Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011915

Physical Location & Seq

Genomic Coordinates Reverse (-)

17948220 .. 17955429

Gene Structure 7210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00178210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1683 bp

ATGGTCGTCGTGCTCCTACGCCGGGCAAACGACGTTGTTCAAGATGCCGGTGTGGAGAAACTCGACCGGACGGCCGAAGTGGGCGGAGGAGATGTTGAGGTCGAGGGAGAGATCTCCTCGGTCCAACGGTGCCGGGAAGTTGGTCTTGGCCTTGTTGCGGTGGAGAGACCTAACGGCGCGCGGTTTTGCTCTGCTTCTCTTTTTCTCGTCGCTCTGTGCTTCACTGCGATCCACGCCGACGAGGCTGATTCGAAGGAGTTCGTGCTCACTTTGGACAGCTCCAACTTCTCTGACACTGTCAGCAAGCACGACTTCGTCGTCGTCGAGTTCTACGCCCCATGGTGTGGCCACTGCAAGAAGCTGGCTCCAGAGTATGAAAAAGCTGCATCTATCTTGAGCAGTAATGACCCACCTGTCATTCTAGCGAAAGTTGATGCAAATGAGGAGGCAAACAAAGGACTTGCTTCTGAATATGATGTTAAGGGTTTCCCCACAATCAAAATTCTAAGAAATGGTGGGAAGATTATCCAGGAATACAAGGGTCCTCGTGAAGCCGATGGTATTGTTACTTATTTGAAGAAACAAAGTGGTCCAGCTTCTGTTGAAATAAAGAGTGCTGATGATGCAACTACTGTTATTGGTGAAAAGAAGATAGTTGTTGTTGGTGTGTTTGACAAGTTCTCCGGAGAGGAGTATGAGAAATTCTTGGCTCTAGCTCAGAAGTTGCGTTCAGATTATGAATTTGGTCACACTCTTGATGTAAAGCACCTACCCCGTGGTGATTCATCTGTGACTGGGCCAGTAGTTAGACTGTTCAAGCCATTTGATGAACTTTTTGTTGATTTCAAGGAATTCAATGTAGAGGCTCTAGAGAAGTTCATTGAAGAATCTAGCTTGCCAGTTATTACAGAATTCAACAATGACCCAGACAACCACCCTTTTGTTATCAAGTTCTTCAATGGTCCAAATGATAAGGCTATGTTGTTTCTGAACTTCAGCAGTGATGTTGCTGATGCTTTTAAATCAAAGTATCGTGAAGTAGCTGAGAAATACAAAGGAGAAGGCATAAGCTTTTTAGTTGGAGATCTAGAGGCTAGTCAAGGTGCCTTCCAGTACTTTGGACTTAAAGAAGACCAAGTGCCTCTCATCATCATACAGACCAATGACGGACAAAAGTTTTTGAAACCACATTTGGAGCCAGATCATATTTCAGTTTGGGTGAAGGAATACAAGGCGAGGCTTCTACTTCTGATGGGAAAGTATCACCATACAAAGAAGTCTGAACCCATCCCTGAGAAGAACGATGACCCTGTTAAAGTTGTAGTCGCTGAGAGCCTCCAGGACATTGTTTTCAAGTCTGGGAAAAATGTGCTGCTCGAGTTTTATGCTCCATGGTGTGGACACTGCAAGAAGCTTGCACCAATCTTGGATGAAGTTGCTGTATCATTTGAAAAGGATCCTGAAGTTGTTATTGCAAAGTTTGACGCTACTGCAAATGATGTCCCAAGTGAGTTCGATGTGAAATACTATCCCACTTTGTACTTCAGGACAGCAAGTGGAAAGCTCTTGTCCTATGATGAGGAGGACAGGTCCAAGGAAAGCCTCATTGCTTTCATCGAAAAGAATCGGGACAAATCTGAGACTAAAACTGAGAACCAAGAGTCCTCAAAAGATGAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000323 GO:0000325 GO:0000326 GO:0000327 GO:0003006 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005794 GO:0005886 GO:0006457 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010109 GO:0010154 GO:0010205 GO:0010941 