Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011915

Physical Location & Seq

Genomic Coordinates Reverse (-)

60702247 .. 60706437

Gene Structure 4191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG378100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGAATTCTGTCTTAATTTTGATTTCTTTGTGTTCTTATAGGTGTGGCCACTGCAAGAAGCTGGTTCCAGAGTATGAAAAAGCTGCATCTATCTTGAGCAGTAATGACCCACCAGTCATTCTAGCAAAAGTTGATGCAAATGAGGAAGCAAACAAAGGACTTGCTTCTGAATATGATGTTAAGGGTTTCCCCACAATCAAAATTCTAAGAAATGGTGGGAAGATTATCCAGGAATACAAGGGTCCTCGTGAAGCCGATGGTATTGTTACTTATTTGAAGAAACAAAGTGGTCCAGCTTCTGTTGAAATAAAGAGTGCTGACGATGCAACTACTGTTATTGGTGAAAAGAAGATAGTTGTTGTTGGTGTGTTTGACAAGTTCTCTGGAGAGGAGTATGAGAAATTCTTGGCTCTAGCTCAGAAATTGCGTTCAGATTATGAATTTGGTCACACTCTTGATGCAAAGCACCTACCCCGTGGTGATTCATCTGTGACTGGGCCAGTAGTTAGACTGTTCAAGCCATTTGATGAACTTTTTGTTGATTTCAAGGAATTCAATGTAGAGGCTCTAGAGAAGTTCATTGAAGAATCTAGCTTGCCAGTTGTTACAGAATTCAACAATGACCCAGACAACCACCCTTTTGTTATCAAGTTCTTCAATGGTCCAAATGATAAGGCTATGTTGTTTCTGAACTTCAGCAGTGATGTTGCTGATGCTTTTAAATCAAAGTATCGTGAAGTAGCTGAGAAATACAAAGGAGAAGGCATAAGCTTTTTAGTTGGAGATCTAGAGGCTAGTCAAGGTGCCTTCCAGTACTTTGGACTTAAAGAAGACCAAGTGCCTCTCATCATCATACAGACCAATGACGGACAAAAGTTTTTGAAACCACATTTGGAGCCAGATCATATTTCAGTTTGGGTGAAGGAATACAAGGATGGGAAAGTATCACCATACAAGAAGTCTGAACCCATCCCTGAGAAGAACGATGACCCTGTTAAAGTTGTAGTCGCTGAGAGCCTCCAGGACATCGTTTTCAAGTCTGGGAAAAATGTGCTGCTTGAGTTTTATGCTCCATGGTGTGGACACTGCAAGAAGCTTGCACCAATCTTGGATGAAGTTGCTGTATCATTTGAAAAGGATCCTGAAGTTGTTATTGCAAAGTTTGATGCTACTGCAAATGATGTCCCAAGTGAGTTCGATGTGAAATACTATCCCACTTTGTACTTCAGGACAGCAAGTGGAAAGCTCTTGTCCCATGATGAGGAGGACAGGTCCAAGGAAAGCCTCATTGCTTTCATCGAAAAGAATCGGGACAAATCTGAGACTAAAACTGAGAACCAAGAGTCCTCAAAAGATGAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000323 GO:0000325 GO:0000326 GO:0000327 GO:0003006 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005794 GO:0005886 GO:0006457 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010109 GO:0010154 GO:0010205 GO:0010941 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019222 GO:0022414 GO:0030312 GO:0031090 GO:0031323 GO:0031324 GO:0031974 GO:0032501 GO:0032502 GO:0033554 GO:0034975 GO:0034976 GO:0042221 GO:0042548 GO:0043067 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043467 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0071944 GO:0098588 GO:0098805 GO:0140096 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

454

Amino Acids

50.96

Weight (kDa)

5.13

Isoelectric Point (pI)

