Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011915

Physical Location & Seq

Genomic Coordinates Reverse (-)

40462177 .. 40462506

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0257800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGACCCAAATTCATCTCCTTCCAATTCCAATTCCAACACCACCATTCCGGTAGTGGCAACCCTCCCCGCTTTCGGGTCGGACTCTTTGACCCGGAAGCCCATCAGCTTGTGGCCCGGAATGTTCCACTCGCCGGTGACCCAGGCACTGTGGGAAGCGAGGTCTCACATGTTCGAGAGGCTCTTGGACCCACCAGCAGACGCTCCTCCGCAGAGCGAATTGCTGAACAAGACTCCGTCTCAGAGCAGGACTACAATTCTCTACAATTTCTCCACTGATTTTATACTGAGGGAGCAGTACAGGGATCCTTGGAATTGGGAAACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000323 GO:0000325 GO:0000326 GO:0000327 GO:0003006 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005794 GO:0005886 GO:0006457 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010109 GO:0010154 GO:0010205 GO:0010941 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019222 GO:0022414 GO:0030312 GO:0031090 GO:0031323 GO:0031324 GO:0031974 GO:0032501 GO:0032502 GO:0033554 GO:0034975 GO:0034976 GO:0042221 GO:0042548 GO:0043067 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043467 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0071944 GO:0098588 GO:0098805 GO:0140096 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

109

Amino Acids

12.32

Weight (kDa)

5.16

Isoelectric Point (pI)

