FvH4_2g30670

RNA methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015123
Physical Location & Seq
Reverse (-)
23715710 .. 23718403
2694 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30670.t1

Sequence Viewer

Length: 558 bp
ATGGTTGTGGTGTGTAGTGCCTCTGCTACCAATTTCTCTGCACTTCCTTCAGGTAAAGGTTGCAAGTACACAGGTCAAGCAGTGAGAGCACTTCCTATACGGATAATATCGGTAGGGAAAAAGAGGTCGCAAGGTGTGCAACTCGTTGTGGATGACTATATTCAGAGGCTTAAGTTGTACTGTAGTGTTGAGGATGTTCATATAAAGAACAATCCTAAGAATGCAAGTGATTGGAGGGCTCAGGTTGATCATGAAGACAGTGTTGTCATGGATCTTATCAGGTCCGATGATTGGGTGGTGCTGTTGGATGAGCGTGGGAAAGACATAGGTTCCATGCAGATGGCTGAGTTGATTGGGGATGCAGGGAATACGGGAGCTTCAAGACTATTGTTCTGTGTTGGTGGACCTTATGGACATGGAAAACAATTGAGAGAACGAGCTAACATATCTATCAAGTTGTCTTCTATGGTGTTAAATCATCAGATTGCTATACTTGTGCTTGTAGAACAACTCTATAGGTCATGGACCATTCTAAAAGGACAGAACTATCATCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPOUT_MTase

Protein Analysis

186

Amino Acids

20.52

Weight (kDa)

9.08

Isoelectric Point (pI)

