FvH4_2g27200

disulfide-isomerase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
21641278 .. 21645547
4270 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g27200.t1

Sequence Viewer

Length: 1497 bp
ATGACGTCCTCTAGAGTTTTGCTCTGCTTCTCTTTGCTCGTCGCTCTCTGCTTCACCGCGATCCACGCCGACGAGGCTGATTCCAAGGAATTCGTCCTCACTCTCGACAGCTCCAACTTCTCTGACACTATCAGCAAGCACGACTTCGTCGTCGTCGAGTTCTACGCCCCATGGTGTGGCCACTGTAAGAAGCTCGCTCCAGAGTATGAAAAAGCTGCATCTATCTTGAGCAGTCTCGACCCACCAGTCATTCTTGCGAAAGTTGATGCAAATGAGGAAGCAAACAAAGGACTTGCTACTGATTATGATGTTAAGGGTTTCCCCACAATCAAGATTCTAAGAGATGGTGGGAAGATTATCCAGGAATACAAGGGTCCTCGTGAAGCCGATGGTATTGTTTCTTATTTAAAGAAACAAAGTGGTCCCGCTTCTGTTGAACTAAAGAGTGCCGATGATGCAACTACTCTTGTTGGTGAAAAGAAGATTGTTGTTGTCGGTGTGTTTGAGAAGTTCTCTGGAGACGAGTATGAGAAGTTCTTGTCTCTAGCTCAGAAATTGCGTTCAGATTATGAATTCGGTCACACTCTTGATGCAAAGCACCTACCCCGTGGTGATTCATCTGTGACTGGGCCAGTAGTTAGGCTGTTCAAGCCATTCGATGAACTTTTTGTTGATTTCAAGGAATTCAATGCAGAGGCTCTAGAGAAGTTTATTGAAGAATCTAGCTTGCCAGTTGTTACAGAATTCAACAATGACCCAGACAACCACCCTTTTGTGATCAAGTTCTTCAACGGTCAAAATGATAAGGCTATGTTGTTTCTGAACTTCAGCAGTGATGCTGCTGATGCTTTTAAATCAAAGTACCGTGAAGTTGCTGAGAAATACAAAGGAGAAGGCATAAGCTTTTTAGTTGGAGATCTAGAGGCTAGTCAAGGTGCCTTCCAGTACTTTGGACTTAAAGAAGACCAGGTGCCTCTGATCATCATACAGACCAATGACGGACAAAAGTTTTTGAAACCACATTTGGAGCCAGACCATATTTCTGTTTGGGTGAGGGAATACAAGGATGGGAAAGTACCAGCATACAAGAAATCTGAACCCATCCCTGAGAAGAACGATGAGCCTGTAAAAGTTATAGTCGCTGAGAGCCTGGAGGACATGGTTTCCAAGTCTGGGAAAAATGTGCTGCTTGAGTTTTATGCCCCATGGTGCGGACACTGCAAGAAGCTTGCACCAATCTTGGATGAAGTTGCTGTGCGCTTCGAAAAAGATCCTGAAGTTCTTATCGGAAAATATGATGCTACTGCAAATGATGTCCCAACTGAGTTTGATGTGAAATACTATCCAACTTTGTACTTCAAGACAGCAAGTGGAAAGCTATTGTCCTATGATGAGGATGACAGATCCAAGGAAAGCCTCATTGCTTTCATTGAAAAGAATAAGGACAAAGCTGAGACTAAAACTGAGAACCAGGAGTCCTCAAAAGATGAGCTCTAA

Protein Analysis

499

Amino Acids

55.85

Weight (kDa)