31.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	5 - 94	2.2e-17	Thioredoxin
Thioredoxin_6	PF13848	124 - 308	2.5e-25	Thioredoxin-like domain
Thioredoxin	PF00085	332 - 435	4.5e-23	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21750 AT1G21750 AT1G77510
fragaria_vesca	FvH4_2g27200
malus_domestica	MD08G1161100.v1.1 MD15G1346200.v1.1
prunus_persica	Prupe.1G494100_v2.0.a1
pyrus_communis	pycom08g13850 pycom15g31030
rosa_chinensis	RchiOBHm_Chr6g0296111
rosa_laevigata	RLG00000011730
rosa_multiflora	Rmu_co8489943.1_g000001 Rmu_sc0003139.1_g000043
rosa_roxburghii	Rroxscaffold_7G00178210
rosa_rugosa	Rorug06G0257800
rosa_samantha	Rh6BG378100 Rh6CG383600 Rh6DG370600
rosa_wichuraiana	Rw6G032300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AccB1I	GGYRCC	1 cut(s)	803
AccB7I	CCANNNNNTGG	1 cut(s)	1079
AclWI	GGATC	2 cut(s)	1133, 1146
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	6 cut(s)	4, 201, 401, 440, 551, 611
AcuI	CTGAAG	3 cut(s)	679, 1164, 1210
AfaI	GTAC	2 cut(s)	815, 1223
AfiI	CCNNNNNNNGG	2 cut(s)	1079, 1261
AjnI	CCWGG	2 cut(s)	228, 1020
AjuI	GAANNNNNNNTTGG	2 cut(s)	875, 907
AloI	GAACNNNNNNTCC	2 cut(s)	1328, 1360
Alw21I	GWGCWC	1 cut(s)	1362
Alw26I	GTCTC	1 cut(s)	1316
AlwI	GGATC	2 cut(s)	1133, 1146
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	2 cut(s)	46, 497
ApeKI	GCWGC	2 cut(s)	83, 1054
ApoI	RAATTY	6 cut(s)	4, 201, 401, 440, 551, 611
AspS9I	GGNCC	5 cut(s)	242, 290, 497, 662, 1272
AsuHPI	GGTGA	4 cut(s)	353, 491, 931, 939
AvaII	GGWCC	4 cut(s)	242, 290, 662, 1272
BalI	TGGCCA	1 cut(s)	48
BamHI	GGATCC	1 cut(s)	1138
BanI	GGYRCC	1 cut(s)	803
BanII	GRGCYC	1 cut(s)	1362
BauI	CACGAG	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	837
Bbv12I	GWGCWC	1 cut(s)	1362
BbvI	GCAGC	2 cut(s)	70, 1041
BccI	CCATC	3 cut(s)	251, 929, 977
BciT130I	CCWGG	2 cut(s)	230, 1022
BcoDI	GTCTC	1 cut(s)	1316
BfaI	CTAG	6 cut(s)	122, 413, 569, 591, 788, 795
BglII	AGATCT	1 cut(s)	784
BisI	GCNGC	2 cut(s)	84, 1055
BlsI	GCNGC	2 cut(s)	85, 1056
BmcAI	AGTACT	1 cut(s)	815
Bme1390I	CCNGG	2 cut(s)	230, 1022
Bme18I	GGWCC	4 cut(s)	242, 290, 662, 1272
BmgT120I	GGNCC	5 cut(s)	242, 290, 497, 662, 1272
BmiI	GGNNCC	5 cut(s)	66, 243, 805, 897, 1140
BmrFI	CCNGG	2 cut(s)	230, 1022
BmrI	ACTGGG	1 cut(s)	504
BmsI	GCATC	6 cut(s)	95, 124, 313, 448, 703, 1156
BmuI	ACTGGG	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	837
