Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0011915

Physical Location & Seq

Genomic Coordinates Reverse (-)

57051883 .. 57056114

Gene Structure 4232 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG383600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCGTCCTCTAGGGTTTTGCTCTGCTTCTCCTTGCTCGTCGCTCTGTGCTTCACTGCGATCCACGCCGACGAGGCTGATTCGAAGGAGTTCGTGCTCACTTTGGACAGCTCCAACTTCTCTGACACTGTCAGCAAGCACGACTTCGTCGTTGTCGAGTTCTACGCCCCATGGTGTGGCCACTGCAAGAAGCTGGTTCCAGAGTATGAAAAAGCTGCATCTATCTTGAGCAGTAATGACCCACCAGTCATTCTAGCAAAAGTTGATGCAAATGAGGAAGCAAACAAAGGACTTGCTTCTGAATATGATGTTAAGGGTTTCCCCACAATCAAAATTCTAAGAAATGGTGGGAAGATTATCCAGGAATACAAGGGTCCTCGTGAAGCCGATGGTATTGTTACTTATTTGAAGAAACAAAGTGGTCCAGCTTCCGTTGAAATAAAGAGTGCTGATGATGCAACCACTGTTATTGGTGAAAAGAAGATAGTTGTTGTTGGTGTGTTTGACAAGTTCTCTGGAGAGGAGTATGAGAAATTCTTGGCTCTAGCTCAGAAATTGCGTTCAGATTATGAATTTGGTCACACTCTTGATGCAAAGCACCTACCCCGTGGTGATTCATCTGTGACTGGGCCAGTAGTTAGACTGTTCAAGCCATTTGATGAACTTTTTGTTGATTTCAAGGAATTCAATGTAGAGGCTCTAGAGAAGTTCATTGAAGAATCTAGCTCGCCAGCTGTTACAGAATTCAACAATGACCCAGACAACCACCCTTTTGTTATCAAGTTCTTCAATGGTCCAAATGATAAGGCTATGTTGTTTCTGAACTTCAGCAGTGATGTTGCTGATGCTTTTAAATCAAAGTATCGTGAAGTAGCTGAGAAATACAAAGGAGAAGGCATAAGCTTTTTAGTTGGAGATGTAGAGGCTAGTCAAGGTGCCTTCCAGTACTTTGGACTTAAAGAAGACCAAGTGCCTCTCATCATCATACAGACCAATGACGGACAAAAGTTTTTGAAACCACATTTGGAGCCAGATCATATTTCAGTTTGGGTGAAGGAATACAAGGTGAGGCTTCTACTTCTGTCTTGCAAGGGATCATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000323 GO:0000325 GO:0000326 GO:0000327 GO:0003006 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005794 GO:0005886 GO:0006457 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010109 GO:0010154 GO:0010205 GO:0010941 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019222 GO:0022414 GO:0030312 GO:0031090 GO:0031323 GO:0031324 GO:0031974 GO:0032501 GO:0032502 GO:0033554 GO:0034975 GO:0034976 GO:0042221 GO:0042548 GO:0043067 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043467 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0071944 GO:0098588 GO:0098805 GO:0140096 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

367

Amino Acids

40.93

Weight (kDa)

5.21

Isoelectric Point (pI)

