Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0015550

Physical Location & Seq

Genomic Coordinates Forward (+)

7624163 .. 7625127

Gene Structure 965 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027002

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAAATTTCTCGGCTATGATTTTCTCCGTATCCTATTAGCAACTAGATTCTTTAGTCCAGATTTAGAGAAGAAGAACGAGCTCATAGAATCAGGTACTGTTACTACGCCTAGTGATTTCGTTGAAGGGTTAGTAAAGATCGATTTTGTATTTCTCGTGTTTTGGAAACGAATGTCTCTTCAACAAAAGGGAAAAGTAAAGGCAAGCATGTCTCTTGAAGTCTTTGAAAGAGATGAGCCAGGATTCGATCCCTTTAGAGAAATGTATCTCCATCAACGGGAGCTTGATAAACAGAAACAAGAGCTTAAGAACCTTGAAGAATTGGAAGAGATACATCACAAGCTTGAGAAACAGAAGCAAGAGCTTGAGAAGAAGGTCCGCGAACAAAACCAAAAGGCTCAACAGTATGCTGCAGCTGCAGAGACCAAGAAGGCTATACAAGTCATTCCTAAACTACTTGACCTATATGCCGTGCATAAATCTAAGAAGAAAAAGAAGCGATTACAAAGAAAAATCGACAAGCTTGAAATTGATGAATTCACCATTGATATTCAGATTACATTACTTGAAGGACGTGCTAAAGTTGAGGAAAAGCCTGTTTATGATGATGAATCTCCCATAAAGGAAGAATCTACAGTGAACAAGTCCCTAGAAAAAGACATGGCTATGAACAATGATGAATTGAGGGAAACCATACATGAGATCAATAAGGATATTAAGTACATGCAACTTAAATCCTTGGCAAAATTAGGGAGCTATTATCAGCACATGTTGAAGAAGCCGTTCATCTCGATGAAGAATAATATCTATGCAAAGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

274

Amino Acids

32.29

Weight (kDa)