BpmI	CTGGAG	2 cut(s)	405, 1004
BpuEI	CTTGAG	2 cut(s)	115, 1079
BsaJI	CCNNGG	3 cut(s)	475, 1073, 1275
BsaXI	ACNNNNNCTCC	2 cut(s)	1256, 1286
Bsc4I	CCNNNNNNNGG	2 cut(s)	1079, 1261
Bse1I	ACTGG	5 cut(s)	113, 499, 500, 599, 811
Bse3DI	GCAATG	1 cut(s)	1287
BseBI	CCWGG	2 cut(s)	230, 1022
BseDI	CCNNGG	3 cut(s)	475, 1073, 1275
BseGI	GGATG	3 cut(s)	940, 969, 1117
BseLI	CCNNNNNNNGG	2 cut(s)	1079, 1261
BseMI	GCAATG	1 cut(s)	1287
BseMII	CTCAG	6 cut(s)	431, 735, 966, 1002, 1311, 1323
BseNI	ACTGG	5 cut(s)	113, 499, 500, 599, 811
BseRI	GAGGAG	2 cut(s)	404, 1277
BseXI	GCAGC	2 cut(s)	70, 1041
BshFI	GGCC	2 cut(s)	48, 499
BshNI	GGYRCC	1 cut(s)	803
BsiHKAI	GWGCWC	1 cut(s)	1362
BslFI	GGGAC	3 cut(s)	1169, 1237, 1325
BslI	CCNNNNNNNGG	2 cut(s)	1079, 1261
BsmAI	GTCTC	1 cut(s)	1316
BsmFI	GGGAC	3 cut(s)	1169, 1237, 1325
BsnI	GGCC	2 cut(s)	48, 499
Bsp1286I	GDGCHC	1 cut(s)	1362
Bsp143I	GATC	3 cut(s)	784, 901, 1138
Bsp19I	CCATGG	1 cut(s)	1073
BspANI	GGCC	2 cut(s)	48, 499
BspCNI	CTCAG	6 cut(s)	430, 736, 967, 1003, 1312, 1324
BspLI	GGNNCC	5 cut(s)	66, 243, 805, 897, 1140
BspPI	GGATC	2 cut(s)	1133, 1146
BspT107I	GGYRCC	1 cut(s)	803
BsrDI	GCAATG	1 cut(s)	1287
BsrI	ACTGG	5 cut(s)	113, 499, 500, 599, 811
BssECI	CCNNGG	3 cut(s)	475, 1073, 1275
BssMI	GATC	3 cut(s)	784, 901, 1138
BssSI	CACGAG	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	1073, 1275
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	2 cut(s)	230, 1022
Bst4CI	ACNGT	2 cut(s)	334, 513
BstC8I	GCNNGC	2 cut(s)	596, 1098
BstDEI	CTNAG	7 cut(s)	206, 417, 744, 975, 1011, 1320, 1332
BstDSI	CCRYGG	2 cut(s)	475, 1073
BstF5I	GGATG	3 cut(s)	940, 969, 1117
BstKTI	GATC	3 cut(s)	787, 904, 1141
BstMAI	GTCTC	1 cut(s)	1316
BstMBI	GATC	3 cut(s)	784, 901, 1138
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	2 cut(s)	230, 1022
BstSCI	CCNGG	2 cut(s)	228, 1020
BstV1I	GCAGC	2 cut(s)	70, 1041
BstV2I	GAAGAC	1 cut(s)	837
BstX2I	RGATCY	2 cut(s)	784, 1138
BstXI	CCANNNNNNTGG	1 cut(s)	818
BstYI	RGATCY	2 cut(s)	784, 1138
BsuRI	GGCC	2 cut(s)	48, 499
BtgI	CCRYGG	2 cut(s)	475, 1073
BtsCI	GGATG	3 cut(s)	940, 969, 1117
BtsI	GCAGTG	3 cut(s)	49, 706, 1084
BtsIMutI	CAGTG	3 cut(s)	49, 706, 1084
Cac8I	GCNNGC	2 cut(s)	596, 1098
CaiI	CAGNNNCTG	1 cut(s)	299
Cfr13I	GGNCC	5 cut(s)	242, 290, 497, 662, 1272
Csp6I	GTAC	2 cut(s)	814, 1222
