Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0012387

Physical Location & Seq

Genomic Coordinates Reverse (-)

65842104 .. 65843234

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G042340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGAATCAAATACCACCCCCCATGTCCAAGTCTCCAATGAGCTCGCCGGAGATGGACGCCGGAATATGGAGCAACTTACCGGAGGAACTCCTGGATCGTGTTCTCTCCATGCTGCCTCTCAAAACCTTCATGGTTCTGAGATCAACTTGCAAGCATTTCAAGTCTCTGTTATTCTCTCCCACTTTCATTTCCAAGCACTCTTCCTCCAATTCCTCGCCTTTCTCTTCTTTTCTCATGCTTTCTCACCCGCAGTGCTATCCCGACTTCCCTCTCTACGACTCGCAGCTCTGCGCGTGGCGCAGCTTCGCTCTTTCACTCTCGGAATTGCTACCCTGCGCTGCAGGACCAGTCTCTCTGCTCTCCATCTCCAATGGGCTGCTCTGTTTCTCTCTGCCCGGCTCGTCTTCCTTTGTTGTCTGTAACTTCTTGACCAAGTCATCGAGAGTGATCCAATACCCTACCTACCCTTTTCATTTTGAGCTGCTTACTCTGGTTTCCACTCGAGTTGGGTACAATATTTTCATGCTCTCTTCTGAGTCTTCCACCAAGACTAGAACCTTTGTATATGATTCGAAGGCCCAGTCTTGGCAAAATTTAATCTCATTGGATACAATTCTCAGTGACAATCATCATCAAGAAGGTGTTCATTTCAATGGGTCTCTCTACTTTTCGACCCCGGAGCCATTCTCAATTGTCAACTTTAATTTGGAGAGTGGTAAATGGGAGAGACACAATACTGAACTCCCCGGAGAGCTCGTTTTTGTTCGATTAGTGAGTGATGAAGGAAAAGGGAAGATGTATTTGATTGGTGGGATTGGTAGGAATGGGATTTCAAGGAGAATGAAAATCTGGGAACTGTGTGAAGGAAAGAATTGGGTGGAGATTGAGAGTGTGCCTGAAATGATGTGCAGAAAGATAATGTCAGTTTGTTACCATAATTACGAGCATCTCTATTGCTTTTGGCATCAGGGTTTAATCTGTGTTTGCTGCTATGCGTGGCCTGAGATTTTGTATTACAAGGTTTCGAGGAAGACTTGGCATTGGCTCCCCAAAAGCCCTTTGGTGCCGGAAAGATGGGCTTGTGGCTTCAGGTGGTTTTCTTTTGTGCCGGAGTTGTATGCTTCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

376

Amino Acids

43.15

Weight (kDa)

7.89

Isoelectric Point (pI)

