Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0015123

Physical Location & Seq

Genomic Coordinates Reverse (-)

53980653 .. 53981863

Gene Structure 1211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0394200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCTTGATTTTGCGCATTGCCGGAACCAGATTGAACCAGATGGACTTGTCCAGCGCCGAGAGGATTTCGTTTCCGACGAGGAGGTACCGGATCAGAGTATGTGGGTAGAAGGGGACTACATTGGCGTGGACCCATTGGTCCGCGAGGGTTTGATTGGAGGAATTGTTGTTGATGAGCTCATTGGGTACCATAATCGAGACTTGGAGGTCTGTGTTTTGGAGAGCCTTGAGGATTTTGGGGTTGGCATCGTAGATTTTGACTCGCTTAGCTTTGAGGGTTTGGATGAGCTTTACAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPOUT_MTase

Protein Analysis

100

Amino Acids

11.4

Weight (kDa)

4.05

Isoelectric Point (pI)

27.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10620 AT5G10620
fragaria_vesca	FvH4_2g30670
malus_domestica	MD15G1110100.v1.1
prunus_persica	Prupe.1G462300_v2.0.a1
pyrus_communis	pycom15g10030
rosa_chinensis	RchiOBHm_Chr6g0312221
rosa_laevigata	RLG00000010341
rosa_multiflora	Rmu_sc0010924.1_g000004
rosa_roxburghii	Rroxscaffold_7G00156940
rosa_rugosa	Rorug06G0394200
rosa_samantha	Rh6AG511100 Rh6BG522100 Rh6CG527900 Rh6DG513300
rosa_wichuraiana	Rw6G044450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	137, 206
Acc16I	TGCGCA	1 cut(s)	15
Acc65I	GGTACC	2 cut(s)	85, 186
AccB1I	GGYRCC	2 cut(s)	85, 186
AccII	CGCG	1 cut(s)	144
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	1 cut(s)	99
AfaI	GTAC	2 cut(s)	87, 188
AgsI	TTSAA	1 cut(s)	35
AluBI	AGCT	3 cut(s)	178, 270, 289
AluI	AGCT	3 cut(s)	178, 270, 289
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	99
AlwNI	CAGNNNCTG	1 cut(s)	300
Asp718I	GGTACC	2 cut(s)	85, 186
AspLEI	GCGC	2 cut(s)	16, 57
AspS9I	GGNCC	2 cut(s)	130, 139
AvaII	GGWCC	2 cut(s)	130, 139
BanI	GGYRCC	2 cut(s)	85, 186
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	180
BccI	CCATC	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	192
BfoI	RGCGCY	1 cut(s)	58
BlpI	GCTNAGC	1 cut(s)	266
Bme18I	GGWCC	2 cut(s)	130, 139
BmgT120I	GGNCC	2 cut(s)	130, 139
BmiI	GGNNCC	4 cut(s)	26, 87, 132, 188
BmsI	GCATC	1 cut(s)	255
Bpu1102I	GCTNAGC	1 cut(s)	266
BpuEI	CTTGAG	1 cut(s)	248
BsaWI	WCCGGW	1 cut(s)	88
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bse3DI	GCAATG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	289
BseMI	GCAATG	1 cut(s)	16
BseRI	GAGGAG	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	144
BshNI	GGYRCC	2 cut(s)	85, 186
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	22, 89
BslFI	GGGAC	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	91
Bsp1720I	GCTNAGC	1 cut(s)	266
BspACI	CCGC	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	4 cut(s)	26, 87, 132, 188
BspPI	GGATC	1 cut(s)	99
BspT107I	GGYRCC	2 cut(s)	85, 186
BsrDI	GCAATG	1 cut(s)	16
BssMI	GATC	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	144
BstH2I	RGCGCY	1 cut(s)	58
BstHHI	GCGC	2 cut(s)	16, 57
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	91
BstUI	CGCG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	289
CaiI	CAGNNNCTG	1 cut(s)	300
CfoI	GCGC	2 cut(s)	16, 57
Cfr13I	GGNCC	2 cut(s)	130, 139
Csp6I	GTAC	2 cut(s)	86, 187
CviJI	RGCY	4 cut(s)	178, 225, 270, 289
CviKI_1	RGCY	4 cut(s)	178, 225, 270, 289
CviQI	GTAC	2 cut(s)	86, 187
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
DrdI	GACNNNNNNGTC	2 cut(s)	137, 206
DseDI	GACNNNNNNGTC	2 cut(s)	137, 206
Ecl136II	GAGCTC	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	130, 139
Eco53kI	GAGCTC	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	180
FaiI	YATR	2 cut(s)	101, 192
FaqI	GGGAC	1 cut(s)	128
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	1 cut(s)	180
FspI	TGCGCA	1 cut(s)	15
GlaI	GCGC	2 cut(s)	15, 56
HaeII	RGCGCY	1 cut(s)	58
HapII	CCGG	2 cut(s)	22, 89
HhaI	GCGC	2 cut(s)	16, 57
Hin6I	GCGC	2 cut(s)	14, 55
HinP1I	GCGC	2 cut(s)	14, 55
HinfI	GANTC	2 cut(s)	260, 297
HpaII	CCGG	2 cut(s)	22, 89
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	76, 96, 302
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	266
HspAI	GCGC	2 cut(s)	14, 55
KpnI	GGTACC	2 cut(s)	89, 190
Kzo9I	GATC	1 cut(s)	91
LpnPI	CCDG	5 cut(s)	35, 41, 51, 65, 102
LweI	GCATC	1 cut(s)	255
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	8 cut(s)	55, 73, 76, 139, 152, 199, 223, 268
MslI	CAYNNNNRTG	1 cut(s)	125
MspI	CCGG	2 cut(s)	22, 89
MvnI	CGCG	1 cut(s)	144
NdeII	GATC	1 cut(s)	91
NlaIV	GGNNCC	4 cut(s)	26, 87, 132, 188
NmeAIII	GCCGAG	1 cut(s)	83
NsbI	TGCGCA	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	297
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
Psp124BI	GAGCTC	1 cut(s)	180
PspN4I	GGNNCC	4 cut(s)	26, 87, 132, 188
PspPI	GGNCC	2 cut(s)	130, 139
PstNI	CAGNNNCTG	1 cut(s)	300
RsaI	GTAC	2 cut(s)	87, 188
RsaNI	GTAC	2 cut(s)	86, 187
RseI	CAYNNNNRTG	1 cut(s)	125
SacI	GAGCTC	1 cut(s)	180
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	2 cut(s)	130, 139
SchI	GAGTC	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	5 cut(s)	87, 180, 210, 272, 291
SfaNI	GCATC	1 cut(s)	255
SinI	GGWCC	2 cut(s)	130, 139
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	1 cut(s)	142
SstI	GAGCTC	1 cut(s)	180
TaqI	TCGA	1 cut(s)	196
TasI	AATT	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	297
VpaK11BI	GGWCC	2 cut(s)	130, 139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.