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019222 GO:0022414 GO:0030312 GO:0031090 GO:0031323 GO:0031324 GO:0031974 GO:0032501 GO:0032502 GO:0033554 GO:0034975 GO:0034976 GO:0042221 GO:0042548 GO:0043067 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043467 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0071944 GO:0098588 GO:0098805 GO:0140096 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

560

Amino Acids

62.56

Weight (kDa)

5.03

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	88 - 194	8.6e-29	Thioredoxin
Thioredoxin_2	PF13098	103 - 183	5.5e-07	Thioredoxin-like domain
Thioredoxin_6	PF13848	224 - 408	7.6e-24	Thioredoxin-like domain
Thioredoxin	PF00085	438 - 541	5.5e-23	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21750 AT1G21750 AT1G77510
fragaria_vesca	FvH4_2g27200
malus_domestica	MD08G1161100.v1.1 MD15G1346200.v1.1
prunus_persica	Prupe.1G494100_v2.0.a1
pyrus_communis	pycom08g13850 pycom15g31030
rosa_chinensis	RchiOBHm_Chr6g0296111
rosa_laevigata	RLG00000011730
rosa_multiflora	Rmu_co8489943.1_g000001 Rmu_sc0003139.1_g000043
rosa_roxburghii	Rroxscaffold_7G00178210
rosa_rugosa	Rorug06G0257800
rosa_samantha	Rh6BG378100 Rh6CG383600 Rh6DG370600
rosa_wichuraiana	Rw6G032300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	317, 413
AccB1I	GGYRCC	2 cut(s)	129, 1103
AccB7I	CCANNNNNTGG	2 cut(s)	344, 1397
AccII	CGCG	2 cut(s)	179, 181
AccIII	TCCGGA	1 cut(s)	683
AciI	CCGC	3 cut(s)	84, 158, 181
AclWI	GGATC	3 cut(s)	223, 1451, 1464
AcoI	YGGCCR	2 cut(s)	72, 346
AcsI	RAATTY	5 cut(s)	501, 701, 740, 851, 911
AcuI	CTGAAG	3 cut(s)	979, 1482, 1528
AfaI	GTAC	2 cut(s)	1115, 1541
AfiI	CCNNNNNNNGG	4 cut(s)	22, 157, 344, 1397
AjnI	CCWGG	2 cut(s)	528, 1338
AjuI	GAANNNNNNNTTGG	4 cut(s)	129, 161, 1175, 1207
AloI	GAACNNNNNNTCC	2 cut(s)	1646, 1678
Alw21I	GWGCWC	3 cut(s)	15, 267, 1680
Alw26I	GTCTC	2 cut(s)	160, 1634
AlwI	GGATC	3 cut(s)	223, 1451, 1464
AlwNI	CAGNNNCTG	1 cut(s)	599
Ama87I	CYCGRG	1 cut(s)	1376
Aor13HI	TCCGGA	1 cut(s)	683
AoxI	GGCC	4 cut(s)	72, 148, 346, 797
ApeKI	GCWGC	2 cut(s)	383, 1372
ApoI	RAATTY	5 cut(s)	501, 701, 740, 851, 911
Asp700I	GAANNNNTTC	1 cut(s)	257
AspLEI	GCGC	2 cut(s)	179, 181
AspS9I	GGNCC	6 cut(s)	121, 542, 590, 797, 962, 1590
AsuC2I	CCSGG	2 cut(s)	23, 134