57.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	23 - 62	2.4e-08	F-box domain
F-box-like	PF12937	23 - 61	4.9e-06	F-box-like
FBA_1	PF07734	123 - 225	3.6e-08	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43190
fragaria_vesca	FvH4_2g33130
malus_domestica	MD08G1084200.v1.1 MD15G1070300.v1.1
prunus_persica	Prupe.1G423100_v2.0.a1
pyrus_communis	pycom08g06980
rosa_chinensis	RchiOBHm_Chr6g0309541
rosa_laevigata	RLG00000010555
rosa_multiflora	Rmu_co8522085.1_g000003 Rmu_sc0007283.1_g000011 Rmu_sc0024715.1_g000004 Rmu_sc0030536.1_g000005
rosa_roxburghii	Rroxscaffold_7G00159320
rosa_rugosa	Rorug06G0372700
rosa_samantha	Rh6AG486100 Rh6BG495500 Rh6CG500500 Rh6DG486400
rosa_wichuraiana	Rw6G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1063
AccII	CGCG	1 cut(s)	293
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	2 cut(s)	102, 442
AcsI	RAATTY	1 cut(s)	592
AcuI	CTGAAG	2 cut(s)	1072, 1107
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	1 cut(s)	512
AfiI	CCNNNNNNNGG	2 cut(s)	66, 585
AgsI	TTSAA	3 cut(s)	160, 652, 834
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	5 cut(s)	42, 286, 303, 481, 754
AluI	AGCT	5 cut(s)	42, 286, 303, 481, 754
Alw21I	GWGCWC	2 cut(s)	44, 756
Alw26I	GTCTC	5 cut(s)	36, 168, 355, 663, 721
AlwI	GGATC	2 cut(s)	102, 442
Ama87I	CYCGRG	1 cut(s)	501
AoxI	GGCC	2 cut(s)	576, 998
ApeKI	GCWGC	7 cut(s)	112, 283, 300, 338, 376, 481, 987
ApoI	RAATTY	1 cut(s)	592
ArsI	GACNNNNNNTTYG	2 cut(s)	566, 598
Asp700I	GAANNNNTTC	1 cut(s)	642
AspLEI	GCGC	3 cut(s)	293, 300, 338
AspS9I	GGNCC	2 cut(s)	344, 577
AsuC2I	CCSGG	3 cut(s)	396, 677, 747
AsuHPI	GGTGA	1 cut(s)	236
AsuII	TTCGAA	1 cut(s)	572
AvaI	CYCGRG	1 cut(s)	501
AvaII	GGWCC	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	1063
BanII	GRGCYC	2 cut(s)	44, 756
BbsI	GAAGAC	3 cut(s)	396, 531, 1037
Bbv12I	GWGCWC	2 cut(s)	44, 756
BbvI	GCAGC	7 cut(s)	99, 295, 312, 325, 363, 468, 974
BccI	CCATC	3 cut(s)	46, 371, 1068
BciT130I	CCWGG	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	601
BcnI	CCSGG	3 cut(s)	396, 677, 747
BcoDI	GTCTC	5 cut(s)	36, 168, 355, 663, 721
BfaI	CTAG	1 cut(s)	552
BfmI	CTRYAG	1 cut(s)	339
BfuI	GTATCC	1 cut(s)	601
BisI	GCNGC	7 cut(s)	113, 284, 301, 339, 377, 482, 988
BlsI	GCNGC	7 cut(s)	114, 285, 302, 340, 378, 483, 989
Bme1390I	CCNGG	4 cut(s)	92, 396, 677, 747
Bme18I	GGWCC	1 cut(s)	344
BmeT110I	CYCGRG	1 cut(s)	501
BmgT120I	GGNCC	2 cut(s)	344, 577
BmiI	GGNNCC	3 cut(s)	681, 1046, 1065
BmrFI	CCNGG	4 cut(s)	92, 396, 677, 747
BmrI	ACTGGG	1 cut(s)	574
BmsI	GCATC	2 cut(s)	955, 973
BmuI	ACTGGG	1 cut(s)	574
BpiI	GAAGAC	3 cut(s)	396, 531, 1037
BplI	GAGNNNNNCTC	2 cut(s)	671, 703
Bpu14I	TTCGAA	1 cut(s)	572
BpuMI	CCSGG	3 cut(s)	396, 677, 747
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	663
BsaJI	CCNNGG	2 cut(s)	675, 745
BsaWI	WCCGGW	1 cut(s)	79
BsaXI	ACNNNNNCTCC	4 cut(s)	188, 218, 741, 771
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 585
Bse1I	ACTGG	2 cut(s)	347, 580
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	2 cut(s)	675, 745
BseLI	CCNNNNNNNGG	2 cut(s)	66, 585
BseMII	CTCAG	4 cut(s)	128, 525, 631, 993
