Rmu_co8502815.1_g000001

2Fe-2S iron-sulfur cluster binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8502815.1
OG0011017
Physical Location & Seq
Reverse (-)
994 .. 3034
2041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8502815.1_g000001.1.cds

Sequence Viewer

Length: 456 bp
atgtcgttccggccagtccgattctccggcgccggaaattaccagaagccaaccaattttcttgccagaaggaagtcggtctgctgcgcgggaagttcgccggaaatcgagctcgaattcatagcgccgaagccggcgaacgatgggtcgtatgcggtggagaaggcgacggcgattagtggagagaagctcctgaggagcataatgtcggataacaagatcgagctttacgccacgtatgggaaactgatgaactgtggaggtggaggaagctgtgggacttgcattgtagagattattgatgggaaggatcttttgaatgaaagaacgaatactgaactcaaatatttgaaaaagaaacctgaatcttggagactagcttgccaaactatagtgggaaataaagaaaattctgggaaggttcttgttcagaggattccccagtggaaaaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fer2

Protein Analysis

151

Amino Acids

16.65

Weight (kDa)

9.35

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011017)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32590 AT4G32590 AT4G32590 AT4G32590 AT4G32590
fragaria_vesca FvH4_2g30090 FvH4_2g30090
malus_domestica MD15G1116000.v1.1
prunus_persica Prupe.1G467300_v2.0.a1
pyrus_communis pycom15g10460
rosa_chinensis RchiOBHm_Chr6g0312831
rosa_laevigata RLG00000010294
rosa_multiflora Rmu_co8502815.1_g000001
rosa_roxburghii Rroxscaffold_7G00156450
rosa_rugosa Rorug06G0399900
rosa_samantha Rh6AG517100 Rh6BG528500 Rh6CG533200 Rh6DG519700
rosa_wichuraiana Rw6G044920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 29
AccII CGCG 1 cut(s) 89
AciI CCGC 2 cut(s) 89, 155
AclWI GGATC 1 cut(s) 318
AcoI YGGCCR 1 cut(s) 11
AcsI RAATTY 2 cut(s) 116, 409
AcyI GRCGYC 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 240
AgsI TTSAA 2 cut(s) 319, 352
AluBI AGCT 5 cut(s) 112, 190, 226, 273, 380
AluI AGCT 5 cut(s) 112, 190, 226, 273, 380
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 367
AlwI GGATC 1 cut(s) 318
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 84
ApoI RAATTY 2 cut(s) 116, 409
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AspLEI GCGC 3 cut(s) 32, 89, 127
AxyI CCTNAGG 1 cut(s) 194
BanI GGYRCC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 71
BccI CCATC 2 cut(s) 137, 296
BceAI ACGGC 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 367
BfaI CTAG 1 cut(s) 377
BfmI CTRYAG 1 cut(s) 390
BfoI RGCGCY 2 cut(s) 33, 128
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 31
BmrI ACTGGG 1 cut(s) 436
BmuI ACTGGG 1 cut(s) 436
BplI GAGNNNNNCTC 2 cut(s) 174, 206
BsaAI YACGTR 1 cut(s) 237
BsaHI GRCGYC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 2 cut(s) 14, 442
Bse21I CCTNAGG 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 2 cut(s) 14, 442
BseRI GAGGAG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 1 cut(s) 13
BshNI GGYRCC 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 5 cut(s) 10, 27, 33, 101, 134
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 240
BsmAI GTCTC 1 cut(s) 367
BsmFI GGGAC 1 cut(s) 292
BsnI GGCC 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 2 cut(s) 219, 310
BspACI CCGC 2 cut(s) 89, 155
BspANI GGCC 1 cut(s) 13
BspCNI CTCAG 1 cut(s) 186
BspFNI CGCG 1 cut(s) 89
BspLI GGNNCC 1 cut(s) 31
BspPI GGATC 1 cut(s) 318
BspT107I GGYRCC 1 cut(s) 29
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 2 cut(s) 14, 442
BssAI RCCGGY 1 cut(s) 133
BssMI GATC 2 cut(s) 219, 310
BssNI GRCGYC 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 237
BstC8I GCNNGC 2 cut(s) 135, 382
BstDEI CTNAG 1 cut(s) 194
BstFNI CGCG 1 cut(s) 89