4.95

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 32 - 138 1.7e-28 Thioredoxin
Thioredoxin_2 PF13098 46 - 128 3.5e-07 Thioredoxin-like domain
Thioredoxin_6 PF13848 168 - 351 5e-25 Thioredoxin-like domain
Thioredoxin PF00085 376 - 479 3.3e-22 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011915)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 149, 245
AatII GACGTC 1 cut(s) 8
AccB1I GGYRCC 2 cut(s) 935, 970
AccB7I CCANNNNNTGG 1 cut(s) 176
AccII CGCG 1 cut(s) 59
AciI CCGC 3 cut(s) 57, 426, 1212
AclWI GGATC 3 cut(s) 55, 1265, 1398
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 4 cut(s) 89, 572, 683, 743
AcuI CTGAAG 2 cut(s) 811, 1296
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 863, 947, 1077, 1355
AfiI CCNNNNNNNGG 3 cut(s) 176, 1173, 1211
AjnI CCWGG 4 cut(s) 360, 966, 1149, 1470
AjuI GAANNNNNNNTTGG 2 cut(s) 1007, 1039
AloI GAACNNNNNNTCC 2 cut(s) 1460, 1492
Alw21I GWGCWC 1 cut(s) 1494
Alw26I GTCTC 4 cut(s) 239, 513, 546, 1448
AlwI GGATC 3 cut(s) 55, 1265, 1398
AoxI GGCC 2 cut(s) 178, 629
ApeKI GCWGC 3 cut(s) 215, 839, 1186
ApoI RAATTY 4 cut(s) 89, 572, 683, 743
AspLEI GCGC 1 cut(s) 1260
AspS9I GGNCC 3 cut(s) 374, 422, 629
AsuHPI GGTGA 4 cut(s) 46, 485, 623, 1063
AsuII TTCGAA 1 cut(s) 1263
AvaII GGWCC 2 cut(s) 374, 422
BalI TGGCCA 1 cut(s) 180
BanI GGYRCC 2 cut(s) 935, 970
BanII GRGCYC 1 cut(s) 1494
BauI CACGAG 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 969
Bbv12I GWGCWC 1 cut(s) 1494
BbvI GCAGC 3 cut(s) 202, 826, 1173
BccI CCATC 4 cut(s) 338, 383, 1061, 1109
BciT130I CCWGG 4 cut(s) 362, 968, 1151, 1472
BclI TGATCA 2 cut(s) 777, 978
BcoDI GTCTC 4 cut(s) 239, 513, 546, 1448
BfaI CTAG 6 cut(s) 12, 545, 701, 723, 920, 927
BglI GCCNNNNNGGC 1 cut(s) 74
BglII AGATCT 1 cut(s) 916
BisI GCNGC 3 cut(s) 216, 840, 1187
BlsI GCNGC 3 cut(s) 217, 841, 1188
BmcAI AGTACT 1 cut(s) 947
Bme1390I CCNGG 4 cut(s) 362, 968, 1151, 1472
Bme18I GGWCC 2 cut(s) 374, 422
BmgT120I GGNCC 3 cut(s) 374, 422, 629
BmiI GGNNCC 5 cut(s) 375, 424, 937, 972, 1029
BmrFI CCNGG 4 cut(s) 362, 968, 1151, 1472
BmrI ACTGGG 1 cut(s) 636
BmsI GCATC 7 cut(s) 227, 256, 445, 580, 826, 835, 1288
BmuI ACTGGG 1 cut(s) 636
BpiI GAAGAC 1 cut(s) 969
BplI GAGNNNNNCTC 3 cut(s) 38, 497, 529
BpmI CTGGAG 3 cut(s) 183, 537, 1172
Bpu14I TTCGAA 1 cut(s) 1263
BpuEI CTTGAG 2 cut(s) 247, 1211
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 5 cut(s) 84, 170, 607, 1205, 1407
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 1173, 1211
Bse1I ACTGG 5 cut(s) 245, 631, 632, 731, 943
Bse3DI GCAATG 1 cut(s) 1419
BseBI CCWGG 4 cut(s) 362, 968, 1151, 1472
BseDI CCNNGG 5 cut(s) 84, 170, 607, 1205, 1407
BseGI GGATG 4 cut(s) 1072, 1101, 1249, 1402
BseLI CCNNNNNNNGG 3 cut(s) 176, 1173, 1211
BseMI GCAATG 1 cut(s) 1419
