Ribonuclease H protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g26100 FvH4_7g24971 |
| rosa_laevigata | RLG00000027002 |
| rosa_multiflora | Rmu_ssc0000248.1_g000009 |
| rosa_roxburghii | Rroxscaffold_4G00286160 Rroxscaffold_7G00173300 |
| rosa_rugosa | Rorug01G0360100 |
| rosa_samantha | Rh1AG369800 Rh1BG333400 Rh1CG346800 Rh1DG364600 Rh6AG357500 Rh6BG364400 Rh6CG371500 Rh6DG358300 |
| rosa_wichuraiana | Rw6G031170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 215 |
| AcsI | RAATTY | 3 cut(s) | 217, 427, 588 |
| AcuI | CTGAAG | 1 cut(s) | 62 |
| AfaI | GTAC | 1 cut(s) | 172 |
| AgsI | TTSAA | 2 cut(s) | 401, 415 |
| AluBI | AGCT | 4 cut(s) | 97, 149, 211, 225 |
| AluI | AGCT | 4 cut(s) | 97, 149, 211, 225 |
| Alw26I | GTCTC | 1 cut(s) | 56 |
| AoxI | GGCC | 1 cut(s) | 578 |
| ApeKI | GCWGC | 1 cut(s) | 146 |
| ApoI | RAATTY | 3 cut(s) | 217, 427, 588 |
| AspA2I | CCTAGG | 1 cut(s) | 581 |
| AsuHPI | GGTGA | 1 cut(s) | 291 |
| AvrII | CCTAGG | 1 cut(s) | 581 |
| BbvI | GCAGC | 1 cut(s) | 158 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 299, 333 |
| BcoDI | GTCTC | 1 cut(s) | 56 |
| BfaI | CTAG | 1 cut(s) | 582 |
| BfmI | CTRYAG | 1 cut(s) | 150 |
| BisI | GCNGC | 1 cut(s) | 147 |
| BlnI | CCTAGG | 1 cut(s) | 581 |
| BlsI | GCNGC | 1 cut(s) | 148 |
| Bpu10I | CCTNAGC | 1 cut(s) | 483 |
| BpuEI | CTTGAG | 1 cut(s) | 119 |
| BsaJI | CCNNGG | 1 cut(s) | 581 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 427, 457 |
| Bse1I | ACTGG | 1 cut(s) | 258 |
| Bse3DI | GCAATG | 1 cut(s) | 327 |
| BseDI | CCNNGG | 1 cut(s) | 581 |
| BseMI | GCAATG | 1 cut(s) | 327 |
| BseMII | CTCAG | 2 cut(s) | 435, 537 |
| BseNI | ACTGG | 1 cut(s) | 258 |
| BseRI | GAGGAG | 1 cut(s) | 563 |
| BseXI | GCAGC | 1 cut(s) | 158 |
| BshFI | GGCC | 1 cut(s) | 580 |
| BslFI | GGGAC | 1 cut(s) | 198 |
| BsmAI | GTCTC | 1 cut(s) | 56 |
| BsmFI | GGGAC | 1 cut(s) | 198 |
| BsmI | GAATGC | 1 cut(s) | 516 |
| BsnI | GGCC | 1 cut(s) | 580 |
| Bsp1407I | TGTACA | 1 cut(s) | 170 |
| Bsp143I | GATC | 1 cut(s) | 384 |
| BspANI | GGCC | 1 cut(s) | 580 |
| BspCNI | CTCAG | 2 cut(s) | 434, 538 |
| BsrDI | GCAATG | 1 cut(s) | 327 |
| BsrGI | TGTACA | 1 cut(s) | 170 |
| BsrI | ACTGG | 1 cut(s) | 258 |
| BssECI | CCNNGG | 1 cut(s) | 581 |
| BssMI | GATC | 1 cut(s) | 384 |
