Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0012387

Physical Location & Seq

Genomic Coordinates Reverse (-)

69678085 .. 69679410

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG495500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGTTCTCAAAGCCCCACTGTTTTCAGATGAATCAAATACCATCCCCCATGTCCAAGTCTCCAATGAGCTCGCCGGAGATGGACGCCGGAATATGGAGCAACCTACCGGAGGAACTCCTGGACCGTATTCTCTCCATGCTGCCTCTCAAAACCTTCATGGTTCTGAGATCAACTTGCAAGCATTTCAAGTCTCTGTTATTCTCTCCCACTTTCATTTCCAAGCACTCTTCCTCCAATTCCTCACTACCCTTCTCTTCTTTTCTCATGCTTTCTCACCCGCAGTGCTATCCCGACTTCCCTCTCTACGACTTGCAGCTCTGCGCGTGGCGCAGCTTCGCTCTTTCACTCTCGGAATTGCTACCCTGCGCTGCTGCAGGACCAGTCTCTCTGCTCTCGATCTCCAACGGGCTGCTCTGTTTCTCTCTGCCCAGCTCGCCTTCCTTTGTTGTCTGTAACTTCTTGACCAAGTCATCGAGAGTGATCGAATACCCTACCTACCCTTTTCATTTTGAGCTGCTTACTCTGGTTTCCACTCCAGTTGGGTACAATATCTTCATGCTCTCTTCTGAGTCTTCCACCAAGACCAGAACCTTTGTATATGATTCGAAGGTCCAGTCTTGGCAAAATTTAATCTCATTGGATACAATTCTCAGTGACAATCATCATCAAGAAGGTGTTCATTTCAATGGGTCTCTCTACTTTTCGACCCCGGAGCCATTCTCAATTGTCAACTTTCATTTGGAGAGTGGTAAATGGGAGAGACACAATACTGAACTCCCCGGAGAGCTCGTTTTTGTTCGATTAGTGAGTGATGAAGGAAAAGGGAAGATGTATTTGATTGGTGGGATTGGTAGGAATGGGATTTCAAGGAGAATGAAAATCTGGGAACTGTGTGAAGGAAAGAATTGGATGGAGATTGAGAGTGTGCCTGAAATGATGTGCAGAAAGATAATGTCAGTTTGTTACCATAATTACGAACATCTCTATTGCTTTTGGCATCAGGGTTTAATCTGTGTTTGCTGCTATGCGTGGCCTGAGATTTTGTATTACAAGGTTTCGAGGAGGACTTGGCATTGGCTCCCCAAAAGCCCTTCGGTGCCGGAAAGATGGGCTTGTGGCTTCAGGTGGTTTTCTTTTGTGCCGGAGTTGTATGCTTCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

387

Amino Acids

44.54

Weight (kDa)

7.54

Isoelectric Point (pI)