BseMII CTCAG 7 cut(s) 563, 867, 1098, 1134, 1314, 1443, 1455
BseNI ACTGG 5 cut(s) 245, 631, 632, 731, 943
BseXI GCAGC 3 cut(s) 202, 826, 1173
Bsh1236I CGCG 1 cut(s) 59
BshFI GGCC 2 cut(s) 180, 631
BshNI GGYRCC 2 cut(s) 935, 970
BsiHKAI GWGCWC 1 cut(s) 1494
BslFI GGGAC 2 cut(s) 408, 1301
BslI CCNNNNNNNGG 3 cut(s) 176, 1173, 1211
BsmAI GTCTC 4 cut(s) 239, 513, 546, 1448
BsmBI CGTCTC 1 cut(s) 513
BsmFI GGGAC 2 cut(s) 408, 1301
BsnI GGCC 2 cut(s) 180, 631
Bsp119I TTCGAA 1 cut(s) 1263
Bsp1286I GDGCHC 1 cut(s) 1494
Bsp143I GATC 6 cut(s) 60, 777, 916, 978, 1270, 1403
Bsp19I CCATGG 2 cut(s) 170, 1205
BspACI CCGC 3 cut(s) 57, 426, 1212
BspANI GGCC 2 cut(s) 180, 631
BspCNI CTCAG 7 cut(s) 562, 868, 1099, 1135, 1315, 1444, 1456
BspFNI CGCG 1 cut(s) 59
BspLI GGNNCC 5 cut(s) 375, 424, 937, 972, 1029
BspPI GGATC 3 cut(s) 55, 1265, 1398
BspT104I TTCGAA 1 cut(s) 1263
BspT107I GGYRCC 2 cut(s) 935, 970
BsrDI GCAATG 1 cut(s) 1419
BsrI ACTGG 5 cut(s) 245, 631, 632, 731, 943
BssECI CCNNGG 5 cut(s) 84, 170, 607, 1205, 1407
BssMI GATC 6 cut(s) 60, 777, 916, 978, 1270, 1403
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 378
BssT1I CCWWGG 4 cut(s) 84, 170, 1205, 1407
Bst2BI CACGAG 1 cut(s) 378
Bst2UI CCWGG 4 cut(s) 362, 968, 1151, 1472
Bst4CI ACNGT 3 cut(s) 185, 794, 866
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 1263
BstC8I GCNNGC 4 cut(s) 137, 195, 728, 1230
BstDEI CTNAG 8 cut(s) 338, 549, 876, 1107, 1143, 1323, 1452, 1464
BstDSI CCRYGG 3 cut(s) 170, 607, 1205
BstF5I GGATG 4 cut(s) 1072, 1101, 1249, 1402
BstFNI CGCG 1 cut(s) 59
BstHHI GCGC 1 cut(s) 1260
BstKTI GATC 6 cut(s) 63, 780, 919, 981, 1273, 1406
BstMAI GTCTC 4 cut(s) 239, 513, 546, 1448
BstMBI GATC 6 cut(s) 60, 777, 916, 978, 1270, 1403
BstMWI GCNNNNNNNGC 6 cut(s) 65, 74, 455, 649, 845, 1218
BstNI CCWGG 4 cut(s) 362, 968, 1151, 1472
BstSCI CCNGG 4 cut(s) 360, 966, 1149, 1470
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 3 cut(s) 202, 826, 1173
BstV2I GAAGAC 1 cut(s) 969
BstX2I RGATCY 3 cut(s) 916, 1270, 1403
BstXI CCANNNNNNTGG 1 cut(s) 950
BstYI RGATCY 3 cut(s) 916, 1270, 1403
BsuRI GGCC 2 cut(s) 180, 631
BtgI CCRYGG 3 cut(s) 170, 607, 1205
BtsCI GGATG 4 cut(s) 1072, 1101, 1249, 1402
BtsI GCAGTG 2 cut(s) 838, 1216
BtsIMutI CAGTG 3 cut(s) 181, 838, 1216
Cac8I GCNNGC 4 cut(s) 137, 195, 728, 1230
CfoI GCGC 1 cut(s) 1260
Cfr13I GGNCC 3 cut(s) 374, 422, 629
CsiI ACCWGGT 1 cut(s) 966
Csp6I GTAC 4 cut(s) 862, 946, 1076, 1354
CviAII CATG 3 cut(s) 171, 1159, 1206
CviQI GTAC 4 cut(s) 862, 946, 1076, 1354
DdeI CTNAG 8 cut(s) 338, 549, 876, 1107, 1143, 1323, 1452, 1464
DpnI GATC 6 cut(s) 62, 779, 918, 980, 1272, 1405
DpnII GATC 6 cut(s) 60, 777, 916, 978, 1270, 1403
DraI TTTAAA 2 cut(s) 408, 853
DrdI GACNNNNNNGTC 2 cut(s) 149, 245