8.94

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015550)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26100 FvH4_7g24971
rosa_laevigata	RLG00000027002
rosa_multiflora	Rmu_ssc0000248.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286160 Rroxscaffold_7G00173300
rosa_rugosa	Rorug01G0360100
rosa_samantha	Rh1AG369800 Rh1BG333400 Rh1CG346800 Rh1DG364600 Rh6AG357500 Rh6BG364400 Rh6CG371500 Rh6DG358300
rosa_wichuraiana	Rw6G031170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	381
AciI	CCGC	1 cut(s)	379
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	2 cut(s)	5, 536
AfaI	GTAC	2 cut(s)	97, 722
AfiI	CCNNNNNNNGG	1 cut(s)	277
AflII	CTTAAG	1 cut(s)	305
AflIII	ACRYGT	1 cut(s)	768
AgsI	TTSAA	8 cut(s)	125, 182, 218, 227, 317, 527, 569, 775
AjiI	CACGTC	1 cut(s)	575
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	8 cut(s)	82, 283, 304, 343, 364, 416, 523, 756
AluI	AGCT	8 cut(s)	82, 283, 304, 343, 364, 416, 523, 756
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	3 cut(s)	180, 216, 416
AlwI	GGATC	1 cut(s)	242
AlwNI	CAGNNNCTG	1 cut(s)	98
ApeKI	GCWGC	3 cut(s)	410, 413, 416
ApoI	RAATTY	2 cut(s)	5, 536
Asp700I	GAANNNNTTC	1 cut(s)	782
AspS9I	GGNCC	1 cut(s)	376
AsuHPI	GGTGA	1 cut(s)	532
AvaII	GGWCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	84
BauI	CACGAG	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	3 cut(s)	397, 403, 425
BccI	CCATC	1 cut(s)	279
BceAI	ACGGC	2 cut(s)	455, 766
BciT130I	CCWGG	1 cut(s)	240
BciVI	GTATCC	1 cut(s)	41
BcoDI	GTCTC	3 cut(s)	180, 216, 416
BfaI	CTAG	3 cut(s)	45, 111, 650
BfmI	CTRYAG	3 cut(s)	411, 417, 633
BfrI	CTTAAG	1 cut(s)	305
BfuI	GTATCC	1 cut(s)	41
BisI	GCNGC	3 cut(s)	411, 414, 417
BlsI	GCNGC	3 cut(s)	412, 415, 418
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	376
BmgBI	CACGTC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	376
BmrFI	CCNGG	1 cut(s)	240
BpuEI	CTTGAG	2 cut(s)	365, 386
Bsa29I	ATCGAT	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	738
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	240
BseCI	ATCGAT	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	738
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseXI	GCAGC	3 cut(s)	397, 403, 425
Bsh1236I	CGCG	1 cut(s)	381
BshVI	ATCGAT	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	631
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	3 cut(s)	180, 216, 416
BsmFI	GGGAC	1 cut(s)	631
Bso31I	GGTCTC	1 cut(s)	416
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	3 cut(s)	138, 247, 702
BspACI	CCGC	1 cut(s)	379
BspDI	ATCGAT	1 cut(s)	141
BspFNI	CGCG	1 cut(s)	381
BspMAI	CTGCAG	2 cut(s)	415, 421
BspPI	GGATC	1 cut(s)	242
BspTI	CTTAAG	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	416
BssECI	CCNNGG	1 cut(s)	738
BssMI	GATC	3 cut(s)	138, 247, 702
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	738
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	3 cut(s)	100, 405, 637
Bst6I	CTCTTC	2 cut(s)	183, 321
BstAFI	CTTAAG	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	483
BstFNI	CGCG	1 cut(s)	381
BstKTI	GATC	3 cut(s)	141, 250, 705
BstMAI	GTCTC	3 cut(s)	180, 216, 416
BstMBI	GATC	3 cut(s)	138, 247, 702
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	3 cut(s)	211, 727, 772
BstSCI	CCNGG	1 cut(s)	238
BstSFI	CTRYAG	3 cut(s)	411, 417, 633
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	3 cut(s)	397, 403, 425
Bsu15I	ATCGAT	1 cut(s)	141
BsuI	GTATCC	1 cut(s)	41
BsuTUI	ATCGAT	1 cut(s)	141
BtrI	CACGTC	1 cut(s)	575
BtsIMutI	CAGTG	1 cut(s)	642
Cac8I	GCNNGC	1 cut(s)	205
CaiI	CAGNNNCTG	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	376
ClaI	ATCGAT	1 cut(s)	141
Csp6I	GTAC	2 cut(s)	96, 721
CviAII	CATG	5 cut(s)	208, 661, 698, 724, 769
CviQI	GTAC	2 cut(s)	96, 721
