Prupe.1G467300_v2.0.a1

2Fe-2S iron-sulfur cluster binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011017
Physical Location & Seq
Reverse (-)
38938281 .. 38940912
2632 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G467300.1

Sequence Viewer

Length: 513 bp
ATGGCTTGCATGCAATTCACGAATGCCGTGTCGTTCCGGCCAGAGCAACTCTCCGGCGCCGGGACCCGAGATTACCAAACTCTCCCCAGAAGGAAGTCCGTTTCGGTCTCTTTCGCCGGTATTTCGGCAGAAATGTCTCCAGCTCAGCCCGGAAAGCCCGAAATCGAGCTCGAATTCATAGGGCCGAAGCCCGGGAACGACGGGTCGTATCCGGTGGAGAGCGCGAAGGCGATTAGTGGAGAGAAGTTGCTAAGGGATGTCATGTCGGATAACAAGATCGAGCTCTACGCCACGTATGGGAAACTGATGAACTGTGGAGGAGGAGGAAGCTGTGGGACTTGTATAGTAGAGATTATTGATGGGAAGGACCTTTTGAATGAAAGAACAAATACTGAACTCAAGTATTTGAAGAAGAAACCCGAATCTTGGAGACTTGCTTGTCAAACTATAGTTGGAAATAAGGAAAATTCTGGGAAGGTTGTGGTTCAGAGGATCCCCCAGTGGAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fer2

Protein Analysis

171

Amino Acids

18.61

Weight (kDa)

