RLG00000011730

disulfide-isomerase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
12241760 .. 12245228
3469 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011730

Sequence Viewer

Length: 1497 bp
ATGGCGTCCTCTAGGGTTTTGCTCTTCTTCTCCTTGCTCGTCGCTCTGTGCTTCACTGCGATCCACGCCGACGAGGCTGATTCGAAGGAGTTCGTGCTCACTTTGGACAGCTCCAACTTCTCTGACACTGTCAGCAAGCACGACTTCGTCGTCGTCGAGTTCTACGCCCCATGGTGTGGCCACTGCAAGAAGCTGGCTCCAGAGTATGAAAAAGCTGCATCTATCTTGAGCAGTAATGACCCACCAGTCATTCTAGCGAAAGTTGATGCAAATGAGGAAGCAAACAAAGGACTTGCTTCTGAATATGATGTTAAGGGTTTCCCCACAATCAAAATTCTAAGAAATGGTGGGAAGATTATCCAGGAATACAAGGGTCCTCGTGAAGCCGATGGTATTGTTACTTATTTGAAGAAACAAAGTGGTCCAGCTTCTGTTGAAATAAAGAGTGCTGATGATGCAACTACTGTTATTGGTGAAAAGAAGATAGTTGTTGTTGGTGTGTTTGACAAGTTCTCTGGAGAGGAGTATGAGAAATTCTTGGCTCTAGCTCAGAAATTGCGTTCAGATTATGAATTTGGTCACACTCTTGATGCTAAGCACCTACCCCGTGGTGATTCATCTGTGACTGGGCCAGTAGTTAGACTGTTCAAGCCATTTGATGAACTTTTTGTTGATTTCAAGGAATTCAATGTAGAGGCTCTAGAAAAGTTCATTTCAGAATCTAGCTTGCCAGTTGTTACAGAATTCAACAATGACCCAGACAACCACCCTTTTGTTATCAAGTTCTTCAATGGTCCAAATGATAAGGCTATGTTGTTTCTGAACTTCAGCAGTGATGTTGCTGATGCTTTTAAATCAAAGTATCGTGAAGTAGCTGAGAAATACAAAGGAGAAGGCATAAGCTTTTTAGTTGGAGATCTAGAGGCTAGTCAAGGTGCCTTCCAGTACTTTGGACTTAAAGAAGACCAAGTGCCTCTCATCATCATACAGACCAATGACGGACAAAAGTTTTTGAAACCACATTTGGAGCCAGATCATATTTCAGTTTGGGTGAAGGAATACAAGGATGGGAAAGTATCACCATACAAGAAGTCTGAACCCATCCCTGAGAAGAACGATGACCCTGTTAAAGTTGTAGTCGCTGAGAGCCTCCAGGACATCGTTTTCAAGTCTGGGAAAAATGTGCTACTTGAGTTTTATGCTCCATGGTGTGGACACTGCAAGAAGCTTGCACCAATCTTGGATGAAGTTGCTGTATCATTTGAAAAAGATCCTGAAGTTGTTATTGCAAAGTTTGATGCTACTGCAAATGATGTCCCAAGTGAGTTCGATGTGAAATACTACCCAACTTTGTACTTCAGGACAGCAAGTGGAAAGCTCTTGTCCTATGATGAGGAGGACAGGTCCAAGGAAAGCCTCATTGCTTTCATCGAAAAGAATCGGGACAAATCTGAGACTAAAACTGAGAACCAAGAGTCCTCAAAAGATGAGCTCTAA

Protein Analysis

499

Amino Acids

55.82

Weight (kDa)

5.0

Isoelectric Point (pI)