| BssT1I | CCWWGG | 1 cut(s) | 581 |
| BstAUI | TGTACA | 1 cut(s) | 170 |
| BstC8I | GCNNGC | 2 cut(s) | 74, 480 |
| BstDEI | CTNAG | 4 cut(s) | 330, 421, 483, 546 |
| BstKTI | GATC | 1 cut(s) | 387 |
| BstMAI | GTCTC | 1 cut(s) | 56 |
| BstMBI | GATC | 1 cut(s) | 384 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 445 |
| BstNSI | RCATGY | 2 cut(s) | 266, 409 |
| BstSFI | CTRYAG | 1 cut(s) | 150 |
| BstV1I | GCAGC | 1 cut(s) | 158 |
| BsuRI | GGCC | 1 cut(s) | 580 |
| Cac8I | GCNNGC | 2 cut(s) | 74, 480 |
| CseI | GACGC | 1 cut(s) | 195 |
| Csp6I | GTAC | 1 cut(s) | 171 |
| CviAII | CATG | 4 cut(s) | 263, 337, 343, 406 |
| CviJI | RGCY | 9 cut(s) | 38, 76, 97, 131, 149, 211, 225, 470, 580 |
| CviKI_1 | RGCY | 9 cut(s) | 38, 76, 97, 131, 149, 211, 225, 470, 580 |
| CviQI | GTAC | 1 cut(s) | 171 |
| DdeI | CTNAG | 4 cut(s) | 330, 421, 483, 546 |
| DpnI | GATC | 1 cut(s) | 386 |
| DpnII | GATC | 1 cut(s) | 384 |
| Eco130I | CCWWGG | 1 cut(s) | 581 |
| Eco147I | AGGCCT | 1 cut(s) | 580 |
| Eco57I | CTGAAG | 1 cut(s) | 62 |
| EcoT14I | CCWWGG | 1 cut(s) | 581 |
| EcoT22I | ATGCAT | 1 cut(s) | 518 |
| ErhI | CCWWGG | 1 cut(s) | 581 |
| FaeI | CATG | 4 cut(s) | 266, 340, 346, 409 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 173, 205 |
| FaqI | GGGAC | 1 cut(s) | 198 |
| FatI | CATG | 4 cut(s) | 262, 336, 342, 405 |
| Fnu4HI | GCNGC | 1 cut(s) | 147 |
| Fsp4HI | GCNGC | 1 cut(s) | 147 |
| FspBI | CTAG | 1 cut(s) | 582 |
| GluI | GCNGC | 1 cut(s) | 147 |
| HaeIII | GGCC | 1 cut(s) | 580 |
| HgaI | GACGC | 1 cut(s) | 195 |
| Hin1II | CATG | 4 cut(s) | 266, 340, 346, 409 |
| HindIII | AAGCTT | 2 cut(s) | 95, 209 |
| HinfI | GANTC | 4 cut(s) | 82, 238, 296, 314 |
| HphI | GGTGA | 1 cut(s) | 291 |
| Hpy188I | TCNGA | 4 cut(s) | 81, 87, 243, 424 |
| HpyAV | CCTTC | 6 cut(s) | 16, 100, 121, 175, 251, 449 |
| HpyCH4V | TGCA | 6 cut(s) | 116, 231, 320, 409, 516, 575 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 445 |
| HpyF3I | CTNAG | 4 cut(s) | 330, 421, 483, 546 |
| Hsp92II | CATG | 4 cut(s) | 266, 340, 346, 409 |
| Kzo9I | GATC | 1 cut(s) | 384 |
| LpnPI | CCDG | 5 cut(s) | 17, 58, 239, 297, 546 |
| Lsp1109I | GCAGC | 1 cut(s) | 158 |
| MaeI | CTAG | 1 cut(s) | 582 |
| MaeIII | GTNAC | 1 cut(s) | 541 |
| MalI | GATC | 1 cut(s) | 386 |