AsuHPI	GGTGA	4 cut(s)	653, 791, 1231, 1256
AsuII	TTCGAA	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	1376
AvaII	GGWCC	5 cut(s)	121, 542, 590, 962, 1590
BalI	TGGCCA	1 cut(s)	348
BamHI	GGATCC	1 cut(s)	1456
BanI	GGYRCC	2 cut(s)	129, 1103
BanII	GRGCYC	1 cut(s)	1680
BauI	CACGAG	1 cut(s)	546
BbsI	GAAGAC	1 cut(s)	1137
Bbv12I	GWGCWC	3 cut(s)	15, 267, 1680
BbvI	GCAGC	2 cut(s)	370, 1359
BccI	CCATC	3 cut(s)	551, 1246, 1295
BceAI	ACGGC	2 cut(s)	87, 190
BcgI	CGANNNNNNTGC	2 cut(s)	1367, 1401
BciT130I	CCWGG	2 cut(s)	530, 1340
BcnI	CCSGG	2 cut(s)	23, 134
BcoDI	GTCTC	2 cut(s)	160, 1634
BfaI	CTAG	6 cut(s)	422, 713, 869, 891, 1088, 1095
BglI	GCCNNNNNGGC	1 cut(s)	242
BglII	AGATCT	2 cut(s)	111, 1084
BisI	GCNGC	2 cut(s)	384, 1373
BlsI	GCNGC	2 cut(s)	385, 1374
BmcAI	AGTACT	1 cut(s)	1115
Bme1390I	CCNGG	4 cut(s)	23, 134, 530, 1340
Bme18I	GGWCC	5 cut(s)	121, 542, 590, 962, 1590
BmeT110I	CYCGRG	1 cut(s)	1376
BmgT120I	GGNCC	6 cut(s)	121, 542, 590, 797, 962, 1590
BmiI	GGNNCC	6 cut(s)	131, 366, 543, 1105, 1197, 1458
BmrFI	CCNGG	4 cut(s)	23, 134, 530, 1340
BmrI	ACTGGG	1 cut(s)	804
BmsI	GCATC	5 cut(s)	34, 395, 424, 613, 1003
BmuI	ACTGGG	1 cut(s)	804
BpiI	GAAGAC	1 cut(s)	1137
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
BpmI	CTGGAG	2 cut(s)	351, 1322
Bpu14I	TTCGAA	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	415
BpuMI	CCSGG	2 cut(s)	23, 134
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	5 cut(s)	117, 338, 775, 1391, 1593
BsaWI	WCCGGW	2 cut(s)	66, 683
BsaXI	ACNNNNNCTCC	6 cut(s)	78, 108, 665, 695, 1574, 1604
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 157, 344, 1397
Bse118I	RCCGGY	1 cut(s)	47
Bse1I	ACTGG	4 cut(s)	799, 800, 899, 1111
Bse3DI	GCAATG	1 cut(s)	1605
BseAI	TCCGGA	1 cut(s)	683
BseBI	CCWGG	2 cut(s)	530, 1340
BseDI	CCNNGG	5 cut(s)	117, 338, 775, 1391, 1593
BseGI	GGATG	2 cut(s)	1287, 1435
BseLI	CCNNNNNNNGG	4 cut(s)	22, 157, 344, 1397
BseMI	GCAATG	1 cut(s)	1605
BseMII	CTCAG	6 cut(s)	731, 1035, 1284, 1320, 1629, 1641
BseNI	ACTGG	4 cut(s)	799, 800, 899, 1111
BsePI	GCGCGC	1 cut(s)	177
BseRI	GAGGAG	5 cut(s)	102, 106, 458, 704, 1595
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	370, 1359
Bsh1236I	CGCG	2 cut(s)	179, 181
Bsh1285I	CGRYCG	2 cut(s)	67, 75
BshFI	GGCC	4 cut(s)	74, 150, 348, 799
BshNI	GGYRCC	2 cut(s)	129, 1103
