Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8489943.1

Orthogroup ID

OG0011915

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2480

Gene Structure 2480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8489943.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

atgcatatgtgtggccactgcaagaagctggttccagagtatgaaaaagctgcatctatcttgagcagtaatgacccaccagtcattctagcaaaagttgatgcaaatgaggaagcaaacaaaggacttgcttctgaatatgatgttaagggtttccccacaatcaaaattctaagaaatggtgggaagattatccaggaatacaagggtcctcgtgaagccgatggtattgttacttatttgaagaaacaaagtggtccagcttctgttgaaataaagagtgctgatgatgcagctactgttattggtgaaaagaagatagttgttgttggtgtgtttgacaagttctctggagaggagtatgagaaattcttggctctagctcagaaattgcgttcagattatgaatttggtcacactcttgatgtaaagcacctaccccgtggtgattcatctgtgactgggccagtagttagactgttcaagccatttgatgaactttttgttgatttcaaggaattcaatgtagaggctctagagaagttcattgaagaatctagcttgccagttattacagaattcaacaatgacccagacaaccacccttttgttatcaagttcttcaatgttccaaatgataaggctatgttgtttctgaacttcagcagtgatgttgctgatgctttgaaatcaaagtatcgtgaagtagctgagaaatacaaaggagaaggcataagctttttagttggagatctagaggctagtcaaggtgccttccagtactttggacttaaagaagaccaagtgcctctcatcatcatacagaccaatgacggacaaaagtttttgaaaccacatttggagccagatcatatttcagtttgggtgaaggaatacaaggatgggaaagtatcaccatacaagaagtctgaacccatccctgagaagaacgatgaccctgttaaagttgtagtcgctgagagcctccaggacattgttttcaagtctgggaaaaatgtgctgctcgagttttatgctccatggtgtggacactgcaagaagcttgcaccaatcttggatgaagttgctgtatcatttgaaaaggatcctgaagttgttattgcaaagttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000323 GO:0000325 GO:0000326 GO:0000327 GO:0003006 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005794 GO:0005886 GO:0006457 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010109 GO:0010154 GO:0010205 GO:0010941 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019222 GO:0022414 GO:0030312 GO:0031090 GO:0031323 GO:0031324 GO:0031974 GO:0032501 GO:0032502 GO:0033554 GO:0034975 GO:0034976 GO:0042221 GO:0042548 GO:0043067 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043467 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0071944 GO:0098588 GO:0098805 GO:0140096 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

377

Amino Acids

42.19

Weight (kDa)

5.32

Isoelectric Point (pI)

