	153, 483, 611
Sau96I	GGNCC	2 cut(s)	635, 665
SchI	GAGTC	1 cut(s)	649
ScrFI	CCNGG	1 cut(s)	633
SexAI	ACCWGGT	1 cut(s)	631
SfcI	CTRYAG	1 cut(s)	417
SfuI	TTCGAA	1 cut(s)	601
SinI	GGWCC	1 cut(s)	635
SmiMI	CAYNNNNRTG	2 cut(s)	440, 446
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
SpeI	ACTAGT	1 cut(s)	617
Sse9I	AATT	4 cut(s)	241, 316, 461, 527
SsiI	CCGC	1 cut(s)	197
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	2 cut(s)	618, 669
StyD4I	CCNGG	1 cut(s)	631
TaaI	ACNGT	1 cut(s)	564
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	6 cut(s)	234, 303, 498, 572, 601, 628
TasI	AATT	4 cut(s)	241, 316, 461, 527
TatI	WGTACW	1 cut(s)	432
TfiI	GAWTC	2 cut(s)	127, 337
TscAI	CASTG	1 cut(s)	426
TseI	GCWGC	2 cut(s)	191, 194
TspDTI	ATGAA	4 cut(s)	329, 464, 474, 590
TspRI	CASTG	1 cut(s)	426
Tth111I	GACNNNGTC	1 cut(s)	633
VpaK11BI	GGWCC	1 cut(s)	635
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	2 cut(s)	46, 508
XmiI	GTMKAC	1 cut(s)	628
XspI	CTAG	2 cut(s)	618, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.