BseNI	ACTGG	2 cut(s)	347, 580
BseXI	GCAGC	7 cut(s)	99, 295, 312, 325, 363, 468, 974
BsgI	GTGCAG	1 cut(s)	928
Bsh1236I	CGCG	1 cut(s)	293
BshFI	GGCC	2 cut(s)	578, 1000
BshNI	GGYRCC	1 cut(s)	1063
BsiHKAI	GWGCWC	2 cut(s)	44, 756
BsiHKCI	CYCGRG	1 cut(s)	501
BsiSI	CCGG	8 cut(s)	47, 60, 80, 396, 677, 747, 1067, 1109
BslI	CCNNNNNNNGG	2 cut(s)	66, 585
BsmAI	GTCTC	5 cut(s)	36, 168, 355, 663, 721
BsnI	GGCC	2 cut(s)	578, 1000
Bso31I	GGTCTC	1 cut(s)	663
BsoBI	CYCGRG	1 cut(s)	501
Bsp119I	TTCGAA	1 cut(s)	572
Bsp1286I	GDGCHC	2 cut(s)	44, 756
Bsp143I	GATC	3 cut(s)	94, 140, 447
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	2 cut(s)	578, 1000
BspCNI	CTCAG	4 cut(s)	129, 526, 630, 994
BspFNI	CGCG	1 cut(s)	293
BspLI	GGNNCC	3 cut(s)	681, 1046, 1065
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	2 cut(s)	102, 442
BspT104I	TTCGAA	1 cut(s)	572
BspT107I	GGYRCC	1 cut(s)	1063
BspTNI	GGTCTC	1 cut(s)	663
BsrI	ACTGG	2 cut(s)	347, 580
BssECI	CCNNGG	2 cut(s)	675, 745
BssMI	GATC	3 cut(s)	94, 140, 447
BssNI	GRCGYC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	858
Bst6I	CTCTTC	3 cut(s)	205, 229, 535
BstACI	GRCGYC	1 cut(s)	57
BstBI	TTCGAA	1 cut(s)	572
BstC8I	GCNNGC	2 cut(s)	44, 152
BstDEI	CTNAG	4 cut(s)	137, 534, 617, 1002
BstFNI	CGCG	1 cut(s)	293
BstHHI	GCGC	3 cut(s)	293, 300, 338
BstKTI	GATC	3 cut(s)	97, 143, 450
BstMAI	GTCTC	5 cut(s)	36, 168, 355, 663, 721
BstMBI	GATC	3 cut(s)	94, 140, 447
BstMWI	GCNNNNNNNGC	1 cut(s)	297
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	4 cut(s)	90, 394, 675, 745
BstSFI	CTRYAG	1 cut(s)	339
BstUI	CGCG	1 cut(s)	293
BstV1I	GCAGC	7 cut(s)	99, 295, 312, 325, 363, 468, 974
BstV2I	GAAGAC	3 cut(s)	396, 531, 1037
BsuI	GTATCC	1 cut(s)	601
BsuRI	GGCC	2 cut(s)	578, 1000
BtsI	GCAGTG	1 cut(s)	257
BtsIMutI	CAGTG	3 cut(s)	257, 625, 1131
Cac8I	GCNNGC	2 cut(s)	44, 152
CfoI	GCGC	3 cut(s)	293, 300, 338
Cfr13I	GGNCC	2 cut(s)	344, 577
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	511
CspCI	CAANNNNNGTGG	2 cut(s)	487, 522
CviAII	CATG	5 cut(s)	22, 109, 130, 235, 523
CviQI	GTAC	1 cut(s)	511
DdeI	CTNAG	4 cut(s)	137, 534, 617, 1002
DpnI	GATC	3 cut(s)	96, 142, 449
DpnII	GATC	3 cut(s)	94, 140, 447
Eam1104I	CTCTTC	3 cut(s)	205, 229, 535
EarI	CTCTTC	3 cut(s)	205, 229, 535
Ecl136II	GAGCTC	2 cut(s)	42, 754
Eco24I	GRGCYC	2 cut(s)	44, 756
Eco31I	GGTCTC	1 cut(s)	663
Eco47I	GGWCC	1 cut(s)	344
Eco53kI	GAGCTC	2 cut(s)	42, 754
Eco57I	CTGAAG	2 cut(s)	1072, 1107
Eco88I	CYCGRG	1 cut(s)	501
EcoICRI	GAGCTC	2 cut(s)	42, 754
EcoRII	CCWGG	1 cut(s)	90
EcoT38I	GRGCYC	2 cut(s)	44, 756
FaeI	CATG	5 cut(s)	25, 112, 133, 238, 526
FalI	AAGNNNNNCTT	2 cut(s)	1063, 1095
FatI	CATG	5 cut(s)	21, 108, 129, 234, 522
FauI	CCCGC	1 cut(s)	255
Fnu4HI	GCNGC	7 cut(s)	113, 284, 301, 339, 377, 482, 988
FriOI	GRGCYC	2 cut(s)	44, 756
Fsp4HI	GCNGC	7 cut(s)	113, 284, 301, 339, 377, 482, 988
FspBI	CTAG	1 cut(s)	552
GlaI	GCGC	3 cut(s)	292, 299, 337
GluI	GCNGC	7 cut(s)	113, 284, 301, 339, 377, 482, 988
HaeIII	GGCC	2 cut(s)	578, 1000
HapII	CCGG	8 cut(s)	47, 60, 80, 396, 677, 747, 1067, 1109
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	3 cut(s)	293, 300, 338