30.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21750 AT1G21750 AT1G77510
fragaria_vesca	FvH4_2g27200
malus_domestica	MD08G1161100.v1.1 MD15G1346200.v1.1
prunus_persica	Prupe.1G494100_v2.0.a1
pyrus_communis	pycom08g13850 pycom15g31030
rosa_chinensis	RchiOBHm_Chr6g0296111
rosa_laevigata	RLG00000011730
rosa_multiflora	Rmu_co8489943.1_g000001 Rmu_sc0003139.1_g000043
rosa_roxburghii	Rroxscaffold_7G00178210
rosa_rugosa	Rorug06G0257800
rosa_samantha	Rh6BG378100 Rh6CG383600 Rh6DG370600
rosa_wichuraiana	Rw6G032300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AccB1I	GGYRCC	1 cut(s)	770
AccB7I	CCANNNNNTGG	1 cut(s)	1046
AclWI	GGATC	2 cut(s)	1100, 1113
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	5 cut(s)	168, 368, 407, 518, 578
AcuI	CTGAAG	2 cut(s)	646, 1131
AfaI	GTAC	1 cut(s)	782
AfiI	CCNNNNNNNGG	1 cut(s)	1046
AjnI	CCWGG	2 cut(s)	195, 987
AjuI	GAANNNNNNNTTGG	2 cut(s)	842, 874
AluBI	AGCT	9 cut(s)	28, 50, 263, 296, 383, 561, 710, 738, 1063
AluI	AGCT	9 cut(s)	28, 50, 263, 296, 383, 561, 710, 738, 1063
AlwI	GGATC	2 cut(s)	1100, 1113
AlwNI	CAGNNNCTG	2 cut(s)	266, 299
Ama87I	CYCGRG	1 cut(s)	1025
AoxI	GGCC	2 cut(s)	13, 464
ApeKI	GCWGC	3 cut(s)	50, 293, 1021
ApoI	RAATTY	5 cut(s)	168, 368, 407, 518, 578
AspS9I	GGNCC	3 cut(s)	209, 257, 464
AsuHPI	GGTGA	4 cut(s)	320, 458, 898, 906
AvaI	CYCGRG	1 cut(s)	1025
AvaII	GGWCC	2 cut(s)	209, 257
BalI	TGGCCA	1 cut(s)	15
BamHI	GGATCC	1 cut(s)	1105
BanI	GGYRCC	1 cut(s)	770
BauI	CACGAG	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	804
BbvI	GCAGC	3 cut(s)	37, 305, 1008
BccI	CCATC	3 cut(s)	218, 896, 944
BcgI	CGANNNNNNTGC	2 cut(s)	1016, 1050
BciT130I	CCWGG	2 cut(s)	197, 989
BfaI	CTAG	6 cut(s)	89, 380, 536, 558, 755, 762
BglII	AGATCT	1 cut(s)	751
BisI	GCNGC	3 cut(s)	51, 294, 1022
BlsI	GCNGC	3 cut(s)	52, 295, 1023
BmcAI	AGTACT	1 cut(s)	782
Bme1390I	CCNGG	2 cut(s)	197, 989
Bme18I	GGWCC	2 cut(s)	209, 257
BmeT110I	CYCGRG	1 cut(s)	1025
BmgT120I	GGNCC	3 cut(s)	209, 257, 464
BmiI	GGNNCC	5 cut(s)	33, 210, 772, 864, 1107
BmrFI	CCNGG	2 cut(s)	197, 989
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	4 cut(s)	62, 91, 280, 670
BmuI	ACTGGG	1 cut(s)	471
BpiI	GAAGAC	1 cut(s)	804
BpmI	CTGGAG	2 cut(s)	372, 971
BpuEI	CTTGAG	1 cut(s)	82
BsaJI	CCNNGG	2 cut(s)	442, 1040
Bsc4I	CCNNNNNNNGG	1 cut(s)	1046
Bse1I	ACTGG	5 cut(s)	80, 466, 467, 566, 778
BseBI	CCWGG	2 cut(s)	197, 989
BseDI	CCNNGG	2 cut(s)	442, 1040
BseGI	GGATG	3 cut(s)	907, 936, 1084
BseLI	CCNNNNNNNGG	1 cut(s)	1046
BseMII	CTCAG	4 cut(s)	398, 702, 933, 969
BseNI	ACTGG	5 cut(s)	80, 466, 467, 566, 778
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	3 cut(s)	37, 305, 1008
BshFI	GGCC	2 cut(s)	15, 466
BshNI	GGYRCC	1 cut(s)	770
BsiHKCI	CYCGRG	1 cut(s)	1025
BslI	CCNNNNNNNGG	1 cut(s)	1046
BsnI	GGCC	2 cut(s)	15, 466
BsoBI	CYCGRG	1 cut(s)	1025
Bsp143I	GATC	3 cut(s)	751, 868, 1105
