Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0015550

Physical Location & Seq

Genomic Coordinates Reverse (-)

19162629 .. 19163389

Gene Structure 761 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24971.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTCTCTTGACCAGATAGAGAAACTAAAAGCAAGCTTGTTGCTCACGATCTATGAAGGAGATAAGCGAGGAGACGAGGCTGTTGAAGAATTAAAAGAGACAAAGGGGAAGCTTCAGGAACAGGAGGAAGAGCTTGAGAAGAAGGTCAAAGCACAATTCCAAAAGTCTCAACAATATAGTGCAGCAGCGAAGGCGAAGACGCCTCTACAAGTTGTTCCTAAGCTGCTTGACCTATATGCCTTAGATAAATGTAAGAAGAAAAAGGAGAGCCTGCAAAAGAAAATCGACAAGGTTAAAAACGATGAATTTGAAGTCGAGCTTCAGATTACACTACGTGAAGGACGTAGTAAAGTTGAGAAAGAGCCTATTTACGATGATGATTTACCCATAAACAAAAATCCTGCAATTGACGACTCATTAGAAAAAGACATGACAATGAACAATGATGAGTTGAGGAGAACAATACATGAGAGCAATAAGCATATCAAAGTCATGCAACTCAAACCCTTGGCAAAATTTCAGCACAAGATAAAGAAGCCGTTCATCTCGATGAAGAATAATATGTGCAAGCTATTTTCGAGTGCAGGTCAAAATACTGCAACCACTAGATCAACAATTAAAGTAGTTGCTAAGTTAATGCTAATTTCCTCAGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

25.21

Weight (kDa)

