Rh1BG333400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0015550
Physical Location & Seq
Reverse (-)
46894482 .. 46895150
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG333400.1

Sequence Viewer

Length: 669 bp
ATGTCTCTTCACCAAAAGGGAAAAGTAAAGGCAAGCATGTCTCTTGAAGTCTTTGAAAGAGATGAGCCAGAATTCGATCCCCGTCTCCATCAACGGGACCTTGATAAACAGAGCCTAGAGCTTAAGAACCTTAAAGAATTGGAAGAGATACATCAGAAGCTTGAGAAACAGAAGCAAGAGCTTGAGAAGAAGGTCGGCGCACAAAACCAAAAGGCTCAACAATATGCTGCAGCTGCAGAGACCAAGAACGCTATACAAGTCATTCCTAAACTACTTGACCTATATGCCGTGCATAAATCTAAGAAGAAAAAGGAGCGATTACAAAGAAAAATCGACAAGCTTGAAATCGATGAATTCGCCATTGATATTCAGATTACACTACTCGAAGGACGTGCTAAAGTTGAGGAAAAGCCGGTTTATGATGATGAATCACCCATAAAGGAAAAATCTGCAGTGAACAAGTCCCTAGAAAAAGACATGGCTATGAACAATGTTGAATTGAGGGAAACAATACATGAGATCAATAAGGATATTAAGTACATGCAACTTAAATCCTTGGCAAAATTAGGGAGCTATTGTCAGCACATGTTGAAGAAGCCGTTCATCTCGATGAAGAATAATCTATGCAAAGGGTTAAGAAGTGACAGCAAATTAAGGGTTAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

25.89

Weight (kDa)

9.33

Isoelectric Point (pI)