| MboI | GATC | 1 cut(s) | 384 |
| MboII | GAAGA | 4 cut(s) | 115, 190, 208, 323 |
| MfeI | CAATTG | 1 cut(s) | 410 |
| MluCI | AATT | 8 cut(s) | 12, 53, 118, 217, 362, 410, 427, 588 |
| MlyI | GAGTC | 1 cut(s) | 290 |
| MnlI | CCTC | 6 cut(s) | 54, 360, 429, 430, 540, 541 |
| Mph1103I | ATGCAT | 1 cut(s) | 518 |
| MseI | TTAA | 2 cut(s) | 56, 140 |
| MslI | CAYNNNNRTG | 3 cut(s) | 341, 347, 504 |
| MspA1I | CMGCKG | 1 cut(s) | 149 |
| MunI | CAATTG | 1 cut(s) | 410 |
| Mva1269I | GAATGC | 1 cut(s) | 516 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 445 |
| NdeII | GATC | 1 cut(s) | 384 |
| NlaIII | CATG | 4 cut(s) | 266, 340, 346, 409 |
| NsiI | ATGCAT | 1 cut(s) | 518 |
| NspI | RCATGY | 2 cut(s) | 266, 409 |
| PceI | AGGCCT | 1 cut(s) | 580 |
| PctI | GAATGC | 1 cut(s) | 516 |
| PfeI | GAWTC | 3 cut(s) | 82, 238, 314 |
| PkrI | GCNGC | 1 cut(s) | 148 |
| PleI | GAGTC | 1 cut(s) | 290 |
| PpsI | GAGTC | 1 cut(s) | 290 |
| PsiI | TTATAA | 1 cut(s) | 215 |
| PvuII | CAGCTG | 1 cut(s) | 149 |
| RsaI | GTAC | 1 cut(s) | 172 |
| RsaNI | GTAC | 1 cut(s) | 171 |
| RseI | CAYNNNNRTG | 3 cut(s) | 341, 347, 504 |
| SaqAI | TTAA | 2 cut(s) | 56, 140 |
| SatI | GCNGC | 1 cut(s) | 147 |
| Sau3AI | GATC | 1 cut(s) | 384 |
| SchI | GAGTC | 1 cut(s) | 290 |
| SetI | ASST | 7 cut(s) | 99, 111, 151, 213, 227, 286, 532 |
| SfcI | CTRYAG | 1 cut(s) | 150 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 341, 347, 504 |
| SmlI | CTYRAG | 1 cut(s) | 98 |
| SmoI | CTYRAG | 1 cut(s) | 98 |
| Sse9I | AATT | 8 cut(s) | 12, 53, 118, 217, 362, 410, 427, 588 |
| SseBI | AGGCCT | 1 cut(s) | 580 |
| SspMI | CTAG | 1 cut(s) | 582 |
| StuI | AGGCCT | 1 cut(s) | 580 |
| StyI | CCWWGG | 1 cut(s) | 581 |
| TaqI | TCGA | 1 cut(s) | 204 |
| TasI | AATT | 8 cut(s) | 12, 53, 118, 217, 362, 410, 427, 588 |
| TatI | WGTACW | 1 cut(s) | 170 |
| TfiI | GAWTC | 3 cut(s) | 82, 238, 314 |
| Tru1I | TTAA | 2 cut(s) | 56, 140 |
| Tru9I | TTAA | 2 cut(s) | 56, 140 |
| TseI | GCWGC | 1 cut(s) | 146 |
| TspDTI | ATGAA | 2 cut(s) | 338, 375 |
| TspGWI | ACGGA | 1 cut(s) | 467 |
| XapI | RAATTY | 3 cut(s) | 217, 427, 588 |
| XceI | RCATGY | 2 cut(s) | 266, 409 |
| XmaJI | CCTAGG | 1 cut(s) | 581 |
| XspI | CTAG | 1 cut(s) | 582 |
| Zsp2I | ATGCAT | 1 cut(s) | 518 |