8.94

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011017)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32590 AT4G32590 AT4G32590 AT4G32590 AT4G32590
fragaria_vesca FvH4_2g30090 FvH4_2g30090
malus_domestica MD15G1116000.v1.1
prunus_persica Prupe.1G467300_v2.0.a1
pyrus_communis pycom15g10460
rosa_chinensis RchiOBHm_Chr6g0312831
rosa_laevigata RLG00000010294
rosa_multiflora Rmu_co8502815.1_g000001
rosa_roxburghii Rroxscaffold_7G00156450
rosa_rugosa Rorug06G0399900
rosa_samantha Rh6AG517100 Rh6BG528500 Rh6CG533200 Rh6DG519700
rosa_wichuraiana Rw6G044920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 438
AccB1I GGYRCC 1 cut(s) 56
AccII CGCG 1 cut(s) 224
AclWI GGATC 2 cut(s) 487, 500
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 2 cut(s) 173, 466
AcyI GRCGYC 1 cut(s) 57
AfiI CCNNNNNNNGG 4 cut(s) 60, 191, 297, 426
AgsI TTSAA 2 cut(s) 376, 409
AluBI AGCT 4 cut(s) 143, 169, 283, 330
AluI AGCT 4 cut(s) 143, 169, 283, 330
Alw21I GWGCWC 2 cut(s) 171, 285
Alw26I GTCTC 3 cut(s) 112, 141, 424
AlwI GGATC 2 cut(s) 487, 500
Ama87I CYCGRG 2 cut(s) 66, 191
AoxI GGCC 2 cut(s) 38, 182
ApoI RAATTY 2 cut(s) 173, 466
ArsI GACNNNNNNTTYG 2 cut(s) 14, 46
AspLEI GCGC 2 cut(s) 59, 224
AspS9I GGNCC 3 cut(s) 63, 182, 367
AsuC2I CCSGG 4 cut(s) 61, 150, 192, 193
AvaI CYCGRG 2 cut(s) 66, 191
AvaII GGWCC 2 cut(s) 63, 367
BamHI GGATCC 1 cut(s) 492
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 2 cut(s) 171, 285
Bbv12I GWGCWC 2 cut(s) 171, 285
BccI CCATC 1 cut(s) 353
BceAI ACGGC 1 cut(s) 11
BciVI GTATCC 1 cut(s) 219
BcnI CCSGG 4 cut(s) 61, 150, 192, 193
BcoDI GTCTC 3 cut(s) 112, 141, 424
BfmI CTRYAG 1 cut(s) 447
BfoI RGCGCY 1 cut(s) 60
BfuI GTATCC 1 cut(s) 219
BlpI GCTNAGC 1 cut(s) 144
Bme1390I CCNGG 4 cut(s) 61, 150, 192, 193
Bme18I GGWCC 2 cut(s) 63, 367
BmeT110I CYCGRG 2 cut(s) 66, 191
BmgT120I GGNCC 3 cut(s) 63, 182, 367
BmiI GGNNCC 4 cut(s) 58, 64, 65, 494
BmrFI CCNGG 4 cut(s) 61, 150, 192, 193
BmrI ACTGGG 1 cut(s) 493
BmuI ACTGGG 1 cut(s) 493
BplI GAGNNNNNCTC 2 cut(s) 35, 67
BpmI CTGGAG 1 cut(s) 123
Bpu10I CCTNAGC 1 cut(s) 251
Bpu1102I GCTNAGC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 4 cut(s) 61, 150, 192, 193
BsaAI YACGTR 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 191
BsaWI WCCGGW 1 cut(s) 211
Bsc4I CCNNNNNNNGG 4 cut(s) 60, 191, 297, 426
Bse118I RCCGGY 1 cut(s) 116
Bse1I ACTGG 1 cut(s) 499
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 4 cut(s) 60, 191, 297, 426
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 499
BseRI GAGGAG 2 cut(s) 333, 336
Bsh1236I CGCG 1 cut(s) 224
BshFI GGCC 2 cut(s) 40, 184
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 2 cut(s) 171, 285
BsiHKCI CYCGRG 2 cut(s) 66, 191
BsiSI CCGG 7 cut(s) 37, 54, 60, 117, 150, 192, 212
BslFI GGGAC 2 cut(s) 76, 349
BslI CCNNNNNNNGG 4 cut(s) 60, 191, 297, 426
BsmAI GTCTC 3 cut(s) 112, 141, 424
BsmFI GGGAC 2 cut(s) 76, 349
BsmI GAATGC 1 cut(s) 28
BsnI GGCC 2 cut(s) 40, 184
Bso31I GGTCTC 1 cut(s) 112
BsoBI CYCGRG 2 cut(s) 66, 191
Bsp1286I GDGCHC 2 cut(s) 171, 285
Bsp143I GATC 2 cut(s) 276, 492
Bsp1720I GCTNAGC 1 cut(s) 144
BspANI GGCC 2 cut(s) 40, 184
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 1 cut(s) 224
BspLI GGNNCC 4 cut(s) 58, 64, 65, 494
BspPI GGATC 2 cut(s) 487, 500
BspT107I GGYRCC 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 116
BsrI ACTGG 1 cut(s) 499
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 2 cut(s) 276, 492
BssNI GRCGYC 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 314
BstACI GRCGYC 1 cut(s) 57
BstBAI YACGTR 1 cut(s) 294
BstC8I GCNNGC 2 cut(s) 7, 11
BstDEI CTNAG 2 cut(s) 144, 251
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 1 cut(s) 224
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 2 cut(s) 59, 224
BstKTI GATC 2 cut(s) 279, 495
BstMAI GTCTC 3 cut(s) 112, 141, 424
BstMBI GATC 2 cut(s) 276, 492
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstNSI RCATGY 1 cut(s) 13
BstSCI CCNGG 4 cut(s) 59, 148, 190, 191
BstSFI CTRYAG 1 cut(s) 447