9.13

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015550)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26100 FvH4_7g24971
rosa_laevigata	RLG00000027002
rosa_multiflora	Rmu_ssc0000248.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286160 Rroxscaffold_7G00173300
rosa_rugosa	Rorug01G0360100
rosa_samantha	Rh1AG369800 Rh1BG333400 Rh1CG346800 Rh1DG364600 Rh6AG357500 Rh6BG364400 Rh6CG371500 Rh6DG358300
rosa_wichuraiana	Rw6G031170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	575
AcsI	RAATTY	3 cut(s)	305, 515, 653
AcuI	CTGAAG	2 cut(s)	98, 305
AcyI	GRCGYC	1 cut(s)	200
AdeI	CACNNNGTG	1 cut(s)	335
AgsI	TTSAA	2 cut(s)	86, 311
AluBI	AGCT	6 cut(s)	36, 112, 133, 223, 319, 571
AluI	AGCT	6 cut(s)	36, 112, 133, 223, 319, 571
Alw26I	GTCTC	4 cut(s)	9, 66, 92, 171
ApeKI	GCWGC	3 cut(s)	182, 185, 223
ApoI	RAATTY	3 cut(s)	305, 515, 653
Asp700I	GAANNNNTTC	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	203
BbvI	GCAGC	3 cut(s)	194, 197, 210
BceAI	ACGGC	1 cut(s)	523
BcoDI	GTCTC	4 cut(s)	9, 66, 92, 171
BfaI	CTAG	1 cut(s)	606
BfuAI	ACCTGC	1 cut(s)	575
BisI	GCNGC	3 cut(s)	183, 186, 224
BlsI	GCNGC	3 cut(s)	184, 187, 225
BpiI	GAAGAC	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	155
BsaAI	YACGTR	1 cut(s)	335
BsaHI	GRCGYC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	507
BseRI	GAGGAG	2 cut(s)	84, 469
BseXI	GCAGC	3 cut(s)	194, 197, 210
BsgI	GTGCAG	2 cut(s)	201, 603
BsmAI	GTCTC	4 cut(s)	9, 66, 92, 171
BsmBI	CGTCTC	1 cut(s)	66
Bsp143I	GATC	2 cut(s)	48, 608
BspMI	ACCTGC	1 cut(s)	575
BspQI	GCTCTTC	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	2 cut(s)	48, 608
BssNI	GRCGYC	1 cut(s)	200
BssT1I	CCWWGG	1 cut(s)	507
Bst6I	CTCTTC	1 cut(s)	123
BstACI	GRCGYC	1 cut(s)	200
BstBAI	YACGTR	1 cut(s)	335
BstC8I	GCNNGC	3 cut(s)	34, 272, 569
BstDEI	CTNAG	4 cut(s)	219, 241, 630, 649
BstKTI	GATC	2 cut(s)	51, 611
BstMAI	GTCTC	4 cut(s)	9, 66, 92, 171
BstMBI	GATC	2 cut(s)	48, 608
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstV1I	GCAGC	3 cut(s)	194, 197, 210
BstV2I	GAAGAC	1 cut(s)	203
BveI	ACCTGC	1 cut(s)	575
Cac8I	GCNNGC	3 cut(s)	34, 272, 569
CseI	GACGC	1 cut(s)	208
CviAII	CATG	3 cut(s)	430, 467, 493
DdeI	CTNAG	4 cut(s)	219, 241, 630, 649
DpnI	GATC	2 cut(s)	50, 610
DpnII	GATC	2 cut(s)	48, 608
DraIII	CACNNNGTG	1 cut(s)	335
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	507
Eco57I	CTGAAG	2 cut(s)	98, 305
EcoT14I	CCWWGG	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	507
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	3 cut(s)	433, 470, 496
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	3 cut(s)	429, 466, 492
Fnu4HI	GCNGC	3 cut(s)	183, 186, 224
Fsp4HI	GCNGC	3 cut(s)	183, 186, 224
FspBI	CTAG	1 cut(s)	606
GluI	GCNGC	3 cut(s)	183, 186, 224
HgaI	GACGC	1 cut(s)	208
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	3 cut(s)	433, 470, 496
HindIII	AAGCTT	2 cut(s)	34, 110
HinfI	GANTC	1 cut(s)	413
Hpy188I	TCNGA	2 cut(s)	324, 652
Hpy188III	TCNNGA	4 cut(s)	8, 46, 116, 547
HpyAV	CCTTC	4 cut(s)	50, 136, 184, 332
HpyCH4IV	ACGT	2 cut(s)	334, 343
HpyCH4V	TGCA	7 cut(s)	182, 274, 404, 496, 567, 584, 599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	4 cut(s)	219, 241, 630, 649
HpySE526I	ACGT	2 cut(s)	334, 343
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	3 cut(s)	433, 470, 496
Kzo9I	GATC	2 cut(s)	48, 608
LguI	GCTCTTC	1 cut(s)	123
LpnPI	CCDG	6 cut(s)	26, 101, 107, 284, 414, 570
Lsp1109I	GCAGC	3 cut(s)	194, 197, 210
MaeI	CTAG	1 cut(s)	606
MaeII	ACGT	2 cut(s)	334, 343
MalI	GATC	2 cut(s)	50, 610
MboI	GATC	2 cut(s)	48, 608
MboII	GAAGA	6 cut(s)	98, 140, 151, 208, 268, 565
MfeI	CAATTG	1 cut(s)	405
MluCI	AATT	8 cut(s)	89, 155, 305, 405, 515, 615, 642, 653
MlyI	GAGTC	1 cut(s)	407
MnlI	CCTC	6 cut(s)	62, 70, 118, 213, 447, 658
MroXI	GAANNNNTTC	1 cut(s)	539
MseI	TTAA	4 cut(s)	92, 294, 618, 635
MslI	CAYNNNNRTG	2 cut(s)	434, 548
MunI	CAATTG	1 cut(s)	405
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeII	GATC	2 cut(s)	48, 608
NlaIII	CATG	3 cut(s)	433, 470, 496
PciSI	GCTCTTC	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	340
PdmI	GAANNNNTTC	1 cut(s)	539
PkrI	GCNGC	3 cut(s)	184, 187, 225
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
Ppu21I	YACGTR	1 cut(s)	335
RseI	CAYNNNNRTG	2 cut(s)	434, 548
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	4 cut(s)	92, 294, 618, 635
SatI	GCNGC	3 cut(s)	183, 186, 224
Sau3AI	GATC	2 cut(s)	48, 608
SchI	GAGTC	1 cut(s)	407
SmiMI	CAYNNNNRTG	2 cut(s)	434, 548
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	8 cut(s)	89, 155, 305, 405, 515, 615, 642, 653
SspMI	CTAG	1 cut(s)	606
StyI	CCWWGG	1 cut(s)	507
TaiI	ACGT	2 cut(s)	337, 346
TaqI	TCGA	4 cut(s)	285, 315, 548, 578
TasI	AATT	8 cut(s)	89, 155, 305, 405, 515, 615, 642, 653
Tru1I	TTAA	4 cut(s)	92, 294, 618, 635
Tru9I	TTAA	4 cut(s)	92, 294, 618, 635
TseI	GCWGC	3 cut(s)	182, 185, 223
TspDTI	ATGAA	5 cut(s)	69, 318, 452, 532, 566
XapI	RAATTY	3 cut(s)	305, 515, 653
XmnI	GAANNNNTTC	1 cut(s)	539
XspI	CTAG	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.