RchiOBHm_Chr6g0296111

disulfide-isomerase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
57873534 .. 57877702
4169 bp
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UTR
Exon/CDS
Intron
PRQ26577

Sequence Viewer

Length: 1497 bp
ATGGCGTCCTCTAGGGTTTTGCTCTGCTTCTCCTTGCTCGTCGCTCTGTGCTTCACTGCGATCCACGCCGACGAGGCTGATTCGAAGGAGTTCGTGCTCACTTTGGACAGCTCCAACTTCTCTGACACTGTCAGCAAGCACGACTTCGTCGTTGTCGAGTTCTACGCCCCATGGTGTGGCCACTGCAAGAAGCTGGTTCCAGAGTATGAAAAAGCTGCATCTATCTTGAGCAGTAATGACCCACCAGTCATTCTAGCAAAAGTTGATGCAAATGAGGAAGCAAACAAAGGACTTGCTTCTGAATATGATGTTAAGGGTTTCCCCACAATCAAAATTCTAAGAAATGGTGGGAAGATTATCCAGGAATACAAGGGTCCTCGTGAAGCCGATGGTATTGTTACTTATTTGAAGAAACAAAGTGGTCCAGCTTCTGTTGAAATAAAGAGTGCTGATGATGCAACTACTGTTATTGGTGAAAAGAAGATAGTTGTTGTTGGTGTGTTTGACAAGTTCTCTGGAGAGGAGTATGAGAAATTCTTGGCTCTAGCTCAGAAATTGCGTTCAGATTATGAATTTGGTCACACTCTTGATGCAAAGCACCTACCCCGTGGTGATTCATCTGTGACTGGGCCAGTAGTTAGACTGTTCAAGCCATTTGATGAACTTTTTGCTGATTTCAAGGAATTCAATGTAGAGGCTCTAGAGAAGTTCATTGAAGAATCTAGCTCGCCAGCTGTTACAGAATTCAACAATGACCCAGACAACCACCCTTTTGTTATCAAGTTCTTCAATGGTCCAAATGATAAGGCTATGTTGTTTCTGAACTTCAGCAGTGATGTTGCTGATGCTTTTAAATCAAAGTATCGTGAAGTAGCTGAGAAATACAAAGGAGAAGGCATAAGCTTTTTAGTTGGAGATGTAGAGGCTAGTCAAGGTGCCTTCCAGTACTTTGGACTTAAAGAAGACCAAGTGCCTCTCATCATCATACAGACCAATGACGGACAAAAGTTTTTGAAACCACATTTGGAGCCAGATCATATTTCAGTTTGGGTGAAGGAATACAAGGATGGGAAAGTATCACCATACAAGAAGTCTGAACCCATCCCTGAGAAGAACGATGACCCTGTTAAAGTTGTAGTCGCTGAGAGCCTCCAGGACATTGTTTTCAAGTCTGGGAAAAATGTGCTGCTCGAGTTTTATGCTCCATGGTGCGGACACTGCAAGAAGCTTGCACCAATCTTGGATGAAGTTGCTGCATCATTTGAAAAGGATCCTGAAGTTGTTATTGCAAAGTTTGATGCTACTGCAAATGATGTCCCAAGTGAGTTCGATGTGAAATACTATCCCACTTTGTACTTCAGGACAGCAAGTGGAAAGCTCTTGTCCTATGATGATGAGGACAGGTCCAAGGAAAGCCTCATTGCTTTCATCGAAAAGAATCGGGACAAATCTGAGACTAAAACTGAGAACCAAGAGTCCTCAAAAGATGAGCTCTAA

Protein Analysis

498

Amino Acids

55.71

Weight (kDa)