BstUI CGCG 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 492
BstYI RGATCY 1 cut(s) 492
BsuI GTATCC 1 cut(s) 219
BsuRI GGCC 2 cut(s) 40, 184
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 506
Cac8I GCNNGC 2 cut(s) 7, 11
CfoI GCGC 2 cut(s) 59, 224
Cfr10I RCCGGY 1 cut(s) 116
Cfr13I GGNCC 3 cut(s) 63, 182, 367
Cfr9I CCCGGG 1 cut(s) 191
CviAII CATG 2 cut(s) 10, 262
DdeI CTNAG 2 cut(s) 144, 251
DinI GGCGCC 1 cut(s) 58
DpnI GATC 2 cut(s) 278, 494
DpnII GATC 2 cut(s) 276, 492
DrdI GACNNNNNNGTC 1 cut(s) 438
DseDI GACNNNNNNGTC 1 cut(s) 438
EaeI YGGCCR 1 cut(s) 38
Ecl136II GAGCTC 2 cut(s) 169, 283
Eco24I GRGCYC 2 cut(s) 171, 285
Eco31I GGTCTC 1 cut(s) 112
Eco47I GGWCC 2 cut(s) 63, 367
Eco53kI GAGCTC 2 cut(s) 169, 283
Eco88I CYCGRG 2 cut(s) 66, 191
EcoICRI GAGCTC 2 cut(s) 169, 283
EcoO109I RGGNCCY 2 cut(s) 63, 367
EcoRI GAATTC 1 cut(s) 173
EcoT38I GRGCYC 2 cut(s) 171, 285
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
FaeI CATG 2 cut(s) 13, 265
FaiI YATR 6 cut(s) 11, 179, 263, 297, 344, 449
FaqI GGGAC 2 cut(s) 76, 349
FatI CATG 2 cut(s) 9, 261
FokI GGATG 1 cut(s) 269
FriOI GRGCYC 2 cut(s) 171, 285
GlaI GCGC 2 cut(s) 58, 223
GsuI CTGGAG 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 2 cut(s) 40, 184
HapII CCGG 7 cut(s) 37, 54, 60, 117, 150, 192, 212
HhaI GCGC 2 cut(s) 59, 224
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 2 cut(s) 13, 265
Hin6I GCGC 2 cut(s) 57, 222
HinP1I GCGC 2 cut(s) 57, 222
HinfI GANTC 1 cut(s) 422
HpaII CCGG 7 cut(s) 37, 54, 60, 117, 150, 192, 212
Hpy188I TCNGA 2 cut(s) 268, 489
Hpy188III TCNNGA 1 cut(s) 19
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 4 cut(s) 84, 220, 358, 469
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 2 cut(s) 9, 13
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 2 cut(s) 144, 251
HpySE526I ACGT 1 cut(s) 293
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 2 cut(s) 13, 265
HspAI GCGC 2 cut(s) 57, 222
KasI GGCGCC 1 cut(s) 56
KflI GGGWCCC 1 cut(s) 63
Kzo9I GATC 2 cut(s) 276, 492
MaeII ACGT 1 cut(s) 293
MalI GATC 2 cut(s) 278, 494
MboI GATC 2 cut(s) 276, 492
MboII GAAGA 2 cut(s) 421, 424
MflI RGATCY 1 cut(s) 492
MhlI GDGCHC 2 cut(s) 171, 285
MluCI AATT 3 cut(s) 14, 173, 466
Mly113I GGCGCC 1 cut(s) 57
MmeI TCCRAC 2 cut(s) 246, 433
MnlI CCTC 4 cut(s) 311, 314, 317, 483
MspI CCGG 7 cut(s) 37, 54, 60, 117, 150, 192, 212
MspR9I CCNGG 4 cut(s) 61, 150, 192, 193
Mva1269I GAATGC 1 cut(s) 28
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 154
NarI GGCGCC 1 cut(s) 57
NciI CCSGG 4 cut(s) 61, 150, 192, 193
NdeII GATC 2 cut(s) 276, 492
NlaIII CATG 2 cut(s) 13, 265
NlaIV GGNNCC 4 cut(s) 58, 64, 65, 494
NspI RCATGY 1 cut(s) 13
PaeI GCATGC 1 cut(s) 13
PctI GAATGC 1 cut(s) 28
PfeI GAWTC 1 cut(s) 422
PluTI GGCGCC 1 cut(s) 60
Ppu21I YACGTR 1 cut(s) 294
PpuMI RGGWCCY 2 cut(s) 63, 367
Psp124BI GAGCTC 2 cut(s) 171, 285
Psp5II RGGWCCY 2 cut(s) 63, 367
PspN4I GGNNCC 4 cut(s) 58, 64, 65, 494
PspPI GGNCC 3 cut(s) 63, 182, 367
PspPPI RGGWCCY 2 cut(s) 63, 367
PsuI RGATCY 1 cut(s) 492
SacI GAGCTC 2 cut(s) 171, 285
Sau3AI GATC 2 cut(s) 276, 492
Sau96I GGNCC 3 cut(s) 63, 182, 367
ScrFI CCNGG 4 cut(s) 61, 150, 192, 193
SduI GDGCHC 2 cut(s) 171, 285
SetI ASST 7 cut(s) 145, 171, 285, 296, 332, 372, 480
SfcI CTRYAG 1 cut(s) 447
SfoI GGCGCC 1 cut(s) 58
SinI GGWCC 2 cut(s) 63, 367
SmaI CCCGGG 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SphI GCATGC 1 cut(s) 13
Sse9I AATT 3 cut(s) 14, 173, 466
SspDI GGCGCC 1 cut(s) 56
SstI GAGCTC 2 cut(s) 171, 285
StyD4I CCNGG 4 cut(s) 59, 148, 190, 191
TaaI ACNGT 1 cut(s) 314
TaiI ACGT 1 cut(s) 296
TaqI TCGA 3 cut(s) 165, 171, 279
TaqII GACCGA 1 cut(s) 94
TasI AATT 3 cut(s) 14, 173, 466
TfiI GAWTC 1 cut(s) 422
TscAI CASTG 1 cut(s) 506
TspDTI ATGAA 3 cut(s) 166, 323, 393
TspGWI ACGGA 1 cut(s) 88
TspMI CCCGGG 1 cut(s) 191
TspRI CASTG 1 cut(s) 506
VpaK11BI GGWCC 2 cut(s) 63, 367
XapI RAATTY 2 cut(s) 173, 466
XceI RCATGY 1 cut(s) 13
XmaI CCCGGG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.