63.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21750 AT1G21750 AT1G77510
fragaria_vesca	FvH4_2g27200
malus_domestica	MD08G1161100.v1.1 MD15G1346200.v1.1
prunus_persica	Prupe.1G494100_v2.0.a1
pyrus_communis	pycom08g13850 pycom15g31030
rosa_chinensis	RchiOBHm_Chr6g0296111
rosa_laevigata	RLG00000011730
rosa_multiflora	Rmu_co8489943.1_g000001 Rmu_sc0003139.1_g000043
rosa_roxburghii	Rroxscaffold_7G00178210
rosa_rugosa	Rorug06G0257800
rosa_samantha	Rh6BG378100 Rh6CG383600 Rh6DG370600
rosa_wichuraiana	Rw6G032300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	69, 209
AclWI	GGATC	2 cut(s)	299, 312
AcsI	RAATTY	1 cut(s)	10
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	3 cut(s)	74, 75, 133
AflIII	ACRYGT	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	1 cut(s)	108
AluI	AGCT	1 cut(s)	108
Alw26I	GTCTC	2 cut(s)	168, 243
AlwI	GGATC	2 cut(s)	299, 312
AlwNI	CAGNNNCTG	1 cut(s)	148
AoxI	GGCC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	10
AspS9I	GGNCC	3 cut(s)	4, 114, 187
AsuC2I	CCSGG	2 cut(s)	94, 117
AsuHPI	GGTGA	1 cut(s)	148
AvaII	GGWCC	2 cut(s)	4, 187
BamHI	GGATCC	1 cut(s)	304
BccI	CCATC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	143
BcnI	CCSGG	2 cut(s)	94, 117
BcoDI	GTCTC	2 cut(s)	168, 243
Bme1390I	CCNGG	3 cut(s)	94, 117, 143
Bme18I	GGWCC	2 cut(s)	4, 187
BmgT120I	GGNCC	3 cut(s)	4, 114, 187
BmiI	GGNNCC	3 cut(s)	6, 189, 306
BmrFI	CCNGG	3 cut(s)	94, 117, 143
BpuMI	CCSGG	2 cut(s)	94, 117
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	141, 308
BsaWI	WCCGGW	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 75, 133
Bse118I	RCCGGY	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	141, 308
BseLI	CCNNNNNNNGG	3 cut(s)	74, 75, 133
BseMII	CTCAG	2 cut(s)	254, 278
BseRI	GAGGAG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	115
BsiSI	CCGG	4 cut(s)	50, 94, 117, 134
BslI	CCNNNNNNNGG	3 cut(s)	74, 75, 133
BsmAI	GTCTC	2 cut(s)	168, 243
BsmBI	CGTCTC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	115
Bso31I	GGTCTC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	304
BspACI	CCGC	2 cut(s)	69, 209
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	2 cut(s)	253, 279
BspLI	GGNNCC	3 cut(s)	6, 189, 306
BspPI	GGATC	2 cut(s)	299, 312
BspTNI	GGTCTC	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	2 cut(s)	141, 308
BssMI	GATC	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	150
BstDEI	CTNAG	2 cut(s)	240, 287
BstEII	GGTNACC	1 cut(s)	136
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	2 cut(s)	168, 243
BstMBI	GATC	1 cut(s)	304
BstNI	CCWGG	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	172
BstPI	GGTNACC	1 cut(s)	136
BstSCI	CCNGG	3 cut(s)	92, 115, 141
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	146, 273
CaiI	CAGNNNCTG	1 cut(s)	148
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	3 cut(s)	4, 114, 187
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	4 cut(s)	100, 108, 115, 181
CviKI_1	RGCY	4 cut(s)	100, 108, 115, 181
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	2 cut(s)	240, 287
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	308
Eco31I	GGTCTC	1 cut(s)	168
Eco47I	GGWCC	2 cut(s)	4, 187
Eco91I	GGTNACC	1 cut(s)	136
EcoO65I	GGTNACC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	308
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	1 cut(s)	172
FaiI	YATR	2 cut(s)	170, 284
FatI	CATG	1 cut(s)	168
FauI	CCCGC	1 cut(s)	76
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	4 cut(s)	50, 94, 117, 134
HgaI	GACGC	1 cut(s)	209
Hin1II	CATG	1 cut(s)	172
HinfI	GANTC	2 cut(s)	83, 232
HpaII	CCGG	4 cut(s)	50, 94, 117, 134
HphI	GGTGA	1 cut(s)	148
Hpy188I	TCNGA	2 cut(s)	82, 243
Hpy188III	TCNNGA	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	1 cut(s)	150
HpyF3I	CTNAG	2 cut(s)	240, 287
Hsp92II	CATG	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	2 cut(s)	208, 292
LpnPI	CCDG	9 cut(s)	63, 107, 128, 130, 147, 155, 207, 232, 286
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MflI	RGATCY	1 cut(s)	304
MluCI	AATT	7 cut(s)	10, 25, 31, 218, 255, 265, 313
MlyI	GAGTC	2 cut(s)	77, 226
MmeI	TCCRAC	2 cut(s)	60, 60
MnlI	CCTC	5 cut(s)	74, 153, 171, 216, 282
MspI	CCGG	4 cut(s)	50, 94, 117, 134
MspR9I	CCNGG	3 cut(s)	94, 117, 143
MvaI	CCWGG	1 cut(s)	143
NciI	CCSGG	2 cut(s)	94, 117
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	3 cut(s)	6, 189, 306
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	1 cut(s)	172
PciI	ACATGT	1 cut(s)	168
PflFI	GACNNNGTC	1 cut(s)	235
PleI	GAGTC	2 cut(s)	77, 226
PpsI	GAGTC	2 cut(s)	77, 226
PscI	ACATGT	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	141
PspEI	GGTNACC	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	3 cut(s)	6, 189, 306
PspPI	GGNCC	3 cut(s)	4, 114, 187
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	304
PsyI	GACNNNGTC	1 cut(s)	235
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	3 cut(s)	4, 114, 187
SchI	GAGTC	2 cut(s)	77, 226
ScrFI	CCNGG	3 cut(s)	94, 117, 143
SetI	ASST	2 cut(s)	110, 164
SgrAI	CRCCGGYG	1 cut(s)	133
SinI	GGWCC	2 cut(s)	4, 187
Sse9I	AATT	7 cut(s)	10, 25, 31, 218, 255, 265, 313
SsiI	CCGC	2 cut(s)	69, 209
StyD4I	CCNGG	3 cut(s)	92, 115, 141
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	174
TasI	AATT	7 cut(s)	10, 25, 31, 218, 255, 265, 313
TatI	WGTACW	1 cut(s)	297
TscAI	CASTG	2 cut(s)	153, 280
TseFI	GTSAC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	136
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	2 cut(s)	153, 280
Tth111I	GACNNNGTC	1 cut(s)	235
VpaK11BI	GGWCC	2 cut(s)	4, 187
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	1 cut(s)	172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.