4.97

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 32 - 138 5.4e-28 Thioredoxin
Thioredoxin_2 PF13098 47 - 127 1.2e-06 Thioredoxin-like domain
Thioredoxin_6 PF13848 168 - 352 3.1e-24 Thioredoxin-like domain
Thioredoxin PF00085 376 - 479 2.6e-23 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011915)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 935
AccB7I CCANNNNNTGG 1 cut(s) 176
AciI CCGC 1 cut(s) 1212
AclWI GGATC 3 cut(s) 55, 1265, 1278
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 5 cut(s) 333, 533, 572, 683, 743
AcuI CTGAAG 3 cut(s) 811, 1296, 1342
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 947, 1355
AfiI CCNNNNNNNGG 2 cut(s) 176, 1211
AjnI CCWGG 2 cut(s) 360, 1152
AjuI GAANNNNNNNTTGG 2 cut(s) 1007, 1039
AloI GAACNNNNNNTCC 2 cut(s) 1460, 1492
Alw21I GWGCWC 2 cut(s) 99, 1494
Alw26I GTCTC 1 cut(s) 1448
AlwI GGATC 3 cut(s) 55, 1265, 1278
AlwNI CAGNNNCTG 1 cut(s) 431
Ama87I CYCGRG 1 cut(s) 1190
AoxI GGCC 2 cut(s) 178, 629
ApeKI GCWGC 3 cut(s) 215, 1186, 1253
ApoI RAATTY 5 cut(s) 333, 533, 572, 683, 743
Asp700I GAANNNNTTC 1 cut(s) 89
AspS9I GGNCC 5 cut(s) 374, 422, 629, 794, 1404
AsuHPI GGTGA 4 cut(s) 485, 623, 1063, 1071
AsuII TTCGAA 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 1190
AvaII GGWCC 4 cut(s) 374, 422, 794, 1404
BalI TGGCCA 1 cut(s) 180
BamHI GGATCC 1 cut(s) 1270
BanI GGYRCC 1 cut(s) 935
BanII GRGCYC 1 cut(s) 1494
BauI CACGAG 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 969
Bbv12I GWGCWC 2 cut(s) 99, 1494
BbvI GCAGC 3 cut(s) 202, 1173, 1240
BccI CCATC 3 cut(s) 383, 1061, 1109
BcgI CGANNNNNNTGC 2 cut(s) 1181, 1215
BciT130I CCWGG 2 cut(s) 362, 1154
BcoDI GTCTC 1 cut(s) 1448
BfaI CTAG 6 cut(s) 12, 254, 545, 701, 723, 927
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 3 cut(s) 216, 1187, 1254
BlsI GCNGC 3 cut(s) 217, 1188, 1255
BmcAI AGTACT 1 cut(s) 947
Bme1390I CCNGG 2 cut(s) 362, 1154
Bme18I GGWCC 4 cut(s) 374, 422, 794, 1404
BmeT110I CYCGRG 1 cut(s) 1190
BmgT120I GGNCC 5 cut(s) 374, 422, 629, 794, 1404
BmiI GGNNCC 5 cut(s) 198, 375, 937, 1029, 1272
BmrFI CCNGG 2 cut(s) 362, 1154
BmrI ACTGGG 1 cut(s) 636
BmsI GCATC 7 cut(s) 227, 256, 445, 580, 835, 1265, 1288
BmuI ACTGGG 1 cut(s) 636
BpiI GAAGAC 1 cut(s) 969
BpmI CTGGAG 2 cut(s) 537, 1136
Bpu14I TTCGAA 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 170, 607, 1205, 1407
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 1211
Bse1I ACTGG 4 cut(s) 245, 631, 632, 943
Bse3DI GCAATG 1 cut(s) 1419
BseBI CCWGG 2 cut(s) 362, 1154