BsiEI	CGRYCG	2 cut(s)	67, 75
BsiHKAI	GWGCWC	3 cut(s)	15, 267, 1680
BsiHKCI	CYCGRG	1 cut(s)	1376
BsiSI	CCGG	5 cut(s)	22, 48, 67, 133, 684
BslFI	GGGAC	2 cut(s)	1487, 1643
BslI	CCNNNNNNNGG	4 cut(s)	22, 157, 344, 1397
BsmAI	GTCTC	2 cut(s)	160, 1634
BsmFI	GGGAC	2 cut(s)	1487, 1643
BsnI	GGCC	4 cut(s)	74, 150, 348, 799
Bso31I	GGTCTC	1 cut(s)	160
BsoBI	CYCGRG	1 cut(s)	1376
Bsp119I	TTCGAA	1 cut(s)	251
Bsp1286I	GDGCHC	3 cut(s)	15, 267, 1680
Bsp13I	TCCGGA	1 cut(s)	683
Bsp143I	GATC	5 cut(s)	111, 228, 1084, 1201, 1456
Bsp19I	CCATGG	2 cut(s)	338, 1391
BspACI	CCGC	3 cut(s)	84, 158, 181
BspANI	GGCC	4 cut(s)	74, 150, 348, 799
BspCNI	CTCAG	6 cut(s)	730, 1036, 1285, 1321, 1630, 1642
BspEI	TCCGGA	1 cut(s)	683
BspFNI	CGCG	2 cut(s)	179, 181
BspLI	GGNNCC	6 cut(s)	131, 366, 543, 1105, 1197, 1458
BspPI	GGATC	3 cut(s)	223, 1451, 1464
BspT104I	TTCGAA	1 cut(s)	251
BspT107I	GGYRCC	2 cut(s)	129, 1103
BspTNI	GGTCTC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	1605
BsrFI	RCCGGY	1 cut(s)	47
BsrI	ACTGG	4 cut(s)	799, 800, 899, 1111
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	5 cut(s)	117, 338, 775, 1391, 1593
BssHII	GCGCGC	1 cut(s)	177
BssMI	GATC	5 cut(s)	111, 228, 1084, 1201, 1456
BssSI	CACGAG	1 cut(s)	546
BssT1I	CCWWGG	3 cut(s)	338, 1391, 1593
Bst2BI	CACGAG	1 cut(s)	546
Bst2UI	CCWGG	2 cut(s)	530, 1340
Bst4CI	ACNGT	4 cut(s)	129, 298, 634, 813
BstBI	TTCGAA	1 cut(s)	251
BstC8I	GCNNGC	5 cut(s)	179, 305, 363, 896, 1416
BstDEI	CTNAG	7 cut(s)	506, 717, 1044, 1293, 1329, 1638, 1650
BstDSI	CCRYGG	3 cut(s)	338, 775, 1391
BstF5I	GGATG	2 cut(s)	1287, 1435
BstFNI	CGCG	2 cut(s)	179, 181
BstHHI	GCGC	2 cut(s)	179, 181
BstKTI	GATC	5 cut(s)	114, 231, 1087, 1204, 1459
BstMAI	GTCTC	2 cut(s)	160, 1634
BstMBI	GATC	5 cut(s)	111, 228, 1084, 1201, 1456
BstMCI	CGRYCG	2 cut(s)	67, 75
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 242, 623
BstNI	CCWGG	2 cut(s)	530, 1340
BstSCI	CCNGG	4 cut(s)	21, 132, 528, 1338
BstUI	CGCG	2 cut(s)	179, 181
BstV1I	GCAGC	2 cut(s)	370, 1359
BstV2I	GAAGAC	1 cut(s)	1137
BstX2I	RGATCY	3 cut(s)	111, 1084, 1456
BstXI	CCANNNNNNTGG	1 cut(s)	1118
BstYI	RGATCY	3 cut(s)	111, 1084, 1456
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	4 cut(s)	74, 150, 348, 799
BtgI	CCRYGG	3 cut(s)	338, 775, 1391