62.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	32 - 71	1.2e-08	F-box domain
F-box-like	PF12937	32 - 70	1.2e-06	F-box-like
FBA_1	PF07734	134 - 236	1.9e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43190
fragaria_vesca	FvH4_2g33130
malus_domestica	MD08G1084200.v1.1 MD15G1070300.v1.1
prunus_persica	Prupe.1G423100_v2.0.a1
pyrus_communis	pycom08g06980
rosa_chinensis	RchiOBHm_Chr6g0309541
rosa_laevigata	RLG00000010555
rosa_multiflora	Rmu_co8522085.1_g000003 Rmu_sc0007283.1_g000011 Rmu_sc0024715.1_g000004 Rmu_sc0030536.1_g000005
rosa_roxburghii	Rroxscaffold_7G00159320
rosa_rugosa	Rorug06G0372700
rosa_samantha	Rh6AG486100 Rh6BG495500 Rh6CG500500 Rh6DG486400
rosa_wichuraiana	Rw6G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1096
AccII	CGCG	1 cut(s)	323
AciI	CCGC	1 cut(s)	278
AcsI	RAATTY	1 cut(s)	625
AcuI	CTGAAG	2 cut(s)	1105, 1140
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	545
AfiI	CCNNNNNNNGG	2 cut(s)	93, 109
AgsI	TTSAA	3 cut(s)	187, 685, 867
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	6 cut(s)	69, 316, 333, 432, 514, 787
AluI	AGCT	6 cut(s)	69, 316, 333, 432, 514, 787
Alw21I	GWGCWC	2 cut(s)	71, 789
Alw26I	GTCTC	5 cut(s)	63, 195, 388, 696, 754
AoxI	GGCC	1 cut(s)	1031
ApeKI	GCWGC	8 cut(s)	139, 313, 330, 368, 371, 409, 514, 1020
ApoI	RAATTY	1 cut(s)	625
ArsI	GACNNNNNNTTYG	2 cut(s)	599, 631
Asp700I	GAANNNNTTC	1 cut(s)	675
AspLEI	GCGC	3 cut(s)	323, 330, 368
AspS9I	GGNCC	3 cut(s)	121, 377, 610
AsuC2I	CCSGG	2 cut(s)	710, 780
AsuHPI	GGTGA	1 cut(s)	266
AsuII	TTCGAA	1 cut(s)	605
AvaII	GGWCC	3 cut(s)	121, 377, 610
BanI	GGYRCC	1 cut(s)	1096
BanII	GRGCYC	2 cut(s)	71, 789
BarI	GAAGNNNNNNTAC	2 cut(s)	536, 568
BbsI	GAAGAC	1 cut(s)	564
Bbv12I	GWGCWC	2 cut(s)	71, 789
BbvI	GCAGC	8 cut(s)	126, 325, 342, 355, 358, 396, 501, 1007
BccI	CCATC	4 cut(s)	49, 73, 904, 1101
BciT130I	CCWGG	1 cut(s)	119
BciVI	GTATCC	1 cut(s)	634
BcnI	CCSGG	2 cut(s)	710, 780
BcoDI	GTCTC	5 cut(s)	63, 195, 388, 696, 754
BfmI	CTRYAG	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	634
BisI	GCNGC	8 cut(s)	140, 314, 331, 369, 372, 410, 515, 1021
BlsI	GCNGC	8 cut(s)	141, 315, 332, 370, 373, 411, 516, 1022
Bme1390I	CCNGG	3 cut(s)	119, 710, 780
Bme18I	GGWCC	3 cut(s)	121, 377, 610
BmgT120I	GGNCC	3 cut(s)	121, 377, 610
BmiI	GGNNCC	3 cut(s)	714, 1079, 1098
BmrFI	CCNGG	3 cut(s)	119, 710, 780
BmsI	GCATC	1 cut(s)	1006
BpiI	GAAGAC	1 cut(s)	564
BplI	GAGNNNNNCTC	2 cut(s)	704, 736
BpmI	CTGGAG	1 cut(s)	519
Bpu14I	TTCGAA	1 cut(s)	605
BpuMI	CCSGG	2 cut(s)	710, 780
BsaHI	GRCGYC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	696
BsaJI	CCNNGG	2 cut(s)	708, 778
BsaWI	WCCGGW	1 cut(s)	106
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 774, 804
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 109
Bse1I	ACTGG	3 cut(s)	380, 536, 613
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	2 cut(s)	708, 778
BseGI	GGATG	2 cut(s)	41, 915
BseLI	CCNNNNNNNGG	2 cut(s)	93, 109
BseMII	CTCAG	4 cut(s)	155, 558, 664, 1026
BseNI	ACTGG	3 cut(s)	380, 536, 613
BseRI	GAGGAG	1 cut(s)	1075
BseXI	GCAGC	8 cut(s)	126, 325, 342, 355, 358, 396, 501, 1007
BseYI	CCCAGC	1 cut(s)	428
BsgI	GTGCAG	1 cut(s)	961
Bsh1236I	CGCG	1 cut(s)	323
BshFI	GGCC	1 cut(s)	1033
BshNI	GGYRCC	1 cut(s)	1096
BsiHKAI	GWGCWC	2 cut(s)	71, 789
BsiSI	CCGG	7 cut(s)	74, 87, 107, 710, 780, 1100, 1142
BslI	CCNNNNNNNGG	2 cut(s)	93, 109
