Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0015550

Physical Location & Seq

Genomic Coordinates Reverse (-)

59385793 .. 59386949

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG364400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTCTATCACAGTTTTTGAGAAGGATAAGCAGGAAGCCAATCCTCTCAAAGAATTAAATGAGACACTTCGCAGGCTTCAGAATCAGAAGCATAAGCTTGAGAAGAAGGTCTGTGCAAATTATTGGAAGGCTCAACGATTAAACGCAGCTGTAGAGAGTAAGAAGGCCCTACATATTAATAAAGTATATAATCAATACGTGTTGAGAGAATGTACAGAGAAGAAGGGACGTTTACAGAAGAAAATCGACAAGCTTATAAATTTCAGCTTTTGCATTGAGAATCAGATTACTTTACTGGAAGGACATGCTAATATTGGGAAAACACCTGTTTATGATGACTCACCAACAAACGAAGAATCTGCAATGAAATCTAAGGACATGGAAATGACAATGAACAATGATGAATTGAGGGAAATGATAGATGAGATCAATAAGGACATTGAATACATGCAATTGAAATCCTCAGAAAAATTAAGGAGGCGTTGTCGGCACACATTGAACAAACCATTTGTTTCAATGAAGAATAATCTCTGCAAGTTGTTTCAAGGTGATAAATCAGTGATGATATCATGGAGTAAGCCTGGCAATGGTGCTTTTAGATTGAATGTTGATGGATCCAAGTCTAATGGTGGTTTGATTGGTGTGGGAGGAGTGATTAGAGACAGTTCTCCAGTTAGGAGTGTTACAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

230

Amino Acids

26.36

Weight (kDa)

