Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012387

Physical Location & Seq

Genomic Coordinates Forward (+)

24915328 .. 24916835

Gene Structure 1508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g33130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGCTCAAATCTCTGATGAGCTCGCCGGAGATGGACGCCGGAATATGGTCCAACTTACCGGAGGAGGTTCTGGAGCGTATTCTCTCTATGCTGCCTCTCAAAACGTTTATGGTGCTGAGATCAACTTGCAAGCATTTCAAGTCTCTGTTATTCTCACCCCCTTTCATTTCCAAGCACTCTTCCTCCTCCTCCAGTTCCTCACCCTTCTCTTCTTTCCTCATGCTTTCTCACCCCCAGTGCTACCCCCACTTCCCTCTCTACGACTCGCCGCTCGGCGCGTGGCGCAGGTTCGCTCTTTCACTCTCGGAATTGCTACCCTGCGCTGCAGGACCAGTCTCTCTGCTCTCCATCTCCAATGGCCTGCTCTGTTTCTCTCTGCCGAGCTCATCTTCCTTTGTTGTGTGTAACTTCATGACCAAGTCATCCAGAGTGATCAAATTCCCTACCAACCCTTTTGGTTTTGAGCTCCTTACTTTGGTTTCCACTCCAGTTGGGTACAATATTTTCATGCTCTCTTCTGGTTCTTCCACCAAGACTAGAACCTTTGTGTATGATTCGAAAATCCAATCATGGCAAAACTTCAGCGCACTGGATACAATTCTCAGTGACAATCATCATCAACAAGGTGTTCATTTCAAAGGGTCTCTCTACTTTTCGACCCCGGAGCCATTCTCAGTTGTCAAGTTTGATTTGGAGAGTGGTAAGTGGGGGAGAGACAATATTGAACTACCTGGAGAGCTTGTTTTTGTTCGATTAGTGAGTGATGAAGGAAAAGGGAAGATGTATTTGATTGGTGGGATTGGTAGGAATGGGATTTCGAGAAGCATGAAAATCTGGGAATTGTGTGAAGGCCAGAATTGGGTGGAGATTGAGAGGGTGCCTGAAATGATGTGTAGAAAGATAATGTCAGTTTGTTACCATCATTACGAGCATCTCTATTGCTTCTGGCATCAGGGTTTAATCTGTGTTTGCTGCTATGCATGGCCTGAGATTCTGTATTACAAGGTTTCCAGGAGGACTTGGCATTGGCTCCCAAAGAGCCCGTCAGTGCCGGAAAGATGGGCTTGTGGCTTCAGGTGGTTTTCTTTTGTGCCGGAGTTGTATGCTTCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

372

Amino Acids

42.35

Weight (kDa)

8.62

Isoelectric Point (pI)

