Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0015550

Physical Location & Seq

Genomic Coordinates Reverse (-)

55188261 .. 55189333

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G031170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCTATCACAGCTTTTGAGAAGGATAAGCAGGAAGCCAATCCTCTCAAAGAATTAAATGAGACACTTCGCAGGCTTCAGAATCAGAAGCATAAGCTTGAGAAGAAGGTCTGTGCAAATTATTGGAAGGCTCAACGATTAAACGCAGCTGTAGAGATGTTGAGAGAATGTACAGAGAAGAAGGGACGCTTACAGAAGAAAATCGACAAGCTTATAAATTTCAGCTTTTGCATTGAGAATCAGATTACTTTACTGGAAGTACATGCTGATATTGGGAAAACACCTGTTTATGATGACTCACCAACAAAAGAATCTGCAATGAAATCTAAGGACATGGAAATGACAATGAACAATGATGAATTGAGGGAAATGATAGATGAGATCAATAAGGAAATTGAATACATGCAATTGAAATCCTCAGAAAAATTAAGGAGGCGTTGTCGGCACACATTGAACAAACCATTTGTTTCAATGAAGAATAATCTCTGCAAGTTATTTCAAGGTGATAAATCAGTTATGATATCATGGAGTAAGCCTGGTAAAGAAAACAAGACAGAAAACGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

188

Amino Acids

22.13

Weight (kDa)

9.18

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015550)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26100 FvH4_7g24971
rosa_laevigata	RLG00000027002
rosa_multiflora	Rmu_ssc0000248.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286160 Rroxscaffold_7G00173300
rosa_rugosa	Rorug01G0360100
rosa_samantha	Rh1AG369800 Rh1BG333400 Rh1CG346800 Rh1DG364600 Rh6AG357500 Rh6BG364400 Rh6CG371500 Rh6DG358300
rosa_wichuraiana	Rw6G031170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	215
AcsI	RAATTY	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	2 cut(s)	172, 261
AflIII	ACRYGT	1 cut(s)	561
AgsI	TTSAA	5 cut(s)	398, 412, 454, 471, 500
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	5 cut(s)	14, 97, 149, 211, 225
AluI	AGCT	5 cut(s)	14, 97, 149, 211, 225
Alw26I	GTCTC	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	217
AsuHPI	GGTGA	2 cut(s)	291, 515
BbvI	GCAGC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	537
BcoDI	GTCTC	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	150
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	537
BmrFI	CCNGG	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	119
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bse1I	ACTGG	1 cut(s)	258
Bse3DI	GCAATG	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	537
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	198
BsmAI	GTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	198
Bsp1407I	TGTACA	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	381
BspCNI	CTCAG	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	324
BsrGI	TGTACA	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	537
BstAUI	TGTACA	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	2 cut(s)	327, 418
BstKTI	GATC	1 cut(s)	384
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	1 cut(s)	442
BstNI	CCWGG	1 cut(s)	537
BstNSI	RCATGY	2 cut(s)	266, 406
BstSCI	CCNGG	1 cut(s)	535
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	158
Cac8I	GCNNGC	1 cut(s)	74
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	2 cut(s)	171, 260
CviAII	CATG	4 cut(s)	263, 334, 403, 525
CviJI	RGCY	9 cut(s)	14, 38, 76, 97, 131, 149, 211, 225, 535
CviKI_1	RGCY	9 cut(s)	14, 38, 76, 97, 131, 149, 211, 225, 535
CviQI	GTAC	2 cut(s)	171, 260
DdeI	CTNAG	2 cut(s)	327, 418
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
Eco32I	GATATC	1 cut(s)	522
Eco57I	CTGAAG	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	535
EcoRV	GATATC	1 cut(s)	522
FaeI	CATG	4 cut(s)	266, 337, 406, 528
FaiI	YATR	8 cut(s)	93, 215, 264, 291, 335, 404, 518, 526
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	4 cut(s)	262, 333, 402, 524
Fnu4HI	GCNGC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
HgaI	GACGC	1 cut(s)	195
Hin1II	CATG	4 cut(s)	266, 337, 406, 528
HindIII	AAGCTT	2 cut(s)	95, 209
HinfI	GANTC	4 cut(s)	82, 238, 296, 311
HphI	GGTGA	2 cut(s)	291, 515
Hpy188I	TCNGA	4 cut(s)	81, 87, 243, 421
HpyAV	CCTTC	4 cut(s)	16, 100, 121, 175
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	5 cut(s)	116, 231, 317, 406, 489
HpyF10VI	GCNNNNNNNGC	1 cut(s)	442
HpyF3I	CTNAG	2 cut(s)	327, 418
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	4 cut(s)	266, 337, 406, 528
Kzo9I	GATC	1 cut(s)	381
LpnPI	CCDG	6 cut(s)	17, 58, 239, 297, 522, 549
Lsp1109I	GCAGC	1 cut(s)	158
MaeII	ACGT	1 cut(s)	561
MalI	GATC	1 cut(s)	383
MboI	GATC	1 cut(s)	381
MboII	GAAGA	4 cut(s)	115, 190, 208, 487
MfeI	CAATTG	1 cut(s)	407
MluCI	AATT	7 cut(s)	53, 118, 217, 359, 393, 407, 425
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	4 cut(s)	54, 357, 426, 427
MseI	TTAA	3 cut(s)	56, 140, 428
MslI	CAYNNNNRTG	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	537
MunI	CAATTG	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	537
MwoI	GCNNNNNNNGC	1 cut(s)	442
NdeII	GATC	1 cut(s)	381
NlaIII	CATG	4 cut(s)	266, 337, 406, 528
NspI	RCATGY	2 cut(s)	266, 406
PfeI	GAWTC	3 cut(s)	82, 238, 311
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
PsiI	TTATAA	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	535
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	2 cut(s)	172, 261
RsaNI	GTAC	2 cut(s)	171, 260
RseI	CAYNNNNRTG	1 cut(s)	338
SaqAI	TTAA	3 cut(s)	56, 140, 428
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	381
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	537
SetI	ASST	9 cut(s)	16, 99, 111, 151, 213, 227, 286, 505, 564
SfcI	CTRYAG	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	7 cut(s)	53, 118, 217, 359, 393, 407, 425
StyD4I	CCNGG	1 cut(s)	535
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	1 cut(s)	204
TasI	AATT	7 cut(s)	53, 118, 217, 359, 393, 407, 425
TatI	WGTACW	2 cut(s)	170, 259
TfiI	GAWTC	3 cut(s)	82, 238, 311
Tru1I	TTAA	3 cut(s)	56, 140, 428
Tru9I	TTAA	3 cut(s)	56, 140, 428
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	4 cut(s)	335, 362, 372, 488
XapI	RAATTY	1 cut(s)	217
XceI	RCATGY	2 cut(s)	266, 406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.