Bsp19I	CCATGG	1 cut(s)	1040
BspANI	GGCC	2 cut(s)	15, 466
BspCNI	CTCAG	4 cut(s)	397, 703, 934, 970
BspLI	GGNNCC	5 cut(s)	33, 210, 772, 864, 1107
BspPI	GGATC	2 cut(s)	1100, 1113
BspT107I	GGYRCC	1 cut(s)	770
BsrI	ACTGG	5 cut(s)	80, 466, 467, 566, 778
BssECI	CCNNGG	2 cut(s)	442, 1040
BssMI	GATC	3 cut(s)	751, 868, 1105
BssSI	CACGAG	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	1040
Bst2BI	CACGAG	1 cut(s)	213
Bst2UI	CCWGG	2 cut(s)	197, 989
Bst4CI	ACNGT	2 cut(s)	301, 480
BstC8I	GCNNGC	2 cut(s)	563, 1065
BstDEI	CTNAG	5 cut(s)	173, 384, 711, 942, 978
BstDSI	CCRYGG	2 cut(s)	442, 1040
BstF5I	GGATG	3 cut(s)	907, 936, 1084
BstKTI	GATC	3 cut(s)	754, 871, 1108
BstMBI	GATC	3 cut(s)	751, 868, 1105
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	2 cut(s)	197, 989
BstSCI	CCNGG	2 cut(s)	195, 987
BstV1I	GCAGC	3 cut(s)	37, 305, 1008
BstV2I	GAAGAC	1 cut(s)	804
BstX2I	RGATCY	2 cut(s)	751, 1105
BstXI	CCANNNNNNTGG	1 cut(s)	785
BstYI	RGATCY	2 cut(s)	751, 1105
BsuRI	GGCC	2 cut(s)	15, 466
BtgI	CCRYGG	2 cut(s)	442, 1040
BtsCI	GGATG	3 cut(s)	907, 936, 1084
BtsI	GCAGTG	3 cut(s)	16, 673, 1051
BtsIMutI	CAGTG	3 cut(s)	16, 673, 1051
Cac8I	GCNNGC	2 cut(s)	563, 1065
CaiI	CAGNNNCTG	2 cut(s)	266, 299
Cfr13I	GGNCC	3 cut(s)	209, 257, 464
Csp6I	GTAC	1 cut(s)	781
CviAII	CATG	1 cut(s)	1041
CviQI	GTAC	1 cut(s)	781
DdeI	CTNAG	5 cut(s)	173, 384, 711, 942, 978
DpnI	GATC	3 cut(s)	753, 870, 1107
DpnII	GATC	3 cut(s)	751, 868, 1105
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
EaeI	YGGCCR	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	1040
Eco47I	GGWCC	2 cut(s)	209, 257
Eco57I	CTGAAG	2 cut(s)	646, 1131
Eco88I	CYCGRG	1 cut(s)	1025
EcoO109I	RGGNCCY	1 cut(s)	209
EcoRI	GAATTC	2 cut(s)	518, 578
EcoRII	CCWGG	2 cut(s)	195, 987
EcoT14I	CCWWGG	1 cut(s)	1040
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	1040
FaeI	CATG	1 cut(s)	1044
FatI	CATG	1 cut(s)	1040
FauNDI	CATATG	1 cut(s)	6
Fnu4HI	GCNGC	3 cut(s)	51, 294, 1022
FokI	GGATG	3 cut(s)	914, 923, 1091
Fsp4HI	GCNGC	3 cut(s)	51, 294, 1022
FspBI	CTAG	6 cut(s)	89, 380, 536, 558, 755, 762
GluI	GCNGC	3 cut(s)	51, 294, 1022
GsuI	CTGGAG	2 cut(s)	372, 971
HaeIII	GGCC	2 cut(s)	15, 466
Hin1II	CATG	1 cut(s)	1044
HindIII	AAGCTT	2 cut(s)	736, 1061
HinfI	GANTC	2 cut(s)	449, 554
HphI	GGTGA	4 cut(s)	320, 458, 898, 906
Hpy166II	GTNNAC	1 cut(s)	1049
Hpy188I	TCNGA	5 cut(s)	136, 387, 400, 657, 931
Hpy188III	TCNNGA	9 cut(s)	35, 61, 215, 351, 422, 536, 701, 755, 1109
Hpy8I	GTNNAC	1 cut(s)	1049
HpyAV	CCTTC	3 cut(s)	722, 784, 883
HpyCH4III	ACNGT	2 cut(s)	301, 480
HpyCH4V	TGCA	8 cut(s)	4, 21, 53, 104, 293, 1056, 1067, 1124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	5 cut(s)	173, 384, 711, 942, 978
Hsp92II	CATG	1 cut(s)	1044
Kzo9I	GATC	3 cut(s)	751, 868, 1105
LmnI	GCTCC	2 cut(s)	862, 1042
Lsp1109I	GCAGC	3 cut(s)	37, 305, 1008