26.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	32 - 138	3.1e-28	Thioredoxin
Thioredoxin_2	PF13098	47 - 128	7.1e-07	Thioredoxin-like domain
Thioredoxin_6	PF13848	168 - 352	7e-25	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21750 AT1G21750 AT1G77510
fragaria_vesca	FvH4_2g27200
malus_domestica	MD08G1161100.v1.1 MD15G1346200.v1.1
prunus_persica	Prupe.1G494100_v2.0.a1
pyrus_communis	pycom08g13850 pycom15g31030
rosa_chinensis	RchiOBHm_Chr6g0296111
rosa_laevigata	RLG00000011730
rosa_multiflora	Rmu_co8489943.1_g000001 Rmu_sc0003139.1_g000043
rosa_roxburghii	Rroxscaffold_7G00178210
rosa_rugosa	Rorug06G0257800
rosa_samantha	Rh6BG378100 Rh6CG383600 Rh6DG370600
rosa_wichuraiana	Rw6G032300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	935
AccB7I	CCANNNNNTGG	1 cut(s)	176
AclWI	GGATC	2 cut(s)	55, 1102
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	5 cut(s)	333, 533, 572, 683, 743
AcuI	CTGAAG	1 cut(s)	811
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	947
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgsI	TTSAA	9 cut(s)	409, 437, 649, 679, 688, 716, 748, 790, 1015
AjnI	CCWGG	1 cut(s)	360
AjuI	GAANNNNNNNTTGG	2 cut(s)	1007, 1039
AluBI	AGCT	9 cut(s)	111, 193, 215, 428, 548, 726, 734, 875, 903
AluI	AGCT	9 cut(s)	111, 193, 215, 428, 548, 726, 734, 875, 903
Alw21I	GWGCWC	1 cut(s)	99
AlwI	GGATC	2 cut(s)	55, 1102
AoxI	GGCC	2 cut(s)	178, 629
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	5 cut(s)	333, 533, 572, 683, 743
Asp700I	GAANNNNTTC	1 cut(s)	89
AspS9I	GGNCC	4 cut(s)	374, 422, 629, 794
AsuHPI	GGTGA	4 cut(s)	485, 623, 1063, 1078
AsuII	TTCGAA	1 cut(s)	83
AvaII	GGWCC	3 cut(s)	374, 422, 794
BalI	TGGCCA	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	935
BauI	CACGAG	1 cut(s)	378
BbsI	GAAGAC	1 cut(s)	969
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	1 cut(s)	383
BciT130I	CCWGG	1 cut(s)	362
BfaI	CTAG	6 cut(s)	12, 254, 545, 701, 723, 927
BglI	GCCNNNNNGGC	1 cut(s)	74
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
BmcAI	AGTACT	1 cut(s)	947
Bme1390I	CCNGG	1 cut(s)	362
Bme18I	GGWCC	3 cut(s)	374, 422, 794
BmgT120I	GGNCC	4 cut(s)	374, 422, 629, 794
BmiI	GGNNCC	4 cut(s)	198, 375, 937, 1029
BmrFI	CCNGG	1 cut(s)	362
BmrI	ACTGGG	1 cut(s)	636
BmsI	GCATC	5 cut(s)	227, 256, 445, 580, 835
BmuI	ACTGGG	1 cut(s)	636
BpiI	GAAGAC	1 cut(s)	969
BpmI	CTGGAG	1 cut(s)	537
Bpu14I	TTCGAA	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	247
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	170, 607
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse1I	ACTGG	4 cut(s)	245, 631, 632, 943
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	2 cut(s)	170, 607
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMII	CTCAG	2 cut(s)	563, 867
BseNI	ACTGG	4 cut(s)	245, 631, 632, 943
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	1 cut(s)	202
BshFI	GGCC	2 cut(s)	180, 631
BshNI	GGYRCC	1 cut(s)	935
BsiHKAI	GWGCWC	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	176
BsnI	GGCC	2 cut(s)	180, 631
Bsp119I	TTCGAA	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	60, 1033, 1094
Bsp19I	CCATGG	1 cut(s)	170
BspANI	GGCC	2 cut(s)	180, 631
BspCNI	CTCAG	2 cut(s)	562, 868
BspLI	GGNNCC	4 cut(s)	198, 375, 937, 1029
BspPI	GGATC	2 cut(s)	55, 1102
BspT104I	TTCGAA	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	935
BsrI	ACTGG	4 cut(s)	245, 631, 632, 943
BssECI	CCNNGG	2 cut(s)	170, 607
BssMI	GATC	3 cut(s)	60, 1033, 1094
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	378
BssT1I	CCWWGG	1 cut(s)	170
Bst2BI	CACGAG	1 cut(s)	378
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	3 cut(s)	130, 466, 645
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	3 cut(s)	137, 728, 732
BstDEI	CTNAG	3 cut(s)	338, 549, 876
BstDSI	CCRYGG	2 cut(s)	170, 607
BstKTI	GATC	3 cut(s)	63, 1036, 1097
BstMBI	GATC	3 cut(s)	60, 1033, 1094
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 74, 455
BstNI	CCWGG	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	202
BstV2I	GAAGAC	1 cut(s)	969
BstXI	CCANNNNNNTGG	1 cut(s)	950
BsuRI	GGCC	2 cut(s)	180, 631
BtgI	CCRYGG	2 cut(s)	170, 607
BtsI	GCAGTG	3 cut(s)	54, 181, 838
BtsIMutI	CAGTG	5 cut(s)	54, 126, 181, 462, 838
Cac8I	GCNNGC	3 cut(s)	137, 728, 732
Cfr13I	GGNCC	4 cut(s)	374, 422, 629, 794
Csp6I	GTAC	1 cut(s)	946
CspCI	CAANNNNNGTGG	2 cut(s)	451, 486
CviAII	CATG	1 cut(s)	171
CviQI	GTAC	1 cut(s)	946