31.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 32 - 138 7e-29 Thioredoxin
Thioredoxin_2 PF13098 47 - 127 4.6e-07 Thioredoxin-like domain
Thioredoxin_6 PF13848 168 - 352 4e-25 Thioredoxin-like domain
Thioredoxin PF00085 376 - 479 4.5e-23 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011915)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 149, 245
AccB1I GGYRCC 1 cut(s) 935
AccB7I CCANNNNNTGG 2 cut(s) 176, 1211
AclWI GGATC 2 cut(s) 55, 1265
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 5 cut(s) 333, 533, 572, 683, 743
AcuI CTGAAG 3 cut(s) 811, 1296, 1342
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 947, 1355
AfiI CCNNNNNNNGG 2 cut(s) 176, 1211
AjnI CCWGG 2 cut(s) 360, 1152
AjuI GAANNNNNNNTTGG 2 cut(s) 1007, 1039
AloI GAACNNNNNNTCC 2 cut(s) 1460, 1492
Alw21I GWGCWC 2 cut(s) 99, 1494
Alw26I GTCTC 1 cut(s) 1448
AlwI GGATC 2 cut(s) 55, 1265
AlwNI CAGNNNCTG 1 cut(s) 431
AoxI GGCC 2 cut(s) 178, 629
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 5 cut(s) 333, 533, 572, 683, 743
Asp700I GAANNNNTTC 1 cut(s) 89
AspS9I GGNCC 5 cut(s) 374, 422, 629, 794, 1404
AsuHPI GGTGA 4 cut(s) 485, 623, 1063, 1071
AsuII TTCGAA 1 cut(s) 83
AvaII GGWCC 4 cut(s) 374, 422, 794, 1404
BalI TGGCCA 1 cut(s) 180
BanI GGYRCC 1 cut(s) 935
BanII GRGCYC 1 cut(s) 1494
BauI CACGAG 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 969
Bbv12I GWGCWC 2 cut(s) 99, 1494
BbvI GCAGC 1 cut(s) 202
BccI CCATC 3 cut(s) 383, 1061, 1109
BciT130I CCWGG 2 cut(s) 362, 1154
BcoDI GTCTC 1 cut(s) 1448
BfaI CTAG 7 cut(s) 12, 254, 545, 701, 723, 920, 927
BglI GCCNNNNNGGC 1 cut(s) 74
BglII AGATCT 1 cut(s) 916
BisI GCNGC 1 cut(s) 216
BlpI GCTNAGC 1 cut(s) 594
BlsI GCNGC 1 cut(s) 217
BmcAI AGTACT 1 cut(s) 947
Bme1390I CCNGG 2 cut(s) 362, 1154
Bme18I GGWCC 4 cut(s) 374, 422, 794, 1404
BmgT120I GGNCC 5 cut(s) 374, 422, 629, 794, 1404
BmiI GGNNCC 4 cut(s) 198, 375, 937, 1029
BmrFI CCNGG 2 cut(s) 362, 1154
BmrI ACTGGG 1 cut(s) 636
BmsI GCATC 6 cut(s) 227, 256, 445, 580, 835, 1288
BmuI ACTGGG 1 cut(s) 636
BpiI GAAGAC 1 cut(s) 969
BpmI CTGGAG 3 cut(s) 183, 537, 1136
Bpu1102I GCTNAGC 1 cut(s) 594
Bpu14I TTCGAA 1 cut(s) 83
BpuEI CTTGAG 2 cut(s) 247, 1211
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 170, 607, 1205, 1407
BsaXI ACNNNNNCTCC 2 cut(s) 1388, 1418
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 1211
Bse1I ACTGG 5 cut(s) 245, 631, 632, 731, 943
Bse3DI GCAATG 1 cut(s) 1419
BseBI CCWGG 2 cut(s) 362, 1154
BseDI CCNNGG 4 cut(s) 170, 607, 1205, 1407
BseGI GGATG 3 cut(s) 1072, 1101, 1249