CviAII	CATG	2 cut(s)	1074, 1256
CviQI	GTAC	2 cut(s)	814, 1222
DdeI	CTNAG	7 cut(s)	206, 417, 744, 975, 1011, 1320, 1332
DpnI	GATC	3 cut(s)	786, 903, 1140
DpnII	GATC	3 cut(s)	784, 901, 1138
DraI	TTTAAA	1 cut(s)	721
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	46
Ecl136II	GAGCTC	1 cut(s)	1360
Eco130I	CCWWGG	2 cut(s)	1073, 1275
Eco24I	GRGCYC	1 cut(s)	1362
Eco47I	GGWCC	4 cut(s)	242, 290, 662, 1272
Eco53kI	GAGCTC	1 cut(s)	1360
Eco57I	CTGAAG	3 cut(s)	679, 1164, 1210
EcoICRI	GAGCTC	1 cut(s)	1360
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRI	GAATTC	3 cut(s)	4, 551, 611
EcoRII	CCWGG	2 cut(s)	228, 1020
EcoT14I	CCWWGG	2 cut(s)	1073, 1275
EcoT38I	GRGCYC	1 cut(s)	1362
ErhI	CCWWGG	2 cut(s)	1073, 1275
FaeI	CATG	2 cut(s)	1077, 1259
FaqI	GGGAC	3 cut(s)	1169, 1237, 1325
FatI	CATG	2 cut(s)	1073, 1255
Fnu4HI	GCNGC	2 cut(s)	84, 1055
FokI	GGATG	3 cut(s)	947, 956, 1124
FriOI	GRGCYC	1 cut(s)	1362
Fsp4HI	GCNGC	2 cut(s)	84, 1055
FspBI	CTAG	6 cut(s)	122, 413, 569, 591, 788, 795
GluI	GCNGC	2 cut(s)	84, 1055
GsuI	CTGGAG	2 cut(s)	405, 1004
HaeIII	GGCC	2 cut(s)	48, 499
Hin1II	CATG	2 cut(s)	1077, 1259
HindIII	AAGCTT	2 cut(s)	769, 1094
HinfI	GANTC	4 cut(s)	482, 587, 1306, 1343
HphI	GGTGA	4 cut(s)	353, 491, 931, 939
Hpy166II	GTNNAC	1 cut(s)	1082
Hpy188I	TCNGA	6 cut(s)	169, 420, 433, 690, 964, 1321
Hpy8I	GTNNAC	1 cut(s)	1082
HpyAV	CCTTC	3 cut(s)	755, 817, 916
HpyCH4III	ACNGT	2 cut(s)	334, 513
HpyCH4V	TGCA	9 cut(s)	54, 86, 137, 326, 461, 1089, 1100, 1157, 1175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	7 cut(s)	206, 417, 744, 975, 1011, 1320, 1332
Hsp92II	CATG	2 cut(s)	1077, 1259
Kzo9I	GATC	3 cut(s)	784, 901, 1138
LmnI	GCTCC	2 cut(s)	895, 1075
Lsp1109I	GCAGC	2 cut(s)	70, 1041
LweI	GCATC	6 cut(s)	95, 124, 313, 448, 703, 1156
MaeI	CTAG	6 cut(s)	122, 413, 569, 591, 788, 795
MaeIII	GTNAC	4 cut(s)	265, 446, 490, 604
MalI	GATC	3 cut(s)	786, 903, 1140
MboI	GATC	3 cut(s)	784, 901, 1138
MboII	GAAGA	7 cut(s)	232, 289, 361, 596, 646, 842, 991
MflI	RGATCY	2 cut(s)	784, 1138
MhlI	GDGCHC	1 cut(s)	1362
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	8 cut(s)	4, 15, 201, 401, 422, 440, 551, 611
MluNI	TGGCCA	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	1352
MmeI	TCCRAC	1 cut(s)	760
Mox20I	TGGCCA	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	48
MseI	TTAA	5 cut(s)	14, 180, 720, 825, 996