BseDI CCNNGG 4 cut(s) 170, 607, 1205, 1407
BseGI GGATG 3 cut(s) 1072, 1101, 1249
BseLI CCNNNNNNNGG 2 cut(s) 176, 1211
BseMI GCAATG 1 cut(s) 1419
BseMII CTCAG 6 cut(s) 563, 867, 1098, 1134, 1443, 1455
BseNI ACTGG 4 cut(s) 245, 631, 632, 943
BseRI GAGGAG 1 cut(s) 536
BseXI GCAGC 3 cut(s) 202, 1173, 1240
BshFI GGCC 2 cut(s) 180, 631
BshNI GGYRCC 1 cut(s) 935
BsiHKAI GWGCWC 2 cut(s) 99, 1494
BsiHKCI CYCGRG 1 cut(s) 1190
BslFI GGGAC 2 cut(s) 1301, 1457
BslI CCNNNNNNNGG 2 cut(s) 176, 1211
BsmAI GTCTC 1 cut(s) 1448
BsmFI GGGAC 2 cut(s) 1301, 1457
BsnI GGCC 2 cut(s) 180, 631
BsoBI CYCGRG 1 cut(s) 1190
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 99, 1494
Bsp143I GATC 3 cut(s) 60, 1033, 1270
Bsp19I CCATGG 2 cut(s) 170, 1205
BspACI CCGC 1 cut(s) 1212
BspANI GGCC 2 cut(s) 180, 631
BspCNI CTCAG 6 cut(s) 562, 868, 1099, 1135, 1444, 1456
BspLI GGNNCC 5 cut(s) 198, 375, 937, 1029, 1272
BspPI GGATC 3 cut(s) 55, 1265, 1278
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 935
BsrDI GCAATG 1 cut(s) 1419
BsrI ACTGG 4 cut(s) 245, 631, 632, 943
BssECI CCNNGG 4 cut(s) 170, 607, 1205, 1407
BssMI GATC 3 cut(s) 60, 1033, 1270
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 378
BssT1I CCWWGG 3 cut(s) 170, 1205, 1407
Bst2BI CACGAG 1 cut(s) 378
Bst2UI CCWGG 2 cut(s) 362, 1154
Bst4CI ACNGT 3 cut(s) 130, 466, 645
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 4 cut(s) 137, 728, 732, 1230
BstDEI CTNAG 7 cut(s) 338, 549, 876, 1107, 1143, 1452, 1464
BstDSI CCRYGG 3 cut(s) 170, 607, 1205
BstF5I GGATG 3 cut(s) 1072, 1101, 1249
BstKTI GATC 3 cut(s) 63, 1036, 1273
BstMAI GTCTC 1 cut(s) 1448
BstMBI GATC 3 cut(s) 60, 1033, 1270
BstMWI GCNNNNNNNGC 4 cut(s) 65, 74, 455, 1218
BstNI CCWGG 2 cut(s) 362, 1154
BstSCI CCNGG 2 cut(s) 360, 1152
BstV1I GCAGC 3 cut(s) 202, 1173, 1240
BstV2I GAAGAC 1 cut(s) 969
BstX2I RGATCY 1 cut(s) 1270
BstXI CCANNNNNNTGG 1 cut(s) 950
BstYI RGATCY 1 cut(s) 1270
BsuRI GGCC 2 cut(s) 180, 631
BtgI CCRYGG 3 cut(s) 170, 607, 1205
BtsCI GGATG 3 cut(s) 1072, 1101, 1249
BtsI GCAGTG 4 cut(s) 54, 181, 838, 1216
BtsIMutI CAGTG 5 cut(s) 54, 126, 181, 838, 1216
Cac8I GCNNGC 4 cut(s) 137, 728, 732, 1230
CaiI CAGNNNCTG 1 cut(s) 431
Cfr13I GGNCC 5 cut(s) 374, 422, 629, 794, 1404
Csp6I GTAC 2 cut(s) 946, 1354
CviAII CATG 2 cut(s) 171, 1206
CviQI GTAC 2 cut(s) 946, 1354
DdeI CTNAG 7 cut(s) 338, 549, 876, 1107, 1143, 1452, 1464
DpnI GATC 3 cut(s) 62, 1035, 1272
DpnII GATC 3 cut(s) 60, 1033, 1270
DraI TTTAAA 1 cut(s) 853
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 178