BseLI CCNNNNNNNGG 2 cut(s) 176, 1211
BseMI GCAATG 1 cut(s) 1419
BseMII CTCAG 6 cut(s) 563, 867, 1098, 1134, 1443, 1455
BseNI ACTGG 5 cut(s) 245, 631, 632, 731, 943
BseRI GAGGAG 2 cut(s) 536, 1409
BseXI GCAGC 1 cut(s) 202
BshFI GGCC 2 cut(s) 180, 631
BshNI GGYRCC 1 cut(s) 935
BsiHKAI GWGCWC 2 cut(s) 99, 1494
BslFI GGGAC 2 cut(s) 1301, 1457
BslI CCNNNNNNNGG 2 cut(s) 176, 1211
BsmAI GTCTC 1 cut(s) 1448
BsmFI GGGAC 2 cut(s) 1301, 1457
BsnI GGCC 2 cut(s) 180, 631
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 99, 1494
Bsp143I GATC 4 cut(s) 60, 916, 1033, 1270
Bsp1720I GCTNAGC 1 cut(s) 594
Bsp19I CCATGG 2 cut(s) 170, 1205
BspANI GGCC 2 cut(s) 180, 631
BspCNI CTCAG 6 cut(s) 562, 868, 1099, 1135, 1444, 1456
BspLI GGNNCC 4 cut(s) 198, 375, 937, 1029
BspPI GGATC 2 cut(s) 55, 1265
BspQI GCTCTTC 1 cut(s) 29
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 935
BsrDI GCAATG 1 cut(s) 1419
BsrI ACTGG 5 cut(s) 245, 631, 632, 731, 943
BssECI CCNNGG 4 cut(s) 170, 607, 1205, 1407
BssMI GATC 4 cut(s) 60, 916, 1033, 1270
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 378
BssT1I CCWWGG 3 cut(s) 170, 1205, 1407
Bst2BI CACGAG 1 cut(s) 378
Bst2UI CCWGG 2 cut(s) 362, 1154
Bst4CI ACNGT 3 cut(s) 130, 466, 645
Bst6I CTCTTC 1 cut(s) 29
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 4 cut(s) 137, 195, 728, 1230
BstDEI CTNAG 8 cut(s) 338, 549, 594, 876, 1107, 1143, 1452, 1464
BstDSI CCRYGG 3 cut(s) 170, 607, 1205
BstF5I GGATG 3 cut(s) 1072, 1101, 1249
BstKTI GATC 4 cut(s) 63, 919, 1036, 1273
BstMAI GTCTC 1 cut(s) 1448
BstMBI GATC 4 cut(s) 60, 916, 1033, 1270
BstMWI GCNNNNNNNGC 3 cut(s) 65, 74, 455
BstNI CCWGG 2 cut(s) 362, 1154
BstSCI CCNGG 2 cut(s) 360, 1152
BstV1I GCAGC 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 969
BstX2I RGATCY 2 cut(s) 916, 1270
BstXI CCANNNNNNTGG 1 cut(s) 950
BstYI RGATCY 2 cut(s) 916, 1270
BsuRI GGCC 2 cut(s) 180, 631
BtgI CCRYGG 3 cut(s) 170, 607, 1205
BtsCI GGATG 3 cut(s) 1072, 1101, 1249
BtsI GCAGTG 4 cut(s) 54, 181, 838, 1216
BtsIMutI CAGTG 5 cut(s) 54, 126, 181, 838, 1216
Cac8I GCNNGC 4 cut(s) 137, 195, 728, 1230
CaiI CAGNNNCTG 1 cut(s) 431
Cfr13I GGNCC 5 cut(s) 374, 422, 629, 794, 1404
Csp6I GTAC 2 cut(s) 946, 1354
CviAII CATG 2 cut(s) 171, 1206
CviQI GTAC 2 cut(s) 946, 1354
DdeI CTNAG 8 cut(s) 338, 549, 594, 876, 1107, 1143, 1452, 1464
DpnI GATC 4 cut(s) 62, 918, 1035, 1272
DpnII GATC 4 cut(s) 60, 916, 1033, 1270
DraI TTTAAA 1 cut(s) 853
DrdI GACNNNNNNGTC 2 cut(s) 149, 245
DseDI GACNNNNNNGTC 2 cut(s) 149, 245