BtsCI	GGATG	2 cut(s)	1287, 1435
BtsI	GCAGTG	4 cut(s)	222, 349, 1006, 1402
BtsIMutI	CAGTG	5 cut(s)	222, 294, 349, 1006, 1402
Cac8I	GCNNGC	5 cut(s)	179, 305, 363, 896, 1416
CaiI	CAGNNNCTG	1 cut(s)	599
CfoI	GCGC	2 cut(s)	179, 181
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	6 cut(s)	121, 542, 590, 797, 962, 1590
CseI	GACGC	1 cut(s)	1493
Csp6I	GTAC	2 cut(s)	1114, 1540
CviAII	CATG	2 cut(s)	339, 1392
CviQI	GTAC	2 cut(s)	1114, 1540
DdeI	CTNAG	7 cut(s)	506, 717, 1044, 1293, 1329, 1638, 1650
DpnI	GATC	5 cut(s)	113, 230, 1086, 1203, 1458
DpnII	GATC	5 cut(s)	111, 228, 1084, 1201, 1456
DraI	TTTAAA	1 cut(s)	1021
DrdI	GACNNNNNNGTC	2 cut(s)	317, 413
DseDI	GACNNNNNNGTC	2 cut(s)	317, 413
EaeI	YGGCCR	2 cut(s)	72, 346
EagI	CGGCCG	1 cut(s)	72
EciI	GGCGGA	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	1678
EclXI	CGGCCG	1 cut(s)	72
Eco130I	CCWWGG	3 cut(s)	338, 1391, 1593
Eco24I	GRGCYC	1 cut(s)	1680
Eco31I	GGTCTC	1 cut(s)	160
Eco47I	GGWCC	5 cut(s)	121, 542, 590, 962, 1590
Eco52I	CGGCCG	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	1678
Eco57I	CTGAAG	3 cut(s)	979, 1482, 1528
Eco88I	CYCGRG	1 cut(s)	1376
EcoICRI	GAGCTC	1 cut(s)	1678
EcoO109I	RGGNCCY	1 cut(s)	542
EcoRI	GAATTC	2 cut(s)	851, 911
EcoRII	CCWGG	2 cut(s)	528, 1338
EcoT14I	CCWWGG	3 cut(s)	338, 1391, 1593
EcoT38I	GRGCYC	1 cut(s)	1680
ErhI	CCWWGG	3 cut(s)	338, 1391, 1593
FaeI	CATG	2 cut(s)	342, 1395
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 296, 328
FaqI	GGGAC	2 cut(s)	1487, 1643
FatI	CATG	2 cut(s)	338, 1391
Fnu4HI	GCNGC	2 cut(s)	384, 1373
FokI	GGATG	2 cut(s)	1274, 1442
FriOI	GRGCYC	1 cut(s)	1680
Fsp4HI	GCNGC	2 cut(s)	384, 1373
FspBI	CTAG	6 cut(s)	422, 713, 869, 891, 1088, 1095
GlaI	GCGC	2 cut(s)	178, 180
GluI	GCNGC	2 cut(s)	384, 1373
GsuI	CTGGAG	2 cut(s)	351, 1322
HaeIII	GGCC	4 cut(s)	74, 150, 348, 799
HapII	CCGG	5 cut(s)	22, 48, 67, 133, 684
HgaI	GACGC	1 cut(s)	1493
HhaI	GCGC	2 cut(s)	179, 181
Hin1II	CATG	2 cut(s)	342, 1395
Hin6I	GCGC	2 cut(s)	177, 179
HinP1I	GCGC	2 cut(s)	177, 179
HindIII	AAGCTT	2 cut(s)	1069, 1412
HinfI	GANTC	5 cut(s)	248, 782, 887, 1624, 1661
HpaII	CCGG	5 cut(s)	22, 48, 67, 133, 684
HphI	GGTGA	4 cut(s)	653, 791, 1231, 1256
Hpy166II	GTNNAC	1 cut(s)	1400
Hpy188I	TCNGA	8 cut(s)	292, 469, 720, 733, 990, 1251, 1282, 1639
Hpy8I	GTNNAC	1 cut(s)	1400