22.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOUT_MTase PF02590 32 - 184 7.3e-45 Predicted SPOUT methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10620 AT5G10620
fragaria_vesca FvH4_2g30670
malus_domestica MD15G1110100.v1.1
prunus_persica Prupe.1G462300_v2.0.a1
pyrus_communis pycom15g10030
rosa_chinensis RchiOBHm_Chr6g0312221
rosa_laevigata RLG00000010341
rosa_multiflora Rmu_sc0010924.1_g000004
rosa_roxburghii Rroxscaffold_7G00156940
rosa_rugosa Rorug06G0394200
rosa_samantha Rh6AG511100 Rh6BG522100 Rh6CG527900 Rh6DG513300
rosa_wichuraiana Rw6G044450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
AclWI GGATC 1 cut(s) 279
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 2 cut(s) 68, 179
AfiI CCNNNNNNNGG 1 cut(s) 291
AflII CTTAAG 1 cut(s) 170
AgsI TTSAA 1 cut(s) 381
AluBI AGCT 2 cut(s) 377, 440
AluI AGCT 2 cut(s) 377, 440
Alw21I GWGCWC 1 cut(s) 91
AlwI GGATC 1 cut(s) 279
AspS9I GGNCC 3 cut(s) 282, 404, 525
AvaII GGWCC 3 cut(s) 282, 404, 525
BanII GRGCYC 1 cut(s) 241
BbsI GAAGAC 2 cut(s) 261, 453
Bbv12I GWGCWC 1 cut(s) 91
BccI CCATC 1 cut(s) 334
BclI TGATCA 1 cut(s) 247
BfaI CTAG 1 cut(s) 556
BfmI CTRYAG 2 cut(s) 181, 514
BfrI CTTAAG 1 cut(s) 170
Bme18I GGWCC 3 cut(s) 282, 404, 525
BmgT120I GGNCC 3 cut(s) 282, 404, 525
BmiI GGNNCC 1 cut(s) 331
BmsI GCATC 1 cut(s) 349
BpiI GAAGAC 2 cut(s) 261, 453
Bpu10I CCTNAGC 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 291
BseGI GGATG 4 cut(s) 157, 199, 313, 364
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMII CTCAG 2 cut(s) 254, 336
BsgI GTGCAG 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 291
BsmI GAATGC 1 cut(s) 226
Bsp1286I GDGCHC 2 cut(s) 91, 241
Bsp143I GATC 2 cut(s) 247, 271
BspCNI CTCAG 2 cut(s) 253, 337
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 331
BspPI GGATC 1 cut(s) 279
BspTI CTTAAG 1 cut(s) 170
BssMI GATC 2 cut(s) 247, 271
Bst4CI ACNGT 2 cut(s) 182, 260
BstAFI CTTAAG 1 cut(s) 170
BstAPI GCANNNNNTGC 1 cut(s) 136
BstDEI CTNAG 3 cut(s) 216, 240, 345
BstF5I GGATG 4 cut(s) 157, 199, 313, 364
BstKTI GATC 2 cut(s) 250, 274
BstMBI GATC 2 cut(s) 247, 271
BstMWI GCNNNNNNNGC 2 cut(s) 86, 136
BstSFI CTRYAG 2 cut(s) 181, 514
BstV2I GAAGAC 2 cut(s) 261, 453
BstX2I RGATCY 1 cut(s) 271
BstXI CCANNNNNNTGG 1 cut(s) 340
BstYI RGATCY 1 cut(s) 271
BtgZI GCGATG 1 cut(s) 536
BtsCI GGATG 4 cut(s) 157, 199, 313, 364
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 2 cut(s) 87, 265
CciI TCATGA 1 cut(s) 250
Cfr13I GGNCC 3 cut(s) 282, 404, 525
Csp6I GTAC 2 cut(s) 67, 178
CviAII CATG 5 cut(s) 251, 268, 334, 416, 522
CviJI RGCY 5 cut(s) 169, 239, 344, 377, 440
CviKI_1 RGCY 5 cut(s) 169, 239, 344, 377, 440
CviQI GTAC 2 cut(s) 67, 178
DdeI CTNAG 3 cut(s) 216, 240, 345
DpnI GATC 2 cut(s) 249, 273
DpnII GATC 2 cut(s) 247, 271
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 241
Eco47I GGWCC 3 cut(s) 282, 404, 525
Eco57I CTGAAG 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 241
FaeI CATG 5 cut(s) 254, 271, 337, 419, 525
FatI CATG 5 cut(s) 250, 267, 333, 415, 521
FbaI TGATCA 1 cut(s) 247
FokI GGATG 4 cut(s) 164, 206, 320, 371
FriOI GRGCYC 1 cut(s) 241
FspBI CTAG 1 cut(s) 556
Hin1II CATG 5 cut(s) 254, 271, 337, 419, 525
Hpy166II GTNNAC 2 cut(s) 69, 404
Hpy188I TCNGA 3 cut(s) 165, 286, 483
Hpy188III TCNNGA 2 cut(s) 251, 381
Hpy8I GTNNAC 2 cut(s) 69, 404
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 2 cut(s) 182, 260
HpyCH4V TGCA 6 cut(s) 41, 63, 139, 224, 337, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 136
HpyF3I CTNAG 3 cut(s) 216, 240, 345
Hsp92II CATG 5 cut(s) 254, 271, 337, 419, 525
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 247, 271
LmnI GCTCC 1 cut(s) 374
LpnPI CCDG 5 cut(s) 36, 57, 227, 265, 348
LweI GCATC 1 cut(s) 349
MaeI CTAG 1 cut(s) 556
MalI GATC 2 cut(s) 249, 273
MboI GATC 2 cut(s) 247, 271
MboII GAAGA 2 cut(s) 266, 453
MfeI CAATTG 1 cut(s) 425
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 2 cut(s) 91, 241
MluCI AATT 2 cut(s) 31, 425
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 5 cut(s) 31, 117, 159, 184, 228
MseI TTAA 2 cut(s) 171, 473
MslI CAYNNNNRTG 1 cut(s) 338
MspCI CTTAAG 1 cut(s) 170
MunI CAATTG 1 cut(s) 425
Mva1269I GAATGC 1 cut(s) 226
MwoI GCNNNNNNNGC 2 cut(s) 86, 136
NdeII GATC 2 cut(s) 247, 271
NlaIII CATG 5 cut(s) 254, 271, 337, 419, 525
NlaIV GGNNCC 1 cut(s) 331
PagI TCATGA 1 cut(s) 250
PctI GAATGC 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 331
PspPI GGNCC 3 cut(s) 282, 404, 525
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 2 cut(s) 68, 179
RsaNI GTAC 2 cut(s) 67, 178
RseI CAYNNNNRTG 1 cut(s) 338
SaqAI TTAA 2 cut(s) 171, 473
Sau3AI GATC 2 cut(s) 247, 271
Sau96I GGNCC 3 cut(s) 282, 404, 525
SduI GDGCHC 2 cut(s) 91, 241
SfaNI GCATC 1 cut(s) 349
SfcI CTRYAG 2 cut(s) 181, 514
SinI GGWCC 3 cut(s) 282, 404, 525
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 2 cut(s) 31, 425
SspMI CTAG 1 cut(s) 556
TaaI ACNGT 2 cut(s) 182, 260
TasI AATT 2 cut(s) 31, 425
TatI WGTACW 2 cut(s) 66, 177
Tru1I TTAA 2 cut(s) 171, 473
Tru9I TTAA 2 cut(s) 171, 473
TscAI CASTG 2 cut(s) 87, 265
TspDTI ATGAA 2 cut(s) 188, 267
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 2 cut(s) 87, 265
Vha464I CTTAAG 1 cut(s) 170
VpaK11BI GGWCC 3 cut(s) 282, 404, 525
XspI CTAG 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.