62.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	16 - 56	1.1e-09	F-box domain
F-box-like	PF12937	16 - 53	3.1e-07	F-box-like
FBA_1	PF07734	118 - 233	2.5e-07	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43190
fragaria_vesca	FvH4_2g33130
malus_domestica	MD08G1084200.v1.1 MD15G1070300.v1.1
prunus_persica	Prupe.1G423100_v2.0.a1
pyrus_communis	pycom08g06980
rosa_chinensis	RchiOBHm_Chr6g0309541
rosa_laevigata	RLG00000010555
rosa_multiflora	Rmu_co8522085.1_g000003 Rmu_sc0007283.1_g000011 Rmu_sc0024715.1_g000004 Rmu_sc0030536.1_g000005
rosa_roxburghii	Rroxscaffold_7G00159320
rosa_rugosa	Rorug06G0372700
rosa_samantha	Rh6AG486100 Rh6BG495500 Rh6CG500500 Rh6DG486400
rosa_wichuraiana	Rw6G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	877
AccBSI	CCGCTC	1 cut(s)	271
AccII	CGCG	1 cut(s)	278
AciI	CCGC	1 cut(s)	269
AclI	AACGTT	1 cut(s)	104
AcsI	RAATTY	1 cut(s)	437
AcuI	CTGAAG	3 cut(s)	565, 1057, 1092
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	1 cut(s)	497
AfiI	CCNNNNNNNGG	3 cut(s)	45, 475, 859
AgsI	TTSAA	3 cut(s)	139, 637, 725
AjnI	CCWGG	2 cut(s)	730, 1010
AluBI	AGCT	4 cut(s)	21, 384, 466, 739
AluI	AGCT	4 cut(s)	21, 384, 466, 739
Alw21I	GWGCWC	3 cut(s)	23, 386, 468
Alw26I	GTCTC	4 cut(s)	147, 340, 648, 708
AoxI	GGCC	3 cut(s)	358, 850, 983
ApeKI	GCWGC	3 cut(s)	91, 323, 972
ApoI	RAATTY	1 cut(s)	437
ArsI	GACNNNNNNTTYG	2 cut(s)	1028, 1060
AspLEI	GCGC	4 cut(s)	278, 285, 323, 587
AspS9I	GGNCC	2 cut(s)	48, 329
AsuC2I	CCSGG	1 cut(s)	662
AsuHPI	GGTGA	3 cut(s)	147, 192, 221
AsuII	TTCGAA	1 cut(s)	557
AvaII	GGWCC	2 cut(s)	48, 329
BanI	GGYRCC	1 cut(s)	877
BanII	GRGCYC	4 cut(s)	23, 386, 468, 1043
Bbv12I	GWGCWC	3 cut(s)	23, 386, 468
BbvI	GCAGC	3 cut(s)	78, 310, 959
BccI	CCATC	4 cut(s)	25, 356, 927, 1053
BciT130I	CCWGG	2 cut(s)	732, 1012
BciVI	GTATCC	1 cut(s)	586
BclI	TGATCA	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	662
BcoDI	GTCTC	4 cut(s)	147, 340, 648, 708
BfaI	CTAG	1 cut(s)	537
BfmI	CTRYAG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	276
BfuI	GTATCC	1 cut(s)	586
BisI	GCNGC	4 cut(s)	92, 269, 324, 973
BlsI	GCNGC	4 cut(s)	93, 270, 325, 974
Bme1390I	CCNGG	3 cut(s)	662, 732, 1012
Bme18I	GGWCC	2 cut(s)	48, 329
BmgT120I	GGNCC	2 cut(s)	48, 329
BmiI	GGNNCC	3 cut(s)	666, 879, 1031
BmrFI	CCNGG	3 cut(s)	662, 732, 1012
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	2 cut(s)	940, 958
BmuI	ACTGGG	1 cut(s)	229
BplI	GAGNNNNNCTC	2 cut(s)	656, 688
BpmI	CTGGAG	4 cut(s)	92, 175, 471, 753
Bpu14I	TTCGAA	1 cut(s)	557
BpuMI	CCSGG	1 cut(s)	662
BsaHI	GRCGYC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	648
BsaJI	CCNNGG	1 cut(s)	660
BsaWI	WCCGGW	1 cut(s)	58
BsaXI	ACNNNNNCTCC	4 cut(s)	167, 197, 726, 756
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 475, 859
Bse1I	ACTGG	5 cut(s)	192, 235, 332, 488, 594
BseBI	CCWGG	2 cut(s)	732, 1012
BseDI	CCNNGG	1 cut(s)	660
BseGI	GGATG	1 cut(s)	422
BseLI	CCNNNNNNNGG	3 cut(s)	45, 475, 859
BseMII	CTCAG	4 cut(s)	107, 616, 687, 978
BseNI	ACTGG	5 cut(s)	192, 235, 332, 488, 594
BseRI	GAGGAG	3 cut(s)	77, 175, 178
BseXI	GCAGC	3 cut(s)	78, 310, 959
Bsh1236I	CGCG	1 cut(s)	278
BshFI	GGCC	3 cut(s)	360, 852, 985
BshNI	GGYRCC	1 cut(s)	877
BsiHKAI	GWGCWC	3 cut(s)	23, 386, 468
BsiSI	CCGG	6 cut(s)	26, 39, 59, 662, 1052, 1094
BslI	CCNNNNNNNGG	3 cut(s)	45, 475, 859