BsmAI	GTCTC	5 cut(s)	63, 195, 388, 696, 754
BsnI	GGCC	1 cut(s)	1033
Bso31I	GGTCTC	1 cut(s)	696
Bsp119I	TTCGAA	1 cut(s)	605
Bsp1286I	GDGCHC	2 cut(s)	71, 789
Bsp143I	GATC	3 cut(s)	167, 396, 480
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	1 cut(s)	1033
BspCNI	CTCAG	4 cut(s)	156, 559, 663, 1027
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	3 cut(s)	714, 1079, 1098
BspMAI	CTGCAG	1 cut(s)	376
BspT104I	TTCGAA	1 cut(s)	605
BspT107I	GGYRCC	1 cut(s)	1096
BspTNI	GGTCTC	1 cut(s)	696
BsrI	ACTGG	3 cut(s)	380, 536, 613
BssECI	CCNNGG	2 cut(s)	708, 778
BssMI	GATC	3 cut(s)	167, 396, 480
BssNI	GRCGYC	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	3 cut(s)	20, 125, 891
Bst6I	CTCTTC	3 cut(s)	232, 259, 568
BstACI	GRCGYC	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	605
BstC8I	GCNNGC	3 cut(s)	71, 179, 434
BstDEI	CTNAG	4 cut(s)	164, 567, 650, 1035
BstENI	CCTNNNNNAGG	1 cut(s)	107
BstF5I	GGATG	2 cut(s)	41, 915
BstFNI	CGCG	1 cut(s)	323
BstHHI	GCGC	3 cut(s)	323, 330, 368
BstKTI	GATC	3 cut(s)	170, 399, 483
BstMAI	GTCTC	5 cut(s)	63, 195, 388, 696, 754
BstMBI	GATC	3 cut(s)	167, 396, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	327, 433
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	3 cut(s)	117, 708, 778
BstSFI	CTRYAG	1 cut(s)	372
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	8 cut(s)	126, 325, 342, 355, 358, 396, 501, 1007
BstV2I	GAAGAC	1 cut(s)	564
BsuI	GTATCC	1 cut(s)	634
BsuRI	GGCC	1 cut(s)	1033
BtsCI	GGATG	2 cut(s)	41, 915
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	4 cut(s)	16, 287, 658, 1164
Cac8I	GCNNGC	3 cut(s)	71, 179, 434
CfoI	GCGC	3 cut(s)	323, 330, 368
Cfr13I	GGNCC	3 cut(s)	121, 377, 610
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	544
CspCI	CAANNNNNGTGG	2 cut(s)	520, 555
CviAII	CATG	5 cut(s)	49, 136, 157, 265, 556
CviQI	GTAC	1 cut(s)	544
DdeI	CTNAG	4 cut(s)	164, 567, 650, 1035
DpnI	GATC	3 cut(s)	169, 398, 482
DpnII	GATC	3 cut(s)	167, 396, 480
Eam1104I	CTCTTC	3 cut(s)	232, 259, 568
EarI	CTCTTC	3 cut(s)	232, 259, 568
Ecl136II	GAGCTC	2 cut(s)	69, 787
Eco24I	GRGCYC	2 cut(s)	71, 789
Eco31I	GGTCTC	1 cut(s)	696
Eco47I	GGWCC	3 cut(s)	121, 377, 610
Eco53kI	GAGCTC	2 cut(s)	69, 787
Eco57I	CTGAAG	2 cut(s)	1105, 1140
EcoICRI	GAGCTC	2 cut(s)	69, 787
EcoNI	CCTNNNNNAGG	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	117
EcoT38I	GRGCYC	2 cut(s)	71, 789
FaeI	CATG	5 cut(s)	52, 139, 160, 268, 559
FalI	AAGNNNNNCTT	2 cut(s)	1096, 1128
FatI	CATG	5 cut(s)	48, 135, 156, 264, 555
FauI	CCCGC	1 cut(s)	285
Fnu4HI	GCNGC	8 cut(s)	140, 314, 331, 369, 372, 410, 515, 1021
FokI	GGATG	2 cut(s)	28, 922
FriOI	GRGCYC	2 cut(s)	71, 789
Fsp4HI	GCNGC	8 cut(s)	140, 314, 331, 369, 372, 410, 515, 1021
GlaI	GCGC	3 cut(s)	322, 329, 367
GluI	GCNGC	8 cut(s)	140, 314, 331, 369, 372, 410, 515, 1021
GsaI	CCCAGC	1 cut(s)	432
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	1 cut(s)	1033
HapII	CCGG	7 cut(s)	74, 87, 107, 710, 780, 1100, 1142
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	3 cut(s)	323, 330, 368
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	5 cut(s)	52, 139, 160, 268, 559
Hin6I	GCGC	3 cut(s)	321, 328, 366
HinP1I	GCGC	3 cut(s)	321, 328, 366
HincII	GTYRAC	1 cut(s)	730
HindII	GTYRAC	1 cut(s)	730
HinfI	GANTC	3 cut(s)	31, 569, 602
HpaII	CCGG	7 cut(s)	74, 87, 107, 710, 780, 1100, 1142