38.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 71
AcsI RAATTY 2 cut(s) 71, 353
AfaI GTAC 1 cut(s) 539
AfiI CCNNNNNNNGG 1 cut(s) 94
AflII CTTAAG 1 cut(s) 122
AflIII ACRYGT 1 cut(s) 585
AgsI TTSAA 5 cut(s) 47, 56, 344, 497, 592
AjiI CACGTC 1 cut(s) 392
AluBI AGCT 6 cut(s) 121, 160, 181, 233, 340, 573
AluI AGCT 6 cut(s) 121, 160, 181, 233, 340, 573
Alw26I GTCTC 4 cut(s) 9, 45, 89, 233
AlwI GGATC 1 cut(s) 71
ApeKI GCWGC 3 cut(s) 227, 230, 233
ApoI RAATTY 2 cut(s) 71, 353
Asp700I GAANNNNTTC 1 cut(s) 599
AspLEI GCGC 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 423
AvaII GGWCC 1 cut(s) 97
BbvI GCAGC 3 cut(s) 214, 220, 242
BccI CCATC 1 cut(s) 96
BceAI ACGGC 2 cut(s) 272, 583
BcgI CGANNNNNNTGC 2 cut(s) 374, 408
BcoDI GTCTC 4 cut(s) 9, 45, 89, 233
BfaI CTAG 2 cut(s) 116, 467
BfmI CTRYAG 3 cut(s) 228, 234, 450
BfrI CTTAAG 1 cut(s) 122
BisI GCNGC 3 cut(s) 228, 231, 234
BlsI GCNGC 3 cut(s) 229, 232, 235
Bme18I GGWCC 1 cut(s) 97
BmgBI CACGTC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 98
BpuEI CTTGAG 2 cut(s) 182, 203
Bsa29I ATCGAT 1 cut(s) 348
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 555
BsaXI ACNNNNNCTCC 2 cut(s) 562, 592
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse118I RCCGGY 1 cut(s) 412
BseCI ATCGAT 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 555
BseLI CCNNNNNNNGG 1 cut(s) 94
BseXI GCAGC 3 cut(s) 214, 220, 242
BshVI ATCGAT 1 cut(s) 348
BsiSI CCGG 1 cut(s) 413
BslFI GGGAC 2 cut(s) 110, 448
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 4 cut(s) 9, 45, 89, 233
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 2 cut(s) 110, 448
Bso31I GGTCTC 1 cut(s) 233
Bsp143I GATC 2 cut(s) 76, 519
BspDI ATCGAT 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 98
BspMAI CTGCAG 3 cut(s) 232, 238, 454
BspPI GGATC 1 cut(s) 71
BspTI CTTAAG 1 cut(s) 122
BspTNI GGTCTC 1 cut(s) 233
BsrFI RCCGGY 1 cut(s) 412
BssAI RCCGGY 1 cut(s) 412
BssECI CCNNGG 1 cut(s) 555
BssMI GATC 2 cut(s) 76, 519
BssT1I CCWWGG 1 cut(s) 555
Bst6I CTCTTC 2 cut(s) 12, 138
BstAFI CTTAAG 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 300
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 2 cut(s) 79, 522
BstMAI GTCTC 4 cut(s) 9, 45, 89, 233
BstMBI GATC 2 cut(s) 76, 519
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNSI RCATGY 3 cut(s) 40, 544, 589
BstSFI CTRYAG 3 cut(s) 228, 234, 450
BstV1I GCAGC 3 cut(s) 214, 220, 242
Bsu15I ATCGAT 1 cut(s) 348
BsuTUI ATCGAT 1 cut(s) 348
BtrI CACGTC 1 cut(s) 392
BtsI GCAGTG 1 cut(s) 459
BtsIMutI CAGTG 1 cut(s) 459
Cac8I GCNNGC 1 cut(s) 34
CfoI GCGC 1 cut(s) 200
Cfr10I RCCGGY 1 cut(s) 412
Cfr13I GGNCC 1 cut(s) 97
ClaI ATCGAT 1 cut(s) 348
Csp6I GTAC 1 cut(s) 538
CviAII CATG 5 cut(s) 37, 478, 515, 541, 586
CviQI GTAC 1 cut(s) 538
DdeI CTNAG 1 cut(s) 300
DpnI GATC 2 cut(s) 78, 521
DpnII GATC 2 cut(s) 76, 519
Eam1104I CTCTTC 2 cut(s) 12, 138
EarI CTCTTC 2 cut(s) 12, 138
Eco130I CCWWGG 1 cut(s) 555
Eco31I GGTCTC 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 97
EcoO109I RGGNCCY 1 cut(s) 97
EcoRI GAATTC 2 cut(s) 71, 353
EcoT14I CCWWGG 1 cut(s) 555
ErhI CCWWGG 1 cut(s) 555
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 5 cut(s) 40, 481, 518, 544, 589
FaqI GGGAC 2 cut(s) 110, 448
FatI CATG 5 cut(s) 36, 477, 514, 540, 585
Fnu4HI GCNGC 3 cut(s) 228, 231, 234
Fsp4HI GCNGC 3 cut(s) 228, 231, 234
FspBI CTAG 2 cut(s) 116, 467
GlaI GCGC 1 cut(s) 199
GluI GCNGC 3 cut(s) 228, 231, 234
HapII CCGG 1 cut(s) 413
HhaI GCGC 1 cut(s) 200
Hin1II CATG 5 cut(s) 40, 481, 518, 544, 589
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HindIII AAGCTT 2 cut(s) 158, 338
HinfI GANTC 1 cut(s) 428
HpaII CCGG 1 cut(s) 413
HphI GGTGA 1 cut(s) 423
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 2 cut(s) 156, 372
Hpy188III TCNNGA 2 cut(s) 44, 607
Hpy8I GTNNAC 1 cut(s) 457
HpyAV CCTTC 2 cut(s) 184, 380
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 6 cut(s) 230, 236, 292, 452, 544, 627
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 5 cut(s) 40, 481, 518, 544, 589
HspAI GCGC 1 cut(s) 198
Kzo9I GATC 2 cut(s) 76, 519
LmnI GCTCC 2 cut(s) 313, 570
LpnPI CCDG 2 cut(s) 81, 426
Lsp1109I GCAGC 3 cut(s) 214, 220, 242
MaeI CTAG 2 cut(s) 116, 467
MaeII ACGT 1 cut(s) 391
MaeIII GTNAC 1 cut(s) 641
MalI GATC 2 cut(s) 78, 521
MboI GATC 2 cut(s) 76, 519
MboII GAAGA 5 cut(s) 155, 199, 316, 604, 625
MluCI AATT 6 cut(s) 71, 137, 353, 497, 563, 650
MnlI CCTC 2 cut(s) 397, 495
MroXI GAANNNNTTC 1 cut(s) 599
MseI TTAA 7 cut(s) 123, 132, 534, 549, 635, 653, 660
MslI CAYNNNNRTG 2 cut(s) 482, 608
MspA1I CMGCKG 1 cut(s) 233
MspCI CTTAAG 1 cut(s) 122
MspI CCGG 1 cut(s) 413
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 2 cut(s) 76, 519
NlaIII CATG 5 cut(s) 40, 481, 518, 544, 589
NlaIV GGNNCC 1 cut(s) 98
NmuCI GTSAC 1 cut(s) 641
NspI RCATGY 3 cut(s) 40, 544, 589
PciI ACATGT 1 cut(s) 585
PdmI GAANNNNTTC 1 cut(s) 599
PfeI GAWTC 1 cut(s) 428
PkrI GCNGC 3 cut(s) 229, 232, 235
PpuMI RGGWCCY 1 cut(s) 97
PscI ACATGT 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 98
PspPI GGNCC 1 cut(s) 97
PspPPI RGGWCCY 1 cut(s) 97
PstI CTGCAG 3 cut(s) 232, 238, 454
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 1 cut(s) 539
RsaNI GTAC 1 cut(s) 538
RseI CAYNNNNRTG 2 cut(s) 482, 608
SaqAI TTAA 7 cut(s) 123, 132, 534, 549, 635, 653, 660
SatI GCNGC 3 cut(s) 228, 231, 234
Sau3AI GATC 2 cut(s) 76, 519
Sau96I GGNCC 1 cut(s) 97
SfcI CTRYAG 3 cut(s) 228, 234, 450
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 2 cut(s) 482, 608
SmlI CTYRAG 3 cut(s) 122, 161, 182
SmoI CTYRAG 3 cut(s) 122, 161, 182
Sse9I AATT 6 cut(s) 71, 137, 353, 497, 563, 650
SspMI CTAG 2 cut(s) 116, 467
StyI CCWWGG 1 cut(s) 555
TaiI ACGT 1 cut(s) 394
TaqI TCGA 5 cut(s) 75, 333, 348, 384, 608
TasI AATT 6 cut(s) 71, 137, 353, 497, 563, 650
TatI WGTACW 1 cut(s) 537
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 7 cut(s) 123, 132, 534, 549, 635, 653, 660
Tru9I TTAA 7 cut(s) 123, 132, 534, 549, 635, 653, 660
TscAI CASTG 1 cut(s) 459
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 3 cut(s) 227, 230, 233
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 5 cut(s) 366, 441, 500, 592, 626
TspRI CASTG 1 cut(s) 459
Vha464I CTTAAG 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 2 cut(s) 71, 353
XceI RCATGY 3 cut(s) 40, 544, 589
XmnI GAANNNNTTC 1 cut(s) 599
XspI CTAG 2 cut(s) 116, 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.