Ecl136II GAGCTC 1 cut(s) 1492
Eco130I CCWWGG 3 cut(s) 170, 1205, 1407
Eco24I GRGCYC 1 cut(s) 1494
Eco47I GGWCC 4 cut(s) 374, 422, 794, 1404
Eco53kI GAGCTC 1 cut(s) 1492
Eco57I CTGAAG 3 cut(s) 811, 1296, 1342
Eco88I CYCGRG 1 cut(s) 1190
EcoICRI GAGCTC 1 cut(s) 1492
EcoO109I RGGNCCY 1 cut(s) 374
EcoRI GAATTC 2 cut(s) 683, 743
EcoRII CCWGG 2 cut(s) 360, 1152
EcoT14I CCWWGG 3 cut(s) 170, 1205, 1407
EcoT38I GRGCYC 1 cut(s) 1494
ErhI CCWWGG 3 cut(s) 170, 1205, 1407
FaeI CATG 2 cut(s) 174, 1209
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 2 cut(s) 1301, 1457
FatI CATG 2 cut(s) 170, 1205
Fnu4HI GCNGC 3 cut(s) 216, 1187, 1254
FokI GGATG 3 cut(s) 1079, 1088, 1256
FriOI GRGCYC 1 cut(s) 1494
Fsp4HI GCNGC 3 cut(s) 216, 1187, 1254
FspBI CTAG 6 cut(s) 12, 254, 545, 701, 723, 927
GluI GCNGC 3 cut(s) 216, 1187, 1254
GsuI CTGGAG 2 cut(s) 537, 1136
HaeIII GGCC 2 cut(s) 180, 631
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 174, 1209
HindIII AAGCTT 2 cut(s) 901, 1226
HinfI GANTC 5 cut(s) 80, 614, 719, 1438, 1475
HphI GGTGA 4 cut(s) 485, 623, 1063, 1071
Hpy188I TCNGA 7 cut(s) 124, 301, 552, 565, 822, 1096, 1453
Hpy99I CGWCG 3 cut(s) 44, 74, 152
HpyAV CCTTC 4 cut(s) 79, 887, 949, 1048
HpyCH4III ACNGT 3 cut(s) 130, 466, 645
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 74, 455, 1218
HpyF3I CTNAG 7 cut(s) 338, 549, 876, 1107, 1143, 1452, 1464
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 174, 1209
Kzo9I GATC 3 cut(s) 60, 1033, 1270
LmnI GCTCC 3 cut(s) 116, 1027, 1207
Lsp1109I GCAGC 3 cut(s) 202, 1173, 1240
LweI GCATC 7 cut(s) 227, 256, 445, 580, 835, 1265, 1288
MaeI CTAG 6 cut(s) 12, 254, 545, 701, 723, 927
MaeIII GTNAC 4 cut(s) 397, 578, 622, 736
MalI GATC 3 cut(s) 62, 1035, 1272
MboI GATC 3 cut(s) 60, 1033, 1270
MboII GAAGA 7 cut(s) 364, 421, 493, 728, 778, 974, 1123
MflI RGATCY 1 cut(s) 1270
MhlI GDGCHC 2 cut(s) 99, 1494
MlsI TGGCCA 1 cut(s) 180
MluCI AATT 6 cut(s) 333, 533, 554, 572, 683, 743
MluNI TGGCCA 1 cut(s) 180
MlyI GAGTC 1 cut(s) 1484
MmeI TCCRAC 2 cut(s) 138, 892
Mox20I TGGCCA 1 cut(s) 180
MroXI GAANNNNTTC 1 cut(s) 89
MscI TGGCCA 1 cut(s) 180
MseI TTAA 4 cut(s) 312, 852, 957, 1128
Msp20I TGGCCA 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 734
MspR9I CCNGG 2 cut(s) 362, 1154
MvaI CCWGG 2 cut(s) 362, 1154
MwoI GCNNNNNNNGC 4 cut(s) 65, 74, 455, 1218
NcoI CCATGG 2 cut(s) 170, 1205
NdeII GATC 3 cut(s) 60, 1033, 1270
NlaIII CATG 2 cut(s) 174, 1209
NlaIV GGNNCC 5 cut(s) 198, 375, 937, 1029, 1272
NmuCI GTSAC 2 cut(s) 578, 622