Msp20I	TGGCCA	1 cut(s)	48
MspR9I	CCNGG	2 cut(s)	230, 1022
MvaI	CCWGG	2 cut(s)	230, 1022
MwoI	GCNNNNNNNGC	1 cut(s)	323
NcoI	CCATGG	1 cut(s)	1073
NdeII	GATC	3 cut(s)	784, 901, 1138
NlaIII	CATG	2 cut(s)	1077, 1259
NlaIV	GGNNCC	5 cut(s)	66, 243, 805, 897, 1140
NmuCI	GTSAC	2 cut(s)	446, 490
PfeI	GAWTC	3 cut(s)	482, 587, 1306
PflMI	CCANNNNNTGG	1 cut(s)	1079
PfoI	TCCNGGA	2 cut(s)	228, 1020
PkrI	GCNGC	2 cut(s)	85, 1056
PleI	GAGTC	1 cut(s)	1351
PpsI	GAGTC	1 cut(s)	1351
PpuMI	RGGWCCY	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	1362
Psp5II	RGGWCCY	1 cut(s)	242
Psp6I	CCWGG	2 cut(s)	228, 1020
PspGI	CCWGG	2 cut(s)	228, 1020
PspN4I	GGNNCC	5 cut(s)	66, 243, 805, 897, 1140
PspPI	GGNCC	5 cut(s)	242, 290, 497, 662, 1272
PspPPI	RGGWCCY	1 cut(s)	242
PstNI	CAGNNNCTG	1 cut(s)	299
PsuI	RGATCY	2 cut(s)	784, 1138
RsaI	GTAC	2 cut(s)	815, 1223
RsaNI	GTAC	2 cut(s)	814, 1222
SacI	GAGCTC	1 cut(s)	1362
SaqAI	TTAA	5 cut(s)	14, 180, 720, 825, 996
SatI	GCNGC	2 cut(s)	84, 1055
Sau3AI	GATC	3 cut(s)	784, 901, 1138
Sau96I	GGNCC	5 cut(s)	242, 290, 497, 662, 1272
ScaI	AGTACT	1 cut(s)	815
SchI	GAGTC	1 cut(s)	1352
ScrFI	CCNGG	2 cut(s)	230, 1022
SduI	GDGCHC	1 cut(s)	1362
SfaNI	GCATC	6 cut(s)	95, 124, 313, 448, 703, 1156
SinI	GGWCC	4 cut(s)	242, 290, 662, 1272
SmlI	CTYRAG	2 cut(s)	94, 1058
SmoI	CTYRAG	2 cut(s)	94, 1058
Sse9I	AATT	8 cut(s)	4, 15, 201, 401, 422, 440, 551, 611
SspMI	CTAG	6 cut(s)	122, 413, 569, 591, 788, 795
SstI	GAGCTC	1 cut(s)	1362
StyD4I	CCNGG	2 cut(s)	228, 1020
StyI	CCWWGG	2 cut(s)	1073, 1275
TaaI	ACNGT	2 cut(s)	334, 513
TaqI	TCGA	2 cut(s)	1197, 1299
TasI	AATT	8 cut(s)	4, 15, 201, 401, 422, 440, 551, 611
TatI	WGTACW	2 cut(s)	813, 1221
TfiI	GAWTC	3 cut(s)	482, 587, 1306
Tru1I	TTAA	5 cut(s)	14, 180, 720, 825, 996
Tru9I	TTAA	5 cut(s)	14, 180, 720, 825, 996
TscAI	CASTG	3 cut(s)	56, 706, 1091
TseFI	GTSAC	2 cut(s)	446, 490
TseI	GCWGC	2 cut(s)	83, 1054
Tsp45I	GTSAC	2 cut(s)	446, 490
TspDTI	ATGAA	8 cut(s)	17, 90, 453, 474, 543, 568, 1128, 1285
TspGWI	ACGGA	1 cut(s)	882
TspRI	CASTG	3 cut(s)	56, 706, 1091
Van91I	CCANNNNNTGG	1 cut(s)	1079
VpaK11BI	GGWCC	4 cut(s)	242, 290, 662, 1272
XapI	RAATTY	6 cut(s)	4, 201, 401, 440, 551, 611
XbaI	TCTAGA	2 cut(s)	568, 787
XspI	CTAG	6 cut(s)	122, 413, 569, 591, 788, 795
ZrmI	AGTACT	1 cut(s)	815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.