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	3 cut(s)	140, 249, 704
DpnII	GATC	3 cut(s)	138, 247, 702
Eam1104I	CTCTTC	2 cut(s)	183, 321
EarI	CTCTTC	2 cut(s)	183, 321
Ecl136II	GAGCTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	738
Eco24I	GRGCYC	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	416
Eco47I	GGWCC	1 cut(s)	376
Eco53kI	GAGCTC	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	536
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	738
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	738
FaeI	CATG	5 cut(s)	211, 664, 701, 727, 772
FaqI	GGGAC	1 cut(s)	631
FatI	CATG	5 cut(s)	207, 660, 697, 723, 768
Fnu4HI	GCNGC	3 cut(s)	411, 414, 417
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	3 cut(s)	411, 414, 417
FspBI	CTAG	3 cut(s)	45, 111, 650
GluI	GCNGC	3 cut(s)	411, 414, 417
Hin1II	CATG	5 cut(s)	211, 664, 701, 727, 772
HindIII	AAGCTT	2 cut(s)	341, 521
HinfI	GANTC	5 cut(s)	48, 89, 243, 611, 629
HphI	GGTGA	1 cut(s)	532
Hpy166II	GTNNAC	1 cut(s)	640
Hpy188I	TCNGA	1 cut(s)	555
Hpy188III	TCNNGA	3 cut(s)	59, 215, 790
Hpy8I	GTNNAC	1 cut(s)	640
HpyAV	CCTTC	4 cut(s)	119, 367, 424, 563
HpyCH4III	ACNGT	3 cut(s)	100, 405, 637
HpyCH4IV	ACGT	1 cut(s)	574
HpyCH4V	TGCA	5 cut(s)	413, 419, 475, 727, 812
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	1 cut(s)	574
Hsp92II	CATG	5 cut(s)	211, 664, 701, 727, 772
Kzo9I	GATC	3 cut(s)	138, 247, 702
LmnI	GCTCC	2 cut(s)	280, 753
LpnPI	CCDG	5 cut(s)	72, 78, 225, 252, 609
Lsp1109I	GCAGC	3 cut(s)	397, 403, 425
MaeI	CTAG	3 cut(s)	45, 111, 650
MaeII	ACGT	1 cut(s)	574
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	3 cut(s)	140, 249, 704
MboI	GATC	3 cut(s)	138, 247, 702
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	6 cut(s)	5, 320, 528, 536, 680, 746
MnlI	CCTC	2 cut(s)	580, 678
MroXI	GAANNNNTTC	1 cut(s)	782
MseI	TTAA	3 cut(s)	306, 717, 732
MslI	CAYNNNNRTG	2 cut(s)	665, 791
MspA1I	CMGCKG	1 cut(s)	416
MspCI	CTTAAG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeII	GATC	3 cut(s)	138, 247, 702
NlaIII	CATG	5 cut(s)	211, 664, 701, 727, 772
NspI	RCATGY	3 cut(s)	211, 727, 772
PciI	ACATGT	1 cut(s)	768
PdmI	GAANNNNTTC	1 cut(s)	782
PfeI	GAWTC	5 cut(s)	48, 89, 243, 611, 629
PkrI	GCNGC	3 cut(s)	412, 415, 418
PscI	ACATGT	1 cut(s)	768
Psp124BI	GAGCTC	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	376
PstI	CTGCAG	2 cut(s)	415, 421
PstNI	CAGNNNCTG	1 cut(s)	98
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	2 cut(s)	97, 722
RsaNI	GTAC	2 cut(s)	96, 721
RseI	CAYNNNNRTG	2 cut(s)	665, 791
SacI	GAGCTC	1 cut(s)	84
SaqAI	TTAA	3 cut(s)	306, 717, 732
SatI	GCNGC	3 cut(s)	411, 414, 417
Sau3AI	GATC	3 cut(s)	138, 247, 702
Sau96I	GGNCC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	84
SfcI	CTRYAG	3 cut(s)	411, 417, 633
SinI	GGWCC	1 cut(s)	376
SmiMI	CAYNNNNRTG	2 cut(s)	665, 791
SmlI	CTYRAG	3 cut(s)	305, 344, 365
SmoI	CTYRAG	3 cut(s)	305, 344, 365
Sse9I	AATT	6 cut(s)	5, 320, 528, 536, 680, 746
SsiI	CCGC	1 cut(s)	379
SspMI	CTAG	3 cut(s)	45, 111, 650
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	738
TaaI	ACNGT	3 cut(s)	100, 405, 637
TaiI	ACGT	1 cut(s)	577
TaqI	TCGA	4 cut(s)	141, 246, 516, 791
TasI	AATT	6 cut(s)	5, 320, 528, 536, 680, 746
TatI	WGTACW	1 cut(s)	720
TfiI	GAWTC	5 cut(s)	48, 89, 243, 611, 629
Tru1I	TTAA	3 cut(s)	306, 717, 732
Tru9I	TTAA	3 cut(s)	306, 717, 732
TscAI	CASTG	1 cut(s)	642
TseI	GCWGC	3 cut(s)	410, 413, 416
TspDTI	ATGAA	7 cut(s)	17, 549, 624, 683, 693, 775, 809
TspGWI	ACGGA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	642
Vha464I	CTTAAG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	2 cut(s)	5, 536
XceI	RCATGY	3 cut(s)	211, 727, 772
XmnI	GAANNNNTTC	1 cut(s)	782
XspI	CTAG	3 cut(s)	45, 111, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.