9.45

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015550)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26100 FvH4_7g24971
rosa_laevigata	RLG00000027002
rosa_multiflora	Rmu_ssc0000248.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286160 Rroxscaffold_7G00173300
rosa_rugosa	Rorug01G0360100
rosa_samantha	Rh1AG369800 Rh1BG333400 Rh1CG346800 Rh1DG364600 Rh6AG357500 Rh6BG364400 Rh6CG371500 Rh6DG358300
rosa_wichuraiana	Rw6G031170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AclWI	GGATC	2 cut(s)	609, 622
AcsI	RAATTY	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	1 cut(s)	587
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	6 cut(s)	443, 457, 499, 516, 545, 604
AjnI	CCWGG	1 cut(s)	580
AluBI	AGCT	4 cut(s)	97, 149, 253, 267
AluI	AGCT	4 cut(s)	97, 149, 253, 267
Alw26I	GTCTC	2 cut(s)	56, 654
AlwI	GGATC	2 cut(s)	609, 622
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	259
AseI	ATTAAT	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	333, 560
BamHI	GGATCC	1 cut(s)	614
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	1 cut(s)	605
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	1 cut(s)	582
BcoDI	GTCTC	2 cut(s)	56, 654
BfmI	CTRYAG	1 cut(s)	150
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	582
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	616
BmrFI	CCNGG	1 cut(s)	582
BpmI	CTGGAG	1 cut(s)	654
BpuEI	CTTGAG	1 cut(s)	119
BsaAI	YACGTR	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	469, 499
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
Bse1I	ACTGG	2 cut(s)	300, 671
Bse3DI	GCAATG	2 cut(s)	369, 592
BseBI	CCWGG	1 cut(s)	582
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseMI	GCAATG	2 cut(s)	369, 592
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	2 cut(s)	300, 671
BseRI	GAGGAG	1 cut(s)	663
BseXI	GCAGC	1 cut(s)	158
BshFI	GGCC	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	587
BsmAI	GTCTC	2 cut(s)	56, 654
BsmFI	GGGAC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	167
Bsp1407I	TGTACA	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	426, 614
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	476
BspLI	GGNNCC	1 cut(s)	616
BspPI	GGATC	2 cut(s)	609, 622
BsrDI	GCAATG	2 cut(s)	369, 592
BsrGI	TGTACA	1 cut(s)	212
BsrI	ACTGG	2 cut(s)	300, 671
BssMI	GATC	2 cut(s)	426, 614
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	2 cut(s)	13, 665
BstAUI	TGTACA	1 cut(s)	212
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	2 cut(s)	372, 463
BstKTI	GATC	2 cut(s)	429, 617
BstMAI	GTCTC	2 cut(s)	56, 654
BstMBI	GATC	2 cut(s)	426, 614
BstMWI	GCNNNNNNNGC	1 cut(s)	487
BstNI	CCWGG	1 cut(s)	582
BstNSI	RCATGY	2 cut(s)	308, 451
BstSCI	CCNGG	1 cut(s)	580
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	614
BstYI	RGATCY	1 cut(s)	614
BsuRI	GGCC	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	4 cut(s)	305, 379, 448, 570
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	2 cut(s)	372, 463
DpnI	GATC	2 cut(s)	428, 616
DpnII	GATC	2 cut(s)	426, 614
Eco32I	GATATC	1 cut(s)	567
Eco57I	CTGAAG	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	580
EcoRV	GATATC	1 cut(s)	567
FaeI	CATG	4 cut(s)	308, 382, 451, 573
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	4 cut(s)	304, 378, 447, 569
Fnu4HI	GCNGC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	654
HaeIII	GGCC	1 cut(s)	167
Hin1II	CATG	4 cut(s)	308, 382, 451, 573
HindIII	AAGCTT	2 cut(s)	95, 251
HinfI	GANTC	4 cut(s)	82, 280, 338, 356
HphI	GGTGA	2 cut(s)	333, 560
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	4 cut(s)	81, 87, 285, 466
Hpy8I	GTNNAC	1 cut(s)	233
HpyAV	CCTTC	6 cut(s)	16, 100, 121, 157, 217, 293
HpyCH4III	ACNGT	2 cut(s)	13, 665
HpyCH4IV	ACGT	2 cut(s)	198, 229
HpyCH4V	TGCA	5 cut(s)	116, 273, 362, 451, 534
HpyF10VI	GCNNNNNNNGC	1 cut(s)	487
HpyF3I	CTNAG	2 cut(s)	372, 463
HpySE526I	ACGT	2 cut(s)	198, 229
Hsp92II	CATG	4 cut(s)	308, 382, 451, 573
Kzo9I	GATC	2 cut(s)	426, 614
LpnPI	CCDG	8 cut(s)	17, 58, 281, 339, 567, 594, 672, 684
Lsp1109I	GCAGC	1 cut(s)	158
MaeII	ACGT	2 cut(s)	198, 229
MaeIII	GTNAC	1 cut(s)	682
MalI	GATC	2 cut(s)	428, 616
MboI	GATC	2 cut(s)	426, 614
MboII	GAAGA	5 cut(s)	115, 232, 250, 365, 532
MfeI	CAATTG	1 cut(s)	452
MflI	RGATCY	1 cut(s)	614
MluCI	AATT	6 cut(s)	53, 118, 259, 404, 452, 470
MlyI	GAGTC	1 cut(s)	332
MnlI	CCTC	5 cut(s)	54, 402, 471, 472, 641
MseI	TTAA	4 cut(s)	56, 140, 177, 473
MslI	CAYNNNNRTG	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	582
MunI	CAATTG	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	582
MwoI	GCNNNNNNNGC	1 cut(s)	487
NdeII	GATC	2 cut(s)	426, 614
NlaIII	CATG	4 cut(s)	308, 382, 451, 573
NlaIV	GGNNCC	1 cut(s)	616
NspI	RCATGY	2 cut(s)	308, 451
PfeI	GAWTC	3 cut(s)	82, 280, 356
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
Ppu21I	YACGTR	1 cut(s)	199
PshBI	ATTAAT	1 cut(s)	177
PsiI	TTATAA	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	580
PspN4I	GGNNCC	1 cut(s)	616
PspPI	GGNCC	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	614
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
RseI	CAYNNNNRTG	1 cut(s)	383
SaqAI	TTAA	4 cut(s)	56, 140, 177, 473
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	426, 614
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	582
SetI	ASST	9 cut(s)	99, 111, 151, 201, 232, 255, 269, 328, 550
SfcI	CTRYAG	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	6 cut(s)	53, 118, 259, 404, 452, 470
SspI	AATATT	1 cut(s)	313
StyD4I	CCNGG	1 cut(s)	580
TaaI	ACNGT	2 cut(s)	13, 665
TaiI	ACGT	2 cut(s)	201, 232
TaqI	TCGA	1 cut(s)	246
TasI	AATT	6 cut(s)	53, 118, 259, 404, 452, 470
TatI	WGTACW	1 cut(s)	212
TfiI	GAWTC	3 cut(s)	82, 280, 356
Tru1I	TTAA	4 cut(s)	56, 140, 177, 473
Tru9I	TTAA	4 cut(s)	56, 140, 177, 473
TscAI	CASTG	1 cut(s)	564
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	4 cut(s)	380, 407, 417, 533
TspRI	CASTG	1 cut(s)	564
VspI	ATTAAT	1 cut(s)	177
XapI	RAATTY	1 cut(s)	259
XceI	RCATGY	2 cut(s)	308, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.