BsmAI	GTCTC	4 cut(s)	147, 340, 648, 708
BsnI	GGCC	3 cut(s)	360, 852, 985
Bso31I	GGTCTC	1 cut(s)	648
Bsp119I	TTCGAA	1 cut(s)	557
Bsp1286I	GDGCHC	4 cut(s)	23, 386, 468, 1043
Bsp143I	GATC	2 cut(s)	119, 432
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	3 cut(s)	360, 852, 985
BspCNI	CTCAG	4 cut(s)	108, 615, 686, 979
BspFNI	CGCG	1 cut(s)	278
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	3 cut(s)	666, 879, 1031
BspMAI	CTGCAG	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	276
BspT104I	TTCGAA	1 cut(s)	557
BspT107I	GGYRCC	1 cut(s)	877
BspTNI	GGTCTC	1 cut(s)	648
BsrBI	CCGCTC	1 cut(s)	271
BsrI	ACTGG	5 cut(s)	192, 235, 332, 488, 594
BssECI	CCNNGG	1 cut(s)	660
BssMI	GATC	2 cut(s)	119, 432
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	2 cut(s)	732, 1012
Bst6I	CTCTTC	3 cut(s)	184, 214, 520
BstACI	GRCGYC	1 cut(s)	36
BstBI	TTCGAA	1 cut(s)	557
BstC8I	GCNNGC	3 cut(s)	23, 131, 362
BstDEI	CTNAG	4 cut(s)	116, 602, 673, 987
BstF5I	GGATG	1 cut(s)	422
BstFNI	CGCG	1 cut(s)	278
BstHHI	GCGC	4 cut(s)	278, 285, 323, 587
BstKTI	GATC	2 cut(s)	122, 435
BstMAI	GTCTC	4 cut(s)	147, 340, 648, 708
BstMBI	GATC	2 cut(s)	119, 432
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstNI	CCWGG	2 cut(s)	732, 1012
BstSCI	CCNGG	3 cut(s)	660, 730, 1010
BstSFI	CTRYAG	1 cut(s)	324
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	3 cut(s)	78, 310, 959
BsuI	GTATCC	1 cut(s)	586
BsuRI	GGCC	3 cut(s)	360, 852, 985
BtsCI	GGATG	1 cut(s)	422
BtsIMutI	CAGTG	5 cut(s)	242, 587, 610, 1053, 1116
BveI	ACCTGC	1 cut(s)	276
Cac8I	GCNNGC	3 cut(s)	23, 131, 362
CciI	TCATGA	1 cut(s)	411
CfoI	GCGC	4 cut(s)	278, 285, 323, 587
Cfr13I	GGNCC	2 cut(s)	48, 329
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	496
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	6 cut(s)	220, 412, 508, 570, 826, 981
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	4 cut(s)	116, 602, 673, 987
DpnI	GATC	2 cut(s)	121, 434
DpnII	GATC	2 cut(s)	119, 432
Eam1104I	CTCTTC	3 cut(s)	184, 214, 520
EarI	CTCTTC	3 cut(s)	184, 214, 520
Ecl136II	GAGCTC	3 cut(s)	21, 384, 466
Eco24I	GRGCYC	4 cut(s)	23, 386, 468, 1043
Eco31I	GGTCTC	1 cut(s)	648
Eco47I	GGWCC	2 cut(s)	48, 329
Eco53kI	GAGCTC	3 cut(s)	21, 384, 466
Eco57I	CTGAAG	3 cut(s)	565, 1057, 1092
EcoICRI	GAGCTC	3 cut(s)	21, 384, 466
EcoRII	CCWGG	2 cut(s)	730, 1010
EcoT22I	ATGCAT	1 cut(s)	982
EcoT38I	GRGCYC	4 cut(s)	23, 386, 468, 1043
FaeI	CATG	6 cut(s)	223, 415, 511, 573, 829, 984
FalI	AAGNNNNNCTT	2 cut(s)	1048, 1080
FatI	CATG	6 cut(s)	219, 411, 507, 569, 825, 980
FbaI	TGATCA	1 cut(s)	432
Fnu4HI	GCNGC	4 cut(s)	92, 269, 324, 973
FokI	GGATG	1 cut(s)	409
FriOI	GRGCYC	4 cut(s)	23, 386, 468, 1043
Fsp4HI	GCNGC	4 cut(s)	92, 269, 324, 973
FspBI	CTAG	1 cut(s)	537
GlaI	GCGC	4 cut(s)	277, 284, 322, 586
GluI	GCNGC	4 cut(s)	92, 269, 324, 973
GsuI	CTGGAG	4 cut(s)	92, 175, 471, 753
HaeIII	GGCC	3 cut(s)	360, 852, 985
HapII	CCGG	6 cut(s)	26, 39, 59, 662, 1052, 1094
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	4 cut(s)	278, 285, 323, 587
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	6 cut(s)	223, 415, 511, 573, 829, 984
Hin6I	GCGC	4 cut(s)	276, 283, 321, 585
HinP1I	GCGC	4 cut(s)	276, 283, 321, 585
HinfI	GANTC	3 cut(s)	263, 554, 991
HpaII	CCGG	6 cut(s)	26, 39, 59, 662, 1052, 1094