Hpy99I	CGWCG	7 cut(s)	11, 35, 212, 242, 320, 323, 326
HpyAV	CCTTC	4 cut(s)	247, 1055, 1117, 1216
HpyCH4III	ACNGT	4 cut(s)	129, 298, 634, 813
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	8 cut(s)	354, 386, 437, 626, 1407, 1418, 1475, 1493
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 242, 623
HpyF3I	CTNAG	7 cut(s)	506, 717, 1044, 1293, 1329, 1638, 1650
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	342, 1395
HspAI	GCGC	2 cut(s)	177, 179
Kpn2I	TCCGGA	1 cut(s)	683
Kzo9I	GATC	5 cut(s)	111, 228, 1084, 1201, 1456
LmnI	GCTCC	5 cut(s)	18, 284, 370, 1195, 1393
Lsp1109I	GCAGC	2 cut(s)	370, 1359
LweI	GCATC	5 cut(s)	34, 395, 424, 613, 1003
MaeI	CTAG	6 cut(s)	422, 713, 869, 891, 1088, 1095
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	3 cut(s)	565, 746, 790
MalI	GATC	5 cut(s)	113, 230, 1086, 1203, 1458
MboI	GATC	5 cut(s)	111, 228, 1084, 1201, 1456
MboII	GAAGA	7 cut(s)	532, 589, 661, 896, 946, 1142, 1309
MflI	RGATCY	3 cut(s)	111, 1084, 1456
MhlI	GDGCHC	3 cut(s)	15, 267, 1680
MlsI	TGGCCA	1 cut(s)	348
MluCI	AATT	5 cut(s)	501, 701, 740, 851, 911
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	1 cut(s)	1670
MmeI	TCCRAC	3 cut(s)	148, 306, 1060
Mox20I	TGGCCA	1 cut(s)	348
MroI	TCCGGA	1 cut(s)	683
MroXI	GAANNNNTTC	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	4 cut(s)	480, 1020, 1125, 1314
Msp20I	TGGCCA	1 cut(s)	348
MspI	CCGG	5 cut(s)	22, 48, 67, 133, 684
MspR9I	CCNGG	4 cut(s)	23, 134, 530, 1340
MvaI	CCWGG	2 cut(s)	530, 1340
MvnI	CGCG	2 cut(s)	179, 181
MwoI	GCNNNNNNNGC	3 cut(s)	233, 242, 623
NciI	CCSGG	2 cut(s)	23, 134
NcoI	CCATGG	2 cut(s)	338, 1391
NdeII	GATC	5 cut(s)	111, 228, 1084, 1201, 1456
NlaIII	CATG	2 cut(s)	342, 1395
NlaIV	GGNNCC	6 cut(s)	131, 366, 543, 1105, 1197, 1458
NmuCI	GTSAC	2 cut(s)	746, 790
NspV	TTCGAA	1 cut(s)	251
PaeR7I	CTCGAG	1 cut(s)	1376
PauI	GCGCGC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	2 cut(s)	315, 321
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	4 cut(s)	248, 782, 887, 1624
PflFI	GACNNNGTC	2 cut(s)	296, 314
PflMI	CCANNNNNTGG	2 cut(s)	344, 1397
PfoI	TCCNGGA	2 cut(s)	528, 1338
PkrI	GCNGC	2 cut(s)	385, 1374
PleI	GAGTC	1 cut(s)	1669
PpsI	GAGTC	1 cut(s)	1669
PpuMI	RGGWCCY	1 cut(s)	542
Psp124BI	GAGCTC	1 cut(s)	1680
Psp5II	RGGWCCY	1 cut(s)	542