DseDI GACNNNNNNGTC 2 cut(s) 149, 245
EaeI YGGCCR 1 cut(s) 178
Ecl136II GAGCTC 1 cut(s) 1492
Eco130I CCWWGG 4 cut(s) 84, 170, 1205, 1407
Eco24I GRGCYC 1 cut(s) 1494
Eco47I GGWCC 2 cut(s) 374, 422
Eco53kI GAGCTC 1 cut(s) 1492
Eco57I CTGAAG 2 cut(s) 811, 1296
EcoICRI GAGCTC 1 cut(s) 1492
EcoO109I RGGNCCY 1 cut(s) 374
EcoRI GAATTC 4 cut(s) 89, 572, 683, 743
EcoRII CCWGG 4 cut(s) 360, 966, 1149, 1470
EcoT14I CCWWGG 4 cut(s) 84, 170, 1205, 1407
EcoT38I GRGCYC 1 cut(s) 1494
ErhI CCWWGG 4 cut(s) 84, 170, 1205, 1407
Esp3I CGTCTC 1 cut(s) 513
FaeI CATG 3 cut(s) 174, 1162, 1209
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 2 cut(s) 408, 1301
FatI CATG 3 cut(s) 170, 1158, 1205
FauI CCCGC 1 cut(s) 433
FbaI TGATCA 2 cut(s) 777, 978
Fnu4HI GCNGC 3 cut(s) 216, 840, 1187
FokI GGATG 4 cut(s) 1079, 1088, 1256, 1409
FriOI GRGCYC 1 cut(s) 1494
Fsp4HI GCNGC 3 cut(s) 216, 840, 1187
FspBI CTAG 6 cut(s) 12, 545, 701, 723, 920, 927
GlaI GCGC 1 cut(s) 1259
GluI GCNGC 3 cut(s) 216, 840, 1187
GsuI CTGGAG 3 cut(s) 183, 537, 1172
HaeIII GGCC 2 cut(s) 180, 631
HhaI GCGC 1 cut(s) 1260
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 174, 1162, 1209
Hin6I GCGC 1 cut(s) 1258
HinP1I GCGC 1 cut(s) 1258
HindIII AAGCTT 2 cut(s) 901, 1226
HinfI GANTC 5 cut(s) 80, 334, 614, 719, 1475
HphI GGTGA 4 cut(s) 46, 485, 623, 1063
Hpy188I TCNGA 7 cut(s) 124, 552, 565, 822, 978, 1096, 1289
Hpy99I CGWCG 5 cut(s) 44, 74, 152, 155, 158
HpyAV CCTTC 2 cut(s) 887, 949
HpyCH4III ACNGT 3 cut(s) 185, 794, 866
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 8 cut(s) 218, 269, 458, 593, 692, 1221, 1232, 1307
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 74, 455, 649, 845, 1218
HpyF3I CTNAG 8 cut(s) 338, 549, 876, 1107, 1143, 1323, 1452, 1464
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 174, 1162, 1209
HspAI GCGC 1 cut(s) 1258
Ksp22I TGATCA 2 cut(s) 777, 978
Kzo9I GATC 6 cut(s) 60, 777, 916, 978, 1270, 1403
LmnI GCTCC 3 cut(s) 116, 202, 1027
Lsp1109I GCAGC 3 cut(s) 202, 826, 1173
LweI GCATC 7 cut(s) 227, 256, 445, 580, 826, 835, 1288
MabI ACCWGGT 1 cut(s) 966
MaeI CTAG 6 cut(s) 12, 545, 701, 723, 920, 927
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 3 cut(s) 578, 622, 736
MalI GATC 6 cut(s) 62, 779, 918, 980, 1272, 1405
MboI GATC 6 cut(s) 60, 777, 916, 978, 1270, 1403
MboII GAAGA 6 cut(s) 364, 493, 728, 778, 974, 1123
MflI RGATCY 3 cut(s) 916, 1270, 1403
MhlI GDGCHC 1 cut(s) 1494
MlsI TGGCCA 1 cut(s) 180
MluCI AATT 5 cut(s) 89, 554, 572, 683, 743
MluNI TGGCCA 1 cut(s) 180
MlyI GAGTC 1 cut(s) 1484
MmeI TCCRAC 3 cut(s) 138, 892, 1370
Mox20I TGGCCA 1 cut(s) 180
MscI TGGCCA 1 cut(s) 180
MseI TTAA 4 cut(s) 312, 407, 852, 957
Msp20I TGGCCA 1 cut(s) 180
MspR9I CCNGG 4 cut(s) 362, 968, 1151, 1472