EaeI YGGCCR 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Ecl136II GAGCTC 1 cut(s) 1492
Eco130I CCWWGG 3 cut(s) 170, 1205, 1407
Eco24I GRGCYC 1 cut(s) 1494
Eco47I GGWCC 4 cut(s) 374, 422, 794, 1404
Eco53kI GAGCTC 1 cut(s) 1492
Eco57I CTGAAG 3 cut(s) 811, 1296, 1342
EcoICRI GAGCTC 1 cut(s) 1492
EcoO109I RGGNCCY 1 cut(s) 374
EcoRI GAATTC 2 cut(s) 683, 743
EcoRII CCWGG 2 cut(s) 360, 1152
EcoT14I CCWWGG 3 cut(s) 170, 1205, 1407
EcoT38I GRGCYC 1 cut(s) 1494
ErhI CCWWGG 3 cut(s) 170, 1205, 1407
FaeI CATG 2 cut(s) 174, 1209
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 2 cut(s) 1301, 1457
FatI CATG 2 cut(s) 170, 1205
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 3 cut(s) 1079, 1088, 1256
FriOI GRGCYC 1 cut(s) 1494
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 7 cut(s) 12, 254, 545, 701, 723, 920, 927
GluI GCNGC 1 cut(s) 216
GsuI CTGGAG 3 cut(s) 183, 537, 1136
HaeIII GGCC 2 cut(s) 180, 631
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 174, 1209
HindIII AAGCTT 2 cut(s) 901, 1226
HinfI GANTC 5 cut(s) 80, 614, 719, 1438, 1475
HphI GGTGA 4 cut(s) 485, 623, 1063, 1071
Hpy166II GTNNAC 1 cut(s) 1214
Hpy188I TCNGA 8 cut(s) 124, 301, 552, 565, 718, 822, 1096, 1453
Hpy8I GTNNAC 1 cut(s) 1214
Hpy99I CGWCG 5 cut(s) 44, 74, 152, 155, 158
HpyAV CCTTC 4 cut(s) 79, 887, 949, 1048
HpyCH4III ACNGT 3 cut(s) 130, 466, 645
HpyCH4V TGCA 8 cut(s) 186, 218, 269, 458, 1221, 1232, 1289, 1307
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 74, 455
HpyF3I CTNAG 8 cut(s) 338, 549, 594, 876, 1107, 1143, 1452, 1464
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 174, 1209
Kzo9I GATC 4 cut(s) 60, 916, 1033, 1270
LguI GCTCTTC 1 cut(s) 29
LmnI GCTCC 4 cut(s) 116, 202, 1027, 1207
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 6 cut(s) 227, 256, 445, 580, 835, 1288
MaeI CTAG 7 cut(s) 12, 254, 545, 701, 723, 920, 927
MaeIII GTNAC 4 cut(s) 397, 578, 622, 736
MalI GATC 4 cut(s) 62, 918, 1035, 1272
MboI GATC 4 cut(s) 60, 916, 1033, 1270
MboII GAAGA 8 cut(s) 16, 19, 364, 421, 493, 778, 974, 1123
MflI RGATCY 2 cut(s) 916, 1270
MhlI GDGCHC 2 cut(s) 99, 1494
MlsI TGGCCA 1 cut(s) 180
MluCI AATT 6 cut(s) 333, 533, 554, 572, 683, 743
MluNI TGGCCA 1 cut(s) 180
MlyI GAGTC 1 cut(s) 1484
MmeI TCCRAC 2 cut(s) 138, 892
Mox20I TGGCCA 1 cut(s) 180
MroXI GAANNNNTTC 1 cut(s) 89
MscI TGGCCA 1 cut(s) 180
MseI TTAA 4 cut(s) 312, 852, 957, 1128
Msp20I TGGCCA 1 cut(s) 180
MspR9I CCNGG 2 cut(s) 362, 1154
MvaI CCWGG 2 cut(s) 362, 1154
MwoI GCNNNNNNNGC 3 cut(s) 65, 74, 455
NcoI CCATGG 2 cut(s) 170, 1205