HphI	GGTGA	3 cut(s)	147, 192, 221
Hpy188I	TCNGA	2 cut(s)	15, 307
Hpy188III	TCNNGA	4 cut(s)	71, 412, 426, 819
HpyAV	CCTTC	3 cut(s)	214, 761, 842
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	3 cut(s)	129, 326, 980
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
HpyF3I	CTNAG	4 cut(s)	116, 602, 673, 987
HpySE526I	ACGT	1 cut(s)	104
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	6 cut(s)	223, 415, 511, 573, 829, 984
HspAI	GCGC	4 cut(s)	276, 283, 321, 585
Ksp22I	TGATCA	1 cut(s)	432
Kzo9I	GATC	2 cut(s)	119, 432
LmnI	GCTCC	4 cut(s)	73, 471, 664, 1035
Lsp1109I	GCAGC	3 cut(s)	78, 310, 959
LweI	GCATC	2 cut(s)	940, 958
MaeI	CTAG	1 cut(s)	537
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	3 cut(s)	404, 605, 914
MalI	GATC	2 cut(s)	121, 434
MbiI	CCGCTC	1 cut(s)	271
MboI	GATC	2 cut(s)	119, 432
MboII	GAAGA	6 cut(s)	171, 201, 381, 507, 516, 790
MhlI	GDGCHC	4 cut(s)	23, 386, 468, 1043
MluCI	AATT	5 cut(s)	308, 437, 597, 839, 856
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	75
Mph1103I	ATGCAT	1 cut(s)	982
MseI	TTAA	1 cut(s)	959
MspI	CCGG	6 cut(s)	26, 39, 59, 662, 1052, 1094
MspR9I	CCNGG	3 cut(s)	662, 732, 1012
MvaI	CCWGG	2 cut(s)	732, 1012
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	282
NciI	CCSGG	1 cut(s)	662
NdeII	GATC	2 cut(s)	119, 432
NlaIII	CATG	6 cut(s)	223, 415, 511, 573, 829, 984
NlaIV	GGNNCC	3 cut(s)	666, 879, 1031
NmeAIII	GCCGAG	2 cut(s)	252, 405
NmuCI	GTSAC	1 cut(s)	605
NsiI	ATGCAT	1 cut(s)	982
NspV	TTCGAA	1 cut(s)	557
PagI	TCATGA	1 cut(s)	411
PfeI	GAWTC	2 cut(s)	554, 991
PflFI	GACNNNGTC	1 cut(s)	418
PfoI	TCCNGGA	1 cut(s)	1010
PkrI	GCNGC	4 cut(s)	93, 270, 325, 974
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Psp124BI	GAGCTC	3 cut(s)	23, 386, 468
Psp1406I	AACGTT	1 cut(s)	104
Psp6I	CCWGG	2 cut(s)	730, 1010
PspGI	CCWGG	2 cut(s)	730, 1010
PspN4I	GGNNCC	3 cut(s)	666, 879, 1031
PspPI	GGNCC	2 cut(s)	48, 329
PstI	CTGCAG	1 cut(s)	328
PsyI	GACNNNGTC	1 cut(s)	418
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
SacI	GAGCTC	3 cut(s)	23, 386, 468
SaqAI	TTAA	1 cut(s)	959
SatI	GCNGC	4 cut(s)	92, 269, 324, 973
Sau3AI	GATC	2 cut(s)	119, 432
Sau96I	GGNCC	2 cut(s)	48, 329
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	3 cut(s)	662, 732, 1012
SduI	GDGCHC	4 cut(s)	23, 386, 468, 1043
SfaNI	GCATC	2 cut(s)	940, 958
SfcI	CTRYAG	1 cut(s)	324
SfuI	TTCGAA	1 cut(s)	557
SinI	GGWCC	2 cut(s)	48, 329
Sse9I	AATT	5 cut(s)	308, 437, 597, 839, 856
SsiI	CCGC	1 cut(s)	269
SspI	AATATT	2 cut(s)	502, 721
SspMI	CTAG	1 cut(s)	537
SstI	GAGCTC	3 cut(s)	23, 386, 468
StyD4I	CCNGG	3 cut(s)	660, 730, 1010
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	4 cut(s)	557, 656, 751, 818
TasI	AATT	5 cut(s)	308, 437, 597, 839, 856
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	2 cut(s)	554, 991
Tru1I	TTAA	1 cut(s)	959
Tru9I	TTAA	1 cut(s)	959
TscAI	CASTG	5 cut(s)	242, 594, 610, 1053, 1116
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	3 cut(s)	91, 323, 972
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	6 cut(s)	154, 400, 496, 620, 780, 842
TspRI	CASTG	5 cut(s)	242, 594, 610, 1053, 1116
Tth111I	GACNNNGTC	1 cut(s)	418
VpaK11BI	GGWCC	2 cut(s)	48, 329
XapI	RAATTY	1 cut(s)	437
XspI	CTAG	1 cut(s)	537
Zsp2I	ATGCAT	1 cut(s)	982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.