MvaI CCWGG 4 cut(s) 362, 968, 1151, 1472
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 6 cut(s) 65, 74, 455, 649, 845, 1218
NcoI CCATGG 2 cut(s) 170, 1205
NdeII GATC 6 cut(s) 60, 777, 916, 978, 1270, 1403
NlaIII CATG 3 cut(s) 174, 1162, 1209
NlaIV GGNNCC 5 cut(s) 375, 424, 937, 972, 1029
NmuCI GTSAC 2 cut(s) 578, 622
NspV TTCGAA 1 cut(s) 1263
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 153
PfeI GAWTC 4 cut(s) 80, 334, 614, 719
PflFI GACNNNGTC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 176
PfoI TCCNGGA 1 cut(s) 360
PkrI GCNGC 3 cut(s) 217, 841, 1188
PleI GAGTC 1 cut(s) 1483
PpsI GAGTC 1 cut(s) 1483
PpuMI RGGWCCY 1 cut(s) 374
Psp124BI GAGCTC 1 cut(s) 1494
Psp5II RGGWCCY 1 cut(s) 374
Psp6I CCWGG 4 cut(s) 360, 966, 1149, 1470
PspGI CCWGG 4 cut(s) 360, 966, 1149, 1470
PspN4I GGNNCC 5 cut(s) 375, 424, 937, 972, 1029
PspPI GGNCC 3 cut(s) 374, 422, 629
PspPPI RGGWCCY 1 cut(s) 374
PsrI GAACNNNNNNTAC 2 cut(s) 518, 550
PsuI RGATCY 3 cut(s) 916, 1270, 1403
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 4 cut(s) 863, 947, 1077, 1355
RsaNI GTAC 4 cut(s) 862, 946, 1076, 1354
SacI GAGCTC 1 cut(s) 1494
SaqAI TTAA 4 cut(s) 312, 407, 852, 957
SatI GCNGC 3 cut(s) 216, 840, 1187
Sau3AI GATC 6 cut(s) 60, 777, 916, 978, 1270, 1403
Sau96I GGNCC 3 cut(s) 374, 422, 629
ScaI AGTACT 1 cut(s) 947
SchI GAGTC 1 cut(s) 1484
ScrFI CCNGG 4 cut(s) 362, 968, 1151, 1472
SduI GDGCHC 1 cut(s) 1494
SexAI ACCWGGT 1 cut(s) 966
SfaNI GCATC 7 cut(s) 227, 256, 445, 580, 826, 835, 1288
SfuI TTCGAA 1 cut(s) 1263
SinI GGWCC 2 cut(s) 374, 422
SmlI CTYRAG 2 cut(s) 226, 1190
SmoI CTYRAG 2 cut(s) 226, 1190
Sse9I AATT 5 cut(s) 89, 554, 572, 683, 743
SsiI CCGC 3 cut(s) 57, 426, 1212
SspMI CTAG 6 cut(s) 12, 545, 701, 723, 920, 927
SstI GAGCTC 1 cut(s) 1494
StyD4I CCNGG 4 cut(s) 360, 966, 1149, 1470
StyI CCWWGG 4 cut(s) 84, 170, 1205, 1407
TaaI ACNGT 3 cut(s) 185, 794, 866
TaiI ACGT 1 cut(s) 8
TaqI TCGA 5 cut(s) 105, 156, 237, 657, 1263
TaqII GACCGA 1 cut(s) 566
TasI AATT 5 cut(s) 89, 554, 572, 683, 743
TatI WGTACW 2 cut(s) 945, 1353
TfiI GAWTC 4 cut(s) 80, 334, 614, 719
Tru1I TTAA 4 cut(s) 312, 407, 852, 957
Tru9I TTAA 4 cut(s) 312, 407, 852, 957
TscAI CASTG 3 cut(s) 188, 838, 1223
TseFI GTSAC 2 cut(s) 578, 622
TseI GCWGC 3 cut(s) 215, 839, 1186
Tsp45I GTSAC 2 cut(s) 578, 622
TspDTI ATGAA 6 cut(s) 222, 585, 606, 675, 1260, 1417
TspGWI ACGGA 1 cut(s) 1014
TspRI CASTG 3 cut(s) 188, 838, 1223
Tth111I GACNNNGTC 1 cut(s) 146
Van91I CCANNNNNTGG 1 cut(s) 176
VpaK11BI GGWCC 2 cut(s) 374, 422
XapI RAATTY 4 cut(s) 89, 572, 683, 743
XbaI TCTAGA 3 cut(s) 11, 700, 919
XspI CTAG 6 cut(s) 12, 545, 701, 723, 920, 927
ZraI GACGTC 1 cut(s) 6
ZrmI AGTACT 1 cut(s) 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.