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	730
Hpy188I	TCNGA	4 cut(s)	27, 165, 352, 568
Hpy188III	TCNNGA	5 cut(s)	290, 394, 460, 474, 668
Hpy8I	GTNNAC	1 cut(s)	730
HpyAV	CCTTC	8 cut(s)	163, 259, 447, 601, 665, 809, 890, 1101
HpyCH4III	ACNGT	3 cut(s)	20, 125, 891
HpyCH4V	TGCA	4 cut(s)	177, 313, 374, 942
HpyF10VI	GCNNNNNNNGC	2 cut(s)	327, 433
HpyF3I	CTNAG	4 cut(s)	164, 567, 650, 1035
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	5 cut(s)	52, 139, 160, 268, 559
HspAI	GCGC	3 cut(s)	321, 328, 366
Kzo9I	GATC	3 cut(s)	167, 396, 480
LmnI	GCTCC	3 cut(s)	96, 712, 1083
Lsp1109I	GCAGC	8 cut(s)	126, 325, 342, 355, 358, 396, 501, 1007
LweI	GCATC	1 cut(s)	1006
MaeIII	GTNAC	3 cut(s)	452, 653, 962
MalI	GATC	3 cut(s)	169, 398, 482
MboI	GATC	3 cut(s)	167, 396, 480
MboII	GAAGA	6 cut(s)	219, 246, 544, 555, 564, 838
MfeI	CAATTG	1 cut(s)	723
MhlI	GDGCHC	2 cut(s)	71, 789
MluCI	AATT	7 cut(s)	235, 353, 625, 645, 723, 904, 970
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	1 cut(s)	426
MnlI	CCTC	7 cut(s)	103, 153, 241, 250, 309, 1053, 1056
MroXI	GAANNNNTTC	1 cut(s)	675
MseI	TTAA	2 cut(s)	629, 1007
MslI	CAYNNNNRTG	1 cut(s)	684
MspI	CCGG	7 cut(s)	74, 87, 107, 710, 780, 1100, 1142
MspR9I	CCNGG	3 cut(s)	119, 710, 780
MunI	CAATTG	1 cut(s)	723
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	2 cut(s)	327, 433
NciI	CCSGG	2 cut(s)	710, 780
NdeII	GATC	3 cut(s)	167, 396, 480
NlaIII	CATG	5 cut(s)	52, 139, 160, 268, 559
NlaIV	GGNNCC	3 cut(s)	714, 1079, 1098
NmuCI	GTSAC	1 cut(s)	653
NspV	TTCGAA	1 cut(s)	605
PdmI	GAANNNNTTC	1 cut(s)	675
PfeI	GAWTC	2 cut(s)	31, 602
PflFI	GACNNNGTC	1 cut(s)	466
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	8 cut(s)	141, 315, 332, 370, 373, 411, 516, 1022
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
Psp124BI	GAGCTC	2 cut(s)	71, 789
Psp6I	CCWGG	1 cut(s)	117
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	3 cut(s)	714, 1079, 1098
PspPI	GGNCC	3 cut(s)	121, 377, 610
PstI	CTGCAG	1 cut(s)	376
PsyI	GACNNNGTC	1 cut(s)	466
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
RseI	CAYNNNNRTG	1 cut(s)	684
SacI	GAGCTC	2 cut(s)	71, 789
SaqAI	TTAA	2 cut(s)	629, 1007
SatI	GCNGC	8 cut(s)	140, 314, 331, 369, 372, 410, 515, 1021
Sau3AI	GATC	3 cut(s)	167, 396, 480
Sau96I	GGNCC	3 cut(s)	121, 377, 610
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	3 cut(s)	119, 710, 780
SduI	GDGCHC	2 cut(s)	71, 789
SfaNI	GCATC	1 cut(s)	1006
SfcI	CTRYAG	1 cut(s)	372
SfuI	TTCGAA	1 cut(s)	605
SinI	GGWCC	3 cut(s)	121, 377, 610
SmiMI	CAYNNNNRTG	1 cut(s)	684
Sse9I	AATT	7 cut(s)	235, 353, 625, 645, 723, 904, 970
SsiI	CCGC	1 cut(s)	278
SstI	GAGCTC	2 cut(s)	71, 789
StyD4I	CCNGG	3 cut(s)	117, 708, 778
TaaI	ACNGT	3 cut(s)	20, 125, 891
TaqI	TCGA	7 cut(s)	395, 473, 483, 605, 704, 799, 1058
TasI	AATT	7 cut(s)	235, 353, 625, 645, 723, 904, 970
TfiI	GAWTC	2 cut(s)	31, 602
Tru1I	TTAA	2 cut(s)	629, 1007
Tru9I	TTAA	2 cut(s)	629, 1007
TscAI	CASTG	4 cut(s)	23, 287, 658, 1164
TseFI	GTSAC	1 cut(s)	653
TseI	GCWGC	8 cut(s)	139, 313, 330, 368, 371, 409, 514, 1020
Tsp45I	GTSAC	1 cut(s)	653
TspDTI	ATGAA	9 cut(s)	44, 145, 202, 494, 544, 668, 725, 828, 890
TspRI	CASTG	4 cut(s)	23, 287, 658, 1164
Tth111I	GACNNNGTC	1 cut(s)	466
VpaK11BI	GGWCC	3 cut(s)	121, 377, 610
XagI	CCTNNNNNAGG	1 cut(s)	107
XapI	RAATTY	1 cut(s)	625
XmnI	GAANNNNTTC	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.