LweI	GCATC	4 cut(s)	62, 91, 280, 670
MaeI	CTAG	6 cut(s)	89, 380, 536, 558, 755, 762
MaeIII	GTNAC	3 cut(s)	232, 413, 457
MalI	GATC	3 cut(s)	753, 870, 1107
MboI	GATC	3 cut(s)	751, 868, 1105
MboII	GAAGA	7 cut(s)	199, 256, 328, 563, 613, 809, 958
MflI	RGATCY	2 cut(s)	751, 1105
MlsI	TGGCCA	1 cut(s)	15
MluCI	AATT	6 cut(s)	168, 368, 389, 407, 518, 578
MluNI	TGGCCA	1 cut(s)	15
MmeI	TCCRAC	1 cut(s)	727
MnlI	CCTC	7 cut(s)	103, 222, 349, 523, 751, 819, 995
Mox20I	TGGCCA	1 cut(s)	15
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	15
MseI	TTAA	3 cut(s)	147, 792, 963
MslI	CAYNNNNRTG	1 cut(s)	9
Msp20I	TGGCCA	1 cut(s)	15
MspR9I	CCNGG	2 cut(s)	197, 989
MvaI	CCWGG	2 cut(s)	197, 989
MwoI	GCNNNNNNNGC	1 cut(s)	290
NcoI	CCATGG	1 cut(s)	1040
NdeI	CATATG	1 cut(s)	6
NdeII	GATC	3 cut(s)	751, 868, 1105
NlaIII	CATG	1 cut(s)	1044
NlaIV	GGNNCC	5 cut(s)	33, 210, 772, 864, 1107
NmuCI	GTSAC	2 cut(s)	413, 457
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	1025
PfeI	GAWTC	2 cut(s)	449, 554
PflMI	CCANNNNNTGG	1 cut(s)	1046
PfoI	TCCNGGA	2 cut(s)	195, 987
PkrI	GCNGC	3 cut(s)	52, 295, 1023
PpuMI	RGGWCCY	1 cut(s)	209
Psp5II	RGGWCCY	1 cut(s)	209
Psp6I	CCWGG	2 cut(s)	195, 987
PspGI	CCWGG	2 cut(s)	195, 987
PspN4I	GGNNCC	5 cut(s)	33, 210, 772, 864, 1107
PspPI	GGNCC	3 cut(s)	209, 257, 464
PspPPI	RGGWCCY	1 cut(s)	209
PspXI	VCTCGAGB	1 cut(s)	1025
PstNI	CAGNNNCTG	2 cut(s)	266, 299
PsuI	RGATCY	2 cut(s)	751, 1105
RsaI	GTAC	1 cut(s)	782
RsaNI	GTAC	1 cut(s)	781
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	147, 792, 963
SatI	GCNGC	3 cut(s)	51, 294, 1022
Sau3AI	GATC	3 cut(s)	751, 868, 1105
Sau96I	GGNCC	3 cut(s)	209, 257, 464
ScaI	AGTACT	1 cut(s)	782
ScrFI	CCNGG	2 cut(s)	197, 989
SfaNI	GCATC	4 cut(s)	62, 91, 280, 670
Sfr274I	CTCGAG	1 cut(s)	1025
SinI	GGWCC	2 cut(s)	209, 257
SlaI	CTCGAG	1 cut(s)	1025
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	2 cut(s)	61, 1025
SmoI	CTYRAG	2 cut(s)	61, 1025
Sse9I	AATT	6 cut(s)	168, 368, 389, 407, 518, 578
SspMI	CTAG	6 cut(s)	89, 380, 536, 558, 755, 762
StyD4I	CCNGG	2 cut(s)	195, 987
StyI	CCWWGG	1 cut(s)	1040
TaaI	ACNGT	2 cut(s)	301, 480
TaqI	TCGA	1 cut(s)	1026
TasI	AATT	6 cut(s)	168, 368, 389, 407, 518, 578
TatI	WGTACW	1 cut(s)	780
TfiI	GAWTC	2 cut(s)	449, 554
Tru1I	TTAA	3 cut(s)	147, 792, 963
Tru9I	TTAA	3 cut(s)	147, 792, 963
TscAI	CASTG	3 cut(s)	23, 673, 1058
TseFI	GTSAC	2 cut(s)	413, 457
TseI	GCWGC	3 cut(s)	50, 293, 1021
Tsp45I	GTSAC	2 cut(s)	413, 457
TspDTI	ATGAA	6 cut(s)	57, 420, 441, 510, 535, 1095
TspGWI	ACGGA	1 cut(s)	849
TspRI	CASTG	3 cut(s)	23, 673, 1058
Van91I	CCANNNNNTGG	1 cut(s)	1046
VpaK11BI	GGWCC	2 cut(s)	209, 257
XapI	RAATTY	5 cut(s)	168, 368, 407, 518, 578
XbaI	TCTAGA	2 cut(s)	535, 754
XhoI	CTCGAG	1 cut(s)	1025
XspI	CTAG	6 cut(s)	89, 380, 536, 558, 755, 762
ZrmI	AGTACT	1 cut(s)	782
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.