Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015123

Physical Location & Seq

Genomic Coordinates Forward (+)

38627852 .. 38631654

Gene Structure 3803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G462300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGTTGTCATGCTTAGTGCCCGTCTTCCCACCATTAATTATGCTCTTCCTTCAGGTAGAGATTGTAAGTACACAGGTCAAGCAGTGAGAGCATTCCCTATACGAATAATATCAGTAGGGAAAAAGAGATCACAAGGTGTACAACTCGTAGTGGATGAGTACATTGAAAAGCTTAAGCTCTACTGTAGTGTTGAAGATGCTCACATACGGAACAATCCTAAAAATGCACGTGATTGGAGAGCTCAGGTTGATCATGAAGACAGTGCTGTTATGGATCTTATCACGTCTGACGATTGGGTTGTGCTGTTGGATGAGCGTGGGAAAGACATAGGGTCCGAGCAGATGGCTGAGTTGGTGGGGGATGCTGGAAATACAGGAGCTTCAAGACTATCATTCTGCATTGGTGGACCGTATGGTCATGGAAAACGATTGCGAGAGCGTGCTGATGTTTCTGTCAAGCTGTCTTCTATGGTATTAAACCATCAAATTGCAATAGTTGTGCTCGTAGAACAACTCTATAGGTCGTGGACTATTCTGAAAGGACAGAACTATCATCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPOUT_MTase

Protein Analysis

187

Amino Acids

20.87

Weight (kDa)

8.76

Isoelectric Point (pI)