DdeI	CTNAG	3 cut(s)	338, 549, 876
DpnI	GATC	3 cut(s)	62, 1035, 1096
DpnII	GATC	3 cut(s)	60, 1033, 1094
DraI	TTTAAA	1 cut(s)	853
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
EaeI	YGGCCR	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	170
Eco47I	GGWCC	3 cut(s)	374, 422, 794
Eco57I	CTGAAG	1 cut(s)	811
EcoO109I	RGGNCCY	1 cut(s)	374
EcoRI	GAATTC	2 cut(s)	683, 743
EcoRII	CCWGG	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	170
FaeI	CATG	1 cut(s)	174
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FatI	CATG	1 cut(s)	170
Fnu4HI	GCNGC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	6 cut(s)	12, 254, 545, 701, 723, 927
GluI	GCNGC	1 cut(s)	216
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	2 cut(s)	180, 631
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	901
HinfI	GANTC	3 cut(s)	80, 614, 719
HphI	GGTGA	4 cut(s)	485, 623, 1063, 1078
Hpy188I	TCNGA	5 cut(s)	124, 301, 552, 565, 822
Hpy188III	TCNNGA	7 cut(s)	200, 226, 380, 516, 587, 701, 866
Hpy99I	CGWCG	3 cut(s)	44, 74, 152
HpyAV	CCTTC	4 cut(s)	79, 887, 949, 1048
HpyCH4III	ACNGT	3 cut(s)	130, 466, 645
HpyCH4V	TGCA	6 cut(s)	186, 218, 269, 458, 593, 1089
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 74, 455
HpyF3I	CTNAG	3 cut(s)	338, 549, 876
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	174
Kzo9I	GATC	3 cut(s)	60, 1033, 1094
LmnI	GCTCC	2 cut(s)	116, 1027
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	5 cut(s)	227, 256, 445, 580, 835
MaeI	CTAG	6 cut(s)	12, 254, 545, 701, 723, 927
MaeIII	GTNAC	4 cut(s)	397, 578, 622, 736
MalI	GATC	3 cut(s)	62, 1035, 1096
MboI	GATC	3 cut(s)	60, 1033, 1094
MboII	GAAGA	6 cut(s)	364, 421, 493, 728, 778, 974
MhlI	GDGCHC	1 cut(s)	99
MlsI	TGGCCA	1 cut(s)	180
MluCI	AATT	6 cut(s)	333, 533, 554, 572, 683, 743
MluNI	TGGCCA	1 cut(s)	180
MmeI	TCCRAC	2 cut(s)	138, 892
MnlI	CCTC	9 cut(s)	19, 67, 268, 387, 514, 688, 916, 984, 1062
Mox20I	TGGCCA	1 cut(s)	180
MroXI	GAANNNNTTC	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	180
MseI	TTAA	4 cut(s)	312, 852, 957, 1102
Msp20I	TGGCCA	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	734
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	3 cut(s)	65, 74, 455
NcoI	CCATGG	1 cut(s)	170
NdeII	GATC	3 cut(s)	60, 1033, 1094
NlaIII	CATG	1 cut(s)	174
NlaIV	GGNNCC	4 cut(s)	198, 375, 937, 1029
NmuCI	GTSAC	2 cut(s)	578, 622
NspV	TTCGAA	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 153
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	3 cut(s)	80, 614, 719
PflFI	GACNNNGTC	2 cut(s)	128, 146
PflMI	CCANNNNNTGG	1 cut(s)	176
PfoI	TCCNGGA	1 cut(s)	360
PkrI	GCNGC	1 cut(s)	217
PpuMI	RGGWCCY	1 cut(s)	374
Psp5II	RGGWCCY	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	4 cut(s)	198, 375, 937, 1029
PspPI	GGNCC	4 cut(s)	374, 422, 629, 794
PspPPI	RGGWCCY	1 cut(s)	374
PsyI	GACNNNGTC	2 cut(s)	128, 146
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	1 cut(s)	947
RsaNI	GTAC	1 cut(s)	946
SaqAI	TTAA	4 cut(s)	312, 852, 957, 1102
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	3 cut(s)	60, 1033, 1094
Sau96I	GGNCC	4 cut(s)	374, 422, 629, 794
ScaI	AGTACT	1 cut(s)	947
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	99
SfaNI	GCATC	5 cut(s)	227, 256, 445, 580, 835
SfuI	TTCGAA	1 cut(s)	83
SinI	GGWCC	3 cut(s)	374, 422, 794
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	6 cut(s)	333, 533, 554, 572, 683, 743
SspMI	CTAG	6 cut(s)	12, 254, 545, 701, 723, 927
StyD4I	CCNGG	1 cut(s)	360
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	3 cut(s)	130, 466, 645
TaqI	TCGA	2 cut(s)	83, 156
TasI	AATT	6 cut(s)	333, 533, 554, 572, 683, 743
TatI	WGTACW	1 cut(s)	945
TfiI	GAWTC	3 cut(s)	80, 614, 719
Tru1I	TTAA	4 cut(s)	312, 852, 957, 1102
Tru9I	TTAA	4 cut(s)	312, 852, 957, 1102
TscAI	CASTG	5 cut(s)	61, 133, 188, 469, 838
TseFI	GTSAC	2 cut(s)	578, 622
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	2 cut(s)	578, 622
TspDTI	ATGAA	5 cut(s)	222, 585, 606, 675, 700
TspGWI	ACGGA	2 cut(s)	421, 1014
TspRI	CASTG	5 cut(s)	61, 133, 188, 469, 838
Tth111I	GACNNNGTC	2 cut(s)	128, 146
Van91I	CCANNNNNTGG	1 cut(s)	176
VpaK11BI	GGWCC	3 cut(s)	374, 422, 794
XapI	RAATTY	5 cut(s)	333, 533, 572, 683, 743
XbaI	TCTAGA	1 cut(s)	700
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	6 cut(s)	12, 254, 545, 701, 723, 927
ZrmI	AGTACT	1 cut(s)	947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.