NspV TTCGAA 1 cut(s) 83
PaeR7I CTCGAG 1 cut(s) 1190
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 153
PdmI GAANNNNTTC 1 cut(s) 89
PfeI GAWTC 4 cut(s) 80, 614, 719, 1438
PflFI GACNNNGTC 2 cut(s) 128, 146
PflMI CCANNNNNTGG 1 cut(s) 176
PfoI TCCNGGA 2 cut(s) 360, 1152
PkrI GCNGC 3 cut(s) 217, 1188, 1255
PleI GAGTC 1 cut(s) 1483
PpsI GAGTC 1 cut(s) 1483
PpuMI RGGWCCY 1 cut(s) 374
Psp124BI GAGCTC 1 cut(s) 1494
Psp5II RGGWCCY 1 cut(s) 374
Psp6I CCWGG 2 cut(s) 360, 1152
PspGI CCWGG 2 cut(s) 360, 1152
PspN4I GGNNCC 5 cut(s) 198, 375, 937, 1029, 1272
PspPI GGNCC 5 cut(s) 374, 422, 629, 794, 1404
PspPPI RGGWCCY 1 cut(s) 374
PspXI VCTCGAGB 1 cut(s) 1190
PstNI CAGNNNCTG 1 cut(s) 431
PsuI RGATCY 1 cut(s) 1270
PsyI GACNNNGTC 2 cut(s) 128, 146
PvuII CAGCTG 1 cut(s) 734
RsaI GTAC 2 cut(s) 947, 1355
RsaNI GTAC 2 cut(s) 946, 1354
SacI GAGCTC 1 cut(s) 1494
SaqAI TTAA 4 cut(s) 312, 852, 957, 1128
SatI GCNGC 3 cut(s) 216, 1187, 1254
Sau3AI GATC 3 cut(s) 60, 1033, 1270
Sau96I GGNCC 5 cut(s) 374, 422, 629, 794, 1404
ScaI AGTACT 1 cut(s) 947
SchI GAGTC 1 cut(s) 1484
ScrFI CCNGG 2 cut(s) 362, 1154
SduI GDGCHC 2 cut(s) 99, 1494
SfaNI GCATC 7 cut(s) 227, 256, 445, 580, 835, 1265, 1288
Sfr274I CTCGAG 1 cut(s) 1190
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 4 cut(s) 374, 422, 794, 1404
SlaI CTCGAG 1 cut(s) 1190
SmlI CTYRAG 2 cut(s) 226, 1190
SmoI CTYRAG 2 cut(s) 226, 1190
Sse9I AATT 6 cut(s) 333, 533, 554, 572, 683, 743
SsiI CCGC 1 cut(s) 1212
SspMI CTAG 6 cut(s) 12, 254, 545, 701, 723, 927
SstI GAGCTC 1 cut(s) 1494
StyD4I CCNGG 2 cut(s) 360, 1152
StyI CCWWGG 3 cut(s) 170, 1205, 1407
TaaI ACNGT 3 cut(s) 130, 466, 645
TaqI TCGA 5 cut(s) 83, 156, 1191, 1329, 1431
TasI AATT 6 cut(s) 333, 533, 554, 572, 683, 743
TatI WGTACW 2 cut(s) 945, 1353
TfiI GAWTC 4 cut(s) 80, 614, 719, 1438
Tru1I TTAA 4 cut(s) 312, 852, 957, 1128
Tru9I TTAA 4 cut(s) 312, 852, 957, 1128
TscAI CASTG 5 cut(s) 61, 133, 188, 838, 1223
TseFI GTSAC 2 cut(s) 578, 622
TseI GCWGC 3 cut(s) 215, 1186, 1253
Tsp45I GTSAC 2 cut(s) 578, 622
TspDTI ATGAA 7 cut(s) 222, 585, 606, 675, 700, 1260, 1417
TspGWI ACGGA 1 cut(s) 1014
TspRI CASTG 5 cut(s) 61, 133, 188, 838, 1223
Tth111I GACNNNGTC 2 cut(s) 128, 146
Van91I CCANNNNNTGG 1 cut(s) 176
VpaK11BI GGWCC 4 cut(s) 374, 422, 794, 1404
XapI RAATTY 5 cut(s) 333, 533, 572, 683, 743
XbaI TCTAGA 1 cut(s) 700
XhoI CTCGAG 1 cut(s) 1190
XmnI GAANNNNTTC 1 cut(s) 89
XspI CTAG 6 cut(s) 12, 254, 545, 701, 723, 927
ZrmI AGTACT 1 cut(s) 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.