Psp6I	CCWGG	2 cut(s)	528, 1338
PspGI	CCWGG	2 cut(s)	528, 1338
PspN4I	GGNNCC	6 cut(s)	131, 366, 543, 1105, 1197, 1458
PspPI	GGNCC	6 cut(s)	121, 542, 590, 797, 962, 1590
PspPPI	RGGWCCY	1 cut(s)	542
PspXI	VCTCGAGB	1 cut(s)	1376
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	3 cut(s)	111, 1084, 1456
PsyI	GACNNNGTC	2 cut(s)	296, 314
PteI	GCGCGC	1 cut(s)	177
RsaI	GTAC	2 cut(s)	1115, 1541
RsaNI	GTAC	2 cut(s)	1114, 1540
SacI	GAGCTC	1 cut(s)	1680
SaqAI	TTAA	4 cut(s)	480, 1020, 1125, 1314
SatI	GCNGC	2 cut(s)	384, 1373
Sau3AI	GATC	5 cut(s)	111, 228, 1084, 1201, 1456
Sau96I	GGNCC	6 cut(s)	121, 542, 590, 797, 962, 1590
ScaI	AGTACT	1 cut(s)	1115
SchI	GAGTC	1 cut(s)	1670
ScrFI	CCNGG	4 cut(s)	23, 134, 530, 1340
SduI	GDGCHC	3 cut(s)	15, 267, 1680
SfaNI	GCATC	5 cut(s)	34, 395, 424, 613, 1003
Sfr274I	CTCGAG	1 cut(s)	1376
SfuI	TTCGAA	1 cut(s)	251
SinI	GGWCC	5 cut(s)	121, 542, 590, 962, 1590
SlaI	CTCGAG	1 cut(s)	1376
SmlI	CTYRAG	2 cut(s)	394, 1376
SmoI	CTYRAG	2 cut(s)	394, 1376
Sse9I	AATT	5 cut(s)	501, 701, 740, 851, 911
SsiI	CCGC	3 cut(s)	84, 158, 181
SspMI	CTAG	6 cut(s)	422, 713, 869, 891, 1088, 1095
SstI	GAGCTC	1 cut(s)	1680
StyD4I	CCNGG	4 cut(s)	21, 132, 528, 1338
StyI	CCWWGG	3 cut(s)	338, 1391, 1593
TaaI	ACNGT	4 cut(s)	129, 298, 634, 813
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	7 cut(s)	63, 102, 251, 324, 1377, 1515, 1617
TaqII	GACCGA	1 cut(s)	109
TasI	AATT	5 cut(s)	501, 701, 740, 851, 911
TatI	WGTACW	2 cut(s)	1113, 1539
TfiI	GAWTC	4 cut(s)	248, 782, 887, 1624
Tru1I	TTAA	4 cut(s)	480, 1020, 1125, 1314
Tru9I	TTAA	4 cut(s)	480, 1020, 1125, 1314
TscAI	CASTG	5 cut(s)	229, 301, 356, 1006, 1409
TseFI	GTSAC	2 cut(s)	746, 790
TseI	GCWGC	2 cut(s)	383, 1372
Tsp45I	GTSAC	2 cut(s)	746, 790
TspDTI	ATGAA	7 cut(s)	390, 753, 774, 843, 868, 1446, 1603
TspGWI	ACGGA	1 cut(s)	1182
TspRI	CASTG	5 cut(s)	229, 301, 356, 1006, 1409
Tth111I	GACNNNGTC	2 cut(s)	296, 314
Van91I	CCANNNNNTGG	2 cut(s)	344, 1397
VpaK11BI	GGWCC	5 cut(s)	121, 542, 590, 962, 1590
XapI	RAATTY	5 cut(s)	501, 701, 740, 851, 911
XbaI	TCTAGA	2 cut(s)	868, 1087
XhoI	CTCGAG	1 cut(s)	1376
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	6 cut(s)	422, 713, 869, 891, 1088, 1095
ZrmI	AGTACT	1 cut(s)	1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.