FvH4_2g30090

2Fe-2S iron-sulfur cluster binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011017
Physical Location & Seq
Forward (+)
23297547 .. 23300154
2608 bp
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UTR
Exon/CDS
Intron
FvH4_2g30090.t1

Sequence Viewer

Length: 429 bp
ATGGCTTGCATGCACCTCACAAACGCCATGTCGTTCCGGCCGGAGCGATTCTCCGGCGCCGGAAAATACCACAAGCCAGCTGATTTTCTTCCGAGAAGGAAATCGGTCTTAATCTCCTGCGCCGGAAGTTCGCCGGAATCGCCACCGAGTAAGCCGGAAATTGAGCTCGAATTTATAGCGCCGAAGCCGGAGAACGACGGGTCGTACGCGGTGGAGAAGGCGACGGCGATAAGTGGGGAGAAGCTCCTGAGGAGCATAATGAAGGATAACAAGATCGAGCTTTACGCCACGTATGGGAAACTGATGAACTGTGGAGGTGGTGGAAGCTGTGGGACTTGTATTGTAGAGATTATTGATGGGAAGGATCTTTTAAATGAAAGAACGAATGCTGAACTCAAATATTTGAAAAAGGCAAGTCTCTCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fer2

Protein Analysis

143

Amino Acids

15.46

Weight (kDa)

8.78

Isoelectric Point (pI)