NdeII GATC 4 cut(s) 60, 916, 1033, 1270
NlaIII CATG 2 cut(s) 174, 1209
NlaIV GGNNCC 4 cut(s) 198, 375, 937, 1029
NmuCI GTSAC 2 cut(s) 578, 622
NspV TTCGAA 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 153
PdmI GAANNNNTTC 1 cut(s) 89
PfeI GAWTC 4 cut(s) 80, 614, 719, 1438
PflFI GACNNNGTC 2 cut(s) 128, 146
PflMI CCANNNNNTGG 2 cut(s) 176, 1211
PfoI TCCNGGA 2 cut(s) 360, 1152
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 1 cut(s) 1483
PpsI GAGTC 1 cut(s) 1483
PpuMI RGGWCCY 1 cut(s) 374
Psp124BI GAGCTC 1 cut(s) 1494
Psp5II RGGWCCY 1 cut(s) 374
Psp6I CCWGG 2 cut(s) 360, 1152
PspGI CCWGG 2 cut(s) 360, 1152
PspN4I GGNNCC 4 cut(s) 198, 375, 937, 1029
PspPI GGNCC 5 cut(s) 374, 422, 629, 794, 1404
PspPPI RGGWCCY 1 cut(s) 374
PstNI CAGNNNCTG 1 cut(s) 431
PsuI RGATCY 2 cut(s) 916, 1270
PsyI GACNNNGTC 2 cut(s) 128, 146
RsaI GTAC 2 cut(s) 947, 1355
RsaNI GTAC 2 cut(s) 946, 1354
SacI GAGCTC 1 cut(s) 1494
SapI GCTCTTC 1 cut(s) 29
SaqAI TTAA 4 cut(s) 312, 852, 957, 1128
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 4 cut(s) 60, 916, 1033, 1270
Sau96I GGNCC 5 cut(s) 374, 422, 629, 794, 1404
ScaI AGTACT 1 cut(s) 947
SchI GAGTC 1 cut(s) 1484
ScrFI CCNGG 2 cut(s) 362, 1154
SduI GDGCHC 2 cut(s) 99, 1494
SfaNI GCATC 6 cut(s) 227, 256, 445, 580, 835, 1288
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 4 cut(s) 374, 422, 794, 1404
SmlI CTYRAG 2 cut(s) 226, 1190
SmoI CTYRAG 2 cut(s) 226, 1190
Sse9I AATT 6 cut(s) 333, 533, 554, 572, 683, 743
SspMI CTAG 7 cut(s) 12, 254, 545, 701, 723, 920, 927
SstI GAGCTC 1 cut(s) 1494
StyD4I CCNGG 2 cut(s) 360, 1152
StyI CCWWGG 3 cut(s) 170, 1205, 1407
TaaI ACNGT 3 cut(s) 130, 466, 645
TaqI TCGA 4 cut(s) 83, 156, 1329, 1431
TasI AATT 6 cut(s) 333, 533, 554, 572, 683, 743
TatI WGTACW 2 cut(s) 945, 1353
TfiI GAWTC 4 cut(s) 80, 614, 719, 1438
Tru1I TTAA 4 cut(s) 312, 852, 957, 1128
Tru9I TTAA 4 cut(s) 312, 852, 957, 1128
TscAI CASTG 5 cut(s) 61, 133, 188, 838, 1223
TseFI GTSAC 2 cut(s) 578, 622
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 2 cut(s) 578, 622
TspDTI ATGAA 7 cut(s) 222, 585, 606, 675, 700, 1260, 1417
TspGWI ACGGA 1 cut(s) 1014
TspRI CASTG 5 cut(s) 61, 133, 188, 838, 1223
Tth111I GACNNNGTC 2 cut(s) 128, 146
Van91I CCANNNNNTGG 2 cut(s) 176, 1211
VpaK11BI GGWCC 4 cut(s) 374, 422, 794, 1404
XapI RAATTY 5 cut(s) 333, 533, 572, 683, 743
XbaI TCTAGA 2 cut(s) 700, 919
XmnI GAANNNNTTC 1 cut(s) 89
XspI CTAG 7 cut(s) 12, 254, 545, 701, 723, 920, 927
ZrmI AGTACT 1 cut(s) 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.