27.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10620 AT5G10620
fragaria_vesca	FvH4_2g30670
malus_domestica	MD15G1110100.v1.1
prunus_persica	Prupe.1G462300_v2.0.a1
pyrus_communis	pycom15g10030
rosa_chinensis	RchiOBHm_Chr6g0312221
rosa_laevigata	RLG00000010341
rosa_multiflora	Rmu_sc0010924.1_g000004
rosa_roxburghii	Rroxscaffold_7G00156940
rosa_rugosa	Rorug06G0394200
rosa_samantha	Rh6AG511100 Rh6BG522100 Rh6CG527900 Rh6DG513300
rosa_wichuraiana	Rw6G044450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	414
AclWI	GGATC	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	36
AcvI	CACGTG	1 cut(s)	230
AdeI	CACNNNGTG	1 cut(s)	137
AfaI	GTAC	3 cut(s)	71, 141, 161
AflII	CTTAAG	1 cut(s)	173
AgsI	TTSAA	3 cut(s)	167, 194, 384
AhdI	GACNNNNNGTC	1 cut(s)	331
AjiI	CACGTC	1 cut(s)	285
AluBI	AGCT	5 cut(s)	172, 178, 242, 380, 460
AluI	AGCT	5 cut(s)	172, 178, 242, 380, 460
Alw21I	GWGCWC	2 cut(s)	244, 504
AlwI	GGATC	1 cut(s)	282
AseI	ATTAAT	1 cut(s)	36
AspS9I	GGNCC	2 cut(s)	333, 407
AvaII	GGWCC	2 cut(s)	333, 407
BaeGI	GKGCMC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	244
BbrPI	CACGTG	1 cut(s)	230
BbsI	GAAGAC	3 cut(s)	17, 264, 456
Bbv12I	GWGCWC	2 cut(s)	244, 504
BccI	CCATC	2 cut(s)	337, 489
BclI	TGATCA	1 cut(s)	250
BfmI	CTRYAG	2 cut(s)	184, 517
BfrI	CTTAAG	1 cut(s)	173
Bme18I	GGWCC	2 cut(s)	333, 407
BmeRI	GACNNNNNGTC	1 cut(s)	331
BmgBI	CACGTC	1 cut(s)	285
BmgT120I	GGNCC	2 cut(s)	333, 407
BmiI	GGNNCC	1 cut(s)	334
BmsI	GCATC	2 cut(s)	187, 352
BpiI	GAAGAC	3 cut(s)	17, 264, 456
Bpu10I	CCTNAGC	1 cut(s)	243
BsaAI	YACGTR	1 cut(s)	230
BseGI	GGATG	3 cut(s)	160, 316, 367
BseMII	CTCAG	2 cut(s)	257, 339
BseSI	GKGCMC	1 cut(s)	22
BsiHKAI	GWGCWC	2 cut(s)	244, 504
BsmI	GAATGC	1 cut(s)	92
Bsp1286I	GDGCHC	3 cut(s)	22, 244, 504
Bsp1407I	TGTACA	1 cut(s)	139
Bsp143I	GATC	3 cut(s)	128, 250, 274
BspCNI	CTCAG	2 cut(s)	256, 340
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	334
BspPI	GGATC	1 cut(s)	282
BspQI	GCTCTTC	1 cut(s)	51
BspTI	CTTAAG	1 cut(s)	173
BsrGI	TGTACA	1 cut(s)	139
BssMI	GATC	3 cut(s)	128, 250, 274
Bst4CI	ACNGT	3 cut(s)	185, 263, 411
Bst6I	CTCTTC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	173
BstAUI	TGTACA	1 cut(s)	139
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	3 cut(s)	14, 243, 348
BstF5I	GGATG	3 cut(s)	160, 316, 367
BstKTI	GATC	3 cut(s)	131, 253, 277
BstMBI	GATC	3 cut(s)	128, 250, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstSFI	CTRYAG	2 cut(s)	184, 517
BstSLI	GKGCMC	1 cut(s)	22
BstV2I	GAAGAC	3 cut(s)	17, 264, 456
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BtrI	CACGTC	1 cut(s)	285
BtsCI	GGATG	3 cut(s)	160, 316, 367
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	2 cut(s)	90, 268
Cac8I	GCNNGC	1 cut(s)	441
CciI	TCATGA	1 cut(s)	253
Cfr13I	GGNCC	2 cut(s)	333, 407
Csp6I	GTAC	3 cut(s)	70, 140, 160
CviAII	CATG	3 cut(s)	10, 254, 419
CviJI	RGCY	6 cut(s)	172, 178, 242, 347, 380, 460
CviKI_1	RGCY	6 cut(s)	172, 178, 242, 347, 380, 460
CviQI	GTAC	3 cut(s)	70, 140, 160
DdeI	CTNAG	3 cut(s)	14, 243, 348
DpnI	GATC	3 cut(s)	130, 252, 276
DpnII	GATC	3 cut(s)	128, 250, 274
DraIII	CACNNNGTG	1 cut(s)	137
DrdI	GACNNNNNNGTC	1 cut(s)	414
DriI	GACNNNNNGTC	1 cut(s)	331
DseDI	GACNNNNNNGTC	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	51
Eam1105I	GACNNNNNGTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	244
Eco47I	GGWCC	2 cut(s)	333, 407
Eco53kI	GAGCTC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	36
Eco72I	CACGTG	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	244
FaeI	CATG	3 cut(s)	13, 257, 422
FatI	CATG	3 cut(s)	9, 253, 418
FbaI	TGATCA	1 cut(s)	250
FokI	GGATG	3 cut(s)	167, 323, 374
FriOI	GRGCYC	1 cut(s)	244
Hin1II	CATG	3 cut(s)	13, 257, 422
HindIII	AAGCTT	1 cut(s)	170
Hpy166II	GTNNAC	4 cut(s)	72, 140, 407, 528
Hpy188I	TCNGA	3 cut(s)	289, 337, 537
Hpy188III	TCNNGA	2 cut(s)	254, 384
Hpy8I	GTNNAC	4 cut(s)	72, 140, 407, 528
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	3 cut(s)	185, 263, 411
HpyCH4IV	ACGT	2 cut(s)	229, 284
HpyCH4V	TGCA	3 cut(s)	227, 399, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	3 cut(s)	14, 243, 348
HpySE526I	ACGT	2 cut(s)	229, 284
Hsp92II	CATG	3 cut(s)	13, 257, 422
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	128, 250, 274
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	377
LpnPI	CCDG	5 cut(s)	39, 60, 230, 351, 360
LweI	GCATC	2 cut(s)	187, 352
MaeII	ACGT	2 cut(s)	229, 284
MalI	GATC	3 cut(s)	130, 252, 276
MboI	GATC	3 cut(s)	128, 250, 274
MboII	GAAGA	5 cut(s)	17, 38, 206, 269, 456
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	3 cut(s)	22, 244, 504
MluCI	AATT	2 cut(s)	37, 486
MmeI	TCCRAC	1 cut(s)	288
MseI	TTAA	3 cut(s)	36, 174, 476
MspCI	CTTAAG	1 cut(s)	173
Mva1269I	GAATGC	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeII	GATC	3 cut(s)	128, 250, 274
NlaIII	CATG	3 cut(s)	13, 257, 422
NlaIV	GGNNCC	1 cut(s)	334
PagI	TCATGA	1 cut(s)	253
PciSI	GCTCTTC	1 cut(s)	51
PctI	GAATGC	1 cut(s)	92
PmaCI	CACGTG	1 cut(s)	230
PmlI	CACGTG	1 cut(s)	230
Ppu21I	YACGTR	1 cut(s)	230
PshBI	ATTAAT	1 cut(s)	36
Psp124BI	GAGCTC	1 cut(s)	244
PspCI	CACGTG	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	2 cut(s)	333, 407
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	3 cut(s)	71, 141, 161
RsaNI	GTAC	3 cut(s)	70, 140, 160
SacI	GAGCTC	1 cut(s)	244
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	3 cut(s)	36, 174, 476
Sau3AI	GATC	3 cut(s)	128, 250, 274
Sau96I	GGNCC	2 cut(s)	333, 407
SduI	GDGCHC	3 cut(s)	22, 244, 504
SfaNI	GCATC	2 cut(s)	187, 352
SfcI	CTRYAG	2 cut(s)	184, 517
SinI	GGWCC	2 cut(s)	333, 407
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	37, 486
SstI	GAGCTC	1 cut(s)	244
TaaI	ACNGT	3 cut(s)	185, 263, 411
TaiI	ACGT	2 cut(s)	232, 287
TasI	AATT	2 cut(s)	37, 486
TatI	WGTACW	3 cut(s)	69, 139, 159
Tru1I	TTAA	3 cut(s)	36, 174, 476
Tru9I	TTAA	3 cut(s)	36, 174, 476
TscAI	CASTG	2 cut(s)	90, 268
TspDTI	ATGAA	1 cut(s)	270
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	2 cut(s)	90, 268
Vha464I	CTTAAG	1 cut(s)	173
VpaK11BI	GGWCC	2 cut(s)	333, 407
VspI	ATTAAT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.