64.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011017)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32590 AT4G32590 AT4G32590 AT4G32590 AT4G32590
fragaria_vesca FvH4_2g30090 FvH4_2g30090
malus_domestica MD15G1116000.v1.1
prunus_persica Prupe.1G467300_v2.0.a1
pyrus_communis pycom15g10460
rosa_chinensis RchiOBHm_Chr6g0312831
rosa_laevigata RLG00000010294
rosa_multiflora Rmu_co8502815.1_g000001
rosa_roxburghii Rroxscaffold_7G00156450
rosa_rugosa Rorug06G0399900
rosa_samantha Rh6AG517100 Rh6BG528500 Rh6CG533200 Rh6DG519700
rosa_wichuraiana Rw6G044920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AccII CGCG 1 cut(s) 209
AciI CCGC 1 cut(s) 209
AclWI GGATC 1 cut(s) 372
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 1 cut(s) 170
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 294
AgsI TTSAA 1 cut(s) 406
AluBI AGCT 5 cut(s) 80, 166, 244, 280, 327
AluI AGCT 5 cut(s) 80, 166, 244, 280, 327
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 1 cut(s) 372
AoxI GGCC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 170
ArsI GACNNNNNNTTYG 2 cut(s) 14, 46
AspLEI GCGC 3 cut(s) 59, 122, 181
AxyI CCTNAGG 1 cut(s) 248
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 168
BccI CCATC 1 cut(s) 350
BceAI ACGGC 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 422
BfoI RGCGCY 2 cut(s) 60, 182
BmiI GGNNCC 1 cut(s) 58
BplI GAGNNNNNCTC 2 cut(s) 35, 67
BsaAI YACGTR 1 cut(s) 291
BsaHI GRCGYC 1 cut(s) 57
Bsc4I CCNNNNNNNGG 1 cut(s) 294
Bse21I CCTNAGG 1 cut(s) 248
BseLI CCNNNNNNNGG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 239
BseRI GAGGAG 1 cut(s) 265
BseX3I CGGCCG 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 41
BshFI GGCC 1 cut(s) 40
BshNI GGYRCC 1 cut(s) 56
BsiEI CGRYCG 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 8 cut(s) 37, 41, 54, 60, 123, 134, 155, 188
BsiWI CGTACG 1 cut(s) 204
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 346
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 2 cut(s) 273, 364
BspACI CCGC 1 cut(s) 209
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 1 cut(s) 240
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 58
BspPI GGATC 1 cut(s) 372
BspT107I GGYRCC 1 cut(s) 56
BssMI GATC 2 cut(s) 273, 364
BssNI GRCGYC 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 311
BstACI GRCGYC 1 cut(s) 57
BstBAI YACGTR 1 cut(s) 291
BstC8I GCNNGC 3 cut(s) 7, 11, 78
BstDEI CTNAG 1 cut(s) 248
BstFNI CGCG 1 cut(s) 209
BstH2I RGCGCY 2 cut(s) 60, 182
BstHHI GCGC 3 cut(s) 59, 122, 181
BstKTI GATC 2 cut(s) 276, 367
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 2 cut(s) 273, 364
BstMCI CGRYCG 1 cut(s) 41
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 13
BstUI CGCG 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BstZI CGGCCG 1 cut(s) 38
Bsu36I CCTNAGG 1 cut(s) 248
BsuRI GGCC 1 cut(s) 40
Cac8I GCNNGC 3 cut(s) 7, 11, 78
CfoI GCGC 3 cut(s) 59, 122, 181
Csp6I GTAC 1 cut(s) 205
CviAII CATG 2 cut(s) 10, 28
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 248
DinI GGCGCC 1 cut(s) 58
DpnI GATC 2 cut(s) 275, 366
DpnII GATC 2 cut(s) 273, 364
DraI TTTAAA 1 cut(s) 372
EaeI YGGCCR 1 cut(s) 38
EagI CGGCCG 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 166
EclXI CGGCCG 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 168
Eco52I CGGCCG 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 166
Eco81I CCTNAGG 1 cut(s) 248
EcoICRI GAGCTC 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 168
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
FaeI CATG 2 cut(s) 13, 31
FaiI YATR 5 cut(s) 11, 29, 176, 257, 294
FaqI GGGAC 1 cut(s) 346
FatI CATG 2 cut(s) 9, 27
FriOI GRGCYC 1 cut(s) 168
GlaI GCGC 3 cut(s) 58, 121, 180
HaeII RGCGCY 2 cut(s) 60, 182
HaeIII GGCC 1 cut(s) 40
HapII CCGG 8 cut(s) 37, 41, 54, 60, 123, 134, 155, 188
HhaI GCGC 3 cut(s) 59, 122, 181
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 2 cut(s) 13, 31
Hin6I GCGC 3 cut(s) 57, 120, 179
HinP1I GCGC 3 cut(s) 57, 120, 179
HinfI GANTC 2 cut(s) 48, 137
HpaII CCGG 8 cut(s) 37, 41, 54, 60, 123, 134, 155, 188
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 1 cut(s) 247
Hpy99I CGWCG 2 cut(s) 200, 226
HpyAV CCTTC 4 cut(s) 90, 211, 256, 355
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4IV ACGT 1 cut(s) 290
HpyCH4V TGCA 2 cut(s) 9, 13
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpyF3I CTNAG 1 cut(s) 248
HpySE526I ACGT 1 cut(s) 290
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 2 cut(s) 13, 31
HspAI GCGC 3 cut(s) 57, 120, 179
KasI GGCGCC 1 cut(s) 56
Kzo9I GATC 2 cut(s) 273, 364
LmnI GCTCC 3 cut(s) 43, 249, 252
MaeII ACGT 1 cut(s) 290
MalI GATC 2 cut(s) 275, 366
MboI GATC 2 cut(s) 273, 364
MboII GAAGA 1 cut(s) 80
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 2 cut(s) 159, 170
Mly113I GGCGCC 1 cut(s) 57
MnlI CCTC 3 cut(s) 26, 243, 308
MseI TTAA 2 cut(s) 110, 371
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 8 cut(s) 37, 41, 54, 60, 123, 134, 155, 188
Mva1269I GAATGC 1 cut(s) 391
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 139
NarI GGCGCC 1 cut(s) 57
NdeII GATC 2 cut(s) 273, 364
NlaIII CATG 2 cut(s) 13, 31
NlaIV GGNNCC 1 cut(s) 58
NspI RCATGY 1 cut(s) 13
PaeI GCATGC 1 cut(s) 13
PctI GAATGC 1 cut(s) 391
PfeI GAWTC 2 cut(s) 48, 137
Pfl23II CGTACG 1 cut(s) 204
PluTI GGCGCC 1 cut(s) 60
Ppu21I YACGTR 1 cut(s) 291
Psp124BI GAGCTC 1 cut(s) 168
PspLI CGTACG 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 58
PsuI RGATCY 1 cut(s) 364
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 2 cut(s) 110, 371
Sau3AI GATC 2 cut(s) 273, 364
SduI GDGCHC 1 cut(s) 168
SetI ASST 8 cut(s) 18, 82, 168, 246, 282, 293, 319, 329
SfoI GGCGCC 1 cut(s) 58
SphI GCATGC 1 cut(s) 13
Sse9I AATT 2 cut(s) 159, 170
SsiI CCGC 1 cut(s) 209
SspDI GGCGCC 1 cut(s) 56
SspI AATATT 1 cut(s) 401
SstI GAGCTC 1 cut(s) 168
TaaI ACNGT 1 cut(s) 311
TaiI ACGT 1 cut(s) 293
TaqI TCGA 2 cut(s) 168, 276
TaqII GACCGA 1 cut(s) 94
TasI AATT 2 cut(s) 159, 170
TfiI GAWTC 2 cut(s) 48, 137
Tru1I TTAA 2 cut(s) 110, 371
Tru9I TTAA 2 cut(s) 110, 371
TspDTI ATGAA 3 cut(s) 275, 320, 390
XapI RAATTY 1 cut(s) 170
XceI RCATGY 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.