BstH2I RGCGCY 2 cut(s) 33, 128
BstHHI GCGC 3 cut(s) 32, 89, 127
BstKTI GATC 2 cut(s) 222, 313
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 2 cut(s) 219, 310
BstSFI CTRYAG 1 cut(s) 390
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
Bsu36I CCTNAGG 1 cut(s) 194
BsuRI GGCC 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 449
Cac8I GCNNGC 2 cut(s) 135, 382
CfoI GCGC 3 cut(s) 32, 89, 127
Cfr10I RCCGGY 1 cut(s) 133
CviJI RGCY 8 cut(s) 13, 49, 112, 133, 190, 226, 273, 380
CviKI_1 RGCY 8 cut(s) 13, 49, 112, 133, 190, 226, 273, 380
DdeI CTNAG 1 cut(s) 194
DinI GGCGCC 1 cut(s) 31
DpnI GATC 2 cut(s) 221, 312
DpnII GATC 2 cut(s) 219, 310
EaeI YGGCCR 1 cut(s) 11
Ecl136II GAGCTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 112
Eco81I CCTNAGG 1 cut(s) 194
EcoICRI GAGCTC 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 114
EgeI GGCGCC 1 cut(s) 31
EheI GGCGCC 1 cut(s) 31
FaiI YATR 5 cut(s) 122, 153, 203, 240, 392
FaqI GGGAC 1 cut(s) 292
FauI CCCGC 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 85
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 1 cut(s) 377
GlaI GCGC 3 cut(s) 31, 88, 126
GluI GCNGC 1 cut(s) 85
HaeII RGCGCY 2 cut(s) 33, 128
HaeIII GGCC 1 cut(s) 13
HapII CCGG 5 cut(s) 10, 27, 33, 101, 134
HhaI GCGC 3 cut(s) 32, 89, 127
Hin1I GRCGYC 1 cut(s) 30
Hin6I GCGC 3 cut(s) 30, 87, 125
HinP1I GCGC 3 cut(s) 30, 87, 125
HinfI GANTC 3 cut(s) 21, 365, 436
HpaII CCGG 5 cut(s) 10, 27, 33, 101, 134
Hpy188I TCNGA 3 cut(s) 20, 211, 432
Hpy188III TCNNGA 1 cut(s) 193
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 4 cut(s) 63, 157, 301, 412
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 1 cut(s) 285
HpyF3I CTNAG 1 cut(s) 194
HpySE526I ACGT 1 cut(s) 236
Hsp92I GRCGYC 1 cut(s) 30
HspAI GCGC 3 cut(s) 30, 87, 125
KasI GGCGCC 1 cut(s) 29
KroI GCCGGC 1 cut(s) 133
KroNI GCCGGC 1 cut(s) 135
Kzo9I GATC 2 cut(s) 219, 310
LmnI GCTCC 2 cut(s) 195, 198
Lsp1109I GCAGC 1 cut(s) 71
MaeI CTAG 1 cut(s) 377
MaeII ACGT 1 cut(s) 236
MalI GATC 2 cut(s) 221, 312
MboI GATC 2 cut(s) 219, 310
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 4 cut(s) 37, 55, 116, 409
Mly113I GGCGCC 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 4 cut(s) 189, 254, 260, 426
MroNI GCCGGC 1 cut(s) 133
MspI CCGG 5 cut(s) 10, 27, 33, 101, 134
MvnI CGCG 1 cut(s) 89
NaeI GCCGGC 1 cut(s) 135
NarI GGCGCC 1 cut(s) 30
NdeII GATC 2 cut(s) 219, 310
NgoMIV GCCGGC 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 31
PdiI GCCGGC 1 cut(s) 135
PfeI GAWTC 3 cut(s) 21, 365, 436
PkrI GCNGC 1 cut(s) 86
PluTI GGCGCC 1 cut(s) 33
Ppu21I YACGTR 1 cut(s) 237
Psp124BI GAGCTC 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 31
PsuI RGATCY 1 cut(s) 310
SacI GAGCTC 1 cut(s) 114
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 2 cut(s) 219, 310
SduI GDGCHC 1 cut(s) 114
SetI ASST 9 cut(s) 114, 192, 228, 239, 265, 275, 364, 382, 423
SfcI CTRYAG 1 cut(s) 390
SfoI GGCGCC 1 cut(s) 31
Sse9I AATT 4 cut(s) 37, 55, 116, 409
SsiI CCGC 2 cut(s) 89, 155
SspDI GGCGCC 1 cut(s) 29
SspI AATATT 1 cut(s) 347
SspMI CTAG 1 cut(s) 377
SstI GAGCTC 1 cut(s) 114
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 1 cut(s) 239
TaqI TCGA 3 cut(s) 108, 114, 222
TaqII GACCGA 1 cut(s) 67
TasI AATT 4 cut(s) 37, 55, 116, 409
TfiI GAWTC 3 cut(s) 21, 365, 436
TscAI CASTG 1 cut(s) 449
TseI GCWGC 1 cut(s) 84
TspDTI ATGAA 3 cut(s) 109, 266, 336
TspRI CASTG 1 cut(s) 449
XapI RAATTY 2 cut(s) 116, 409
XspI CTAG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.