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	5 cut(s)	25, 112, 133, 238, 526
Hin6I	GCGC	3 cut(s)	291, 298, 336
HinP1I	GCGC	3 cut(s)	291, 298, 336
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HinfI	GANTC	4 cut(s)	4, 278, 536, 569
HpaII	CCGG	8 cut(s)	47, 60, 80, 396, 677, 747, 1067, 1109
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	697
Hpy188I	TCNGA	3 cut(s)	138, 322, 535
Hpy188III	TCNNGA	4 cut(s)	260, 427, 441, 635
Hpy8I	GTNNAC	1 cut(s)	697
HpyAV	CCTTC	5 cut(s)	136, 568, 632, 776, 857
HpyCH4III	ACNGT	1 cut(s)	858
HpyCH4V	TGCA	3 cut(s)	150, 341, 909
HpyF10VI	GCNNNNNNNGC	1 cut(s)	297
HpyF3I	CTNAG	4 cut(s)	137, 534, 617, 1002
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	5 cut(s)	25, 112, 133, 238, 526
HspAI	GCGC	3 cut(s)	291, 298, 336
Kzo9I	GATC	3 cut(s)	94, 140, 447
LmnI	GCTCC	3 cut(s)	69, 679, 1050
Lsp1109I	GCAGC	7 cut(s)	99, 295, 312, 325, 363, 468, 974
LweI	GCATC	2 cut(s)	955, 973
MaeI	CTAG	1 cut(s)	552
MaeIII	GTNAC	3 cut(s)	419, 620, 929
MalI	GATC	3 cut(s)	96, 142, 449
MboI	GATC	3 cut(s)	94, 140, 447
MboII	GAAGA	7 cut(s)	192, 216, 396, 522, 531, 805, 1042
MfeI	CAATTG	1 cut(s)	690
MhlI	GDGCHC	2 cut(s)	44, 756
MluCI	AATT	8 cut(s)	208, 323, 592, 612, 690, 703, 871, 937
MlyI	GAGTC	2 cut(s)	272, 545
MnlI	CCTC	6 cut(s)	76, 126, 214, 223, 279, 1020
MroXI	GAANNNNTTC	1 cut(s)	642
MseI	TTAA	3 cut(s)	596, 702, 974
MslI	CAYNNNNRTG	1 cut(s)	651
MspI	CCGG	8 cut(s)	47, 60, 80, 396, 677, 747, 1067, 1109
MspR9I	CCNGG	4 cut(s)	92, 396, 677, 747
MunI	CAATTG	1 cut(s)	690
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	1 cut(s)	297
NciI	CCSGG	3 cut(s)	396, 677, 747
NdeII	GATC	3 cut(s)	94, 140, 447
NlaIII	CATG	5 cut(s)	25, 112, 133, 238, 526
NlaIV	GGNNCC	3 cut(s)	681, 1046, 1065
NmuCI	GTSAC	1 cut(s)	620
NspV	TTCGAA	1 cut(s)	572
PaeR7I	CTCGAG	1 cut(s)	501
PdmI	GAANNNNTTC	1 cut(s)	642
PfeI	GAWTC	2 cut(s)	4, 569
PflFI	GACNNNGTC	1 cut(s)	433
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	7 cut(s)	114, 285, 302, 340, 378, 483, 989
PleI	GAGTC	2 cut(s)	272, 544
PpsI	GAGTC	2 cut(s)	272, 544
Psp124BI	GAGCTC	2 cut(s)	44, 756
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	3 cut(s)	681, 1046, 1065
PspPI	GGNCC	2 cut(s)	344, 577
PspXI	VCTCGAGB	1 cut(s)	501
PstI	CTGCAG	1 cut(s)	343
PsyI	GACNNNGTC	1 cut(s)	433
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
RseI	CAYNNNNRTG	1 cut(s)	651
SacI	GAGCTC	2 cut(s)	44, 756
SaqAI	TTAA	3 cut(s)	596, 702, 974
SatI	GCNGC	7 cut(s)	113, 284, 301, 339, 377, 482, 988
Sau3AI	GATC	3 cut(s)	94, 140, 447
Sau96I	GGNCC	2 cut(s)	344, 577
SchI	GAGTC	2 cut(s)	272, 545
ScrFI	CCNGG	4 cut(s)	92, 396, 677, 747
SduI	GDGCHC	2 cut(s)	44, 756
SfaNI	GCATC	2 cut(s)	955, 973
SfcI	CTRYAG	1 cut(s)	339
Sfr274I	CTCGAG	1 cut(s)	501
SfuI	TTCGAA	1 cut(s)	572
SinI	GGWCC	1 cut(s)	344
SlaI	CTCGAG	1 cut(s)	501
SmiMI	CAYNNNNRTG	1 cut(s)	651
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
Sse9I	AATT	8 cut(s)	208, 323, 592, 612, 690, 703, 871, 937
SsiI	CCGC	1 cut(s)	248
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	1 cut(s)	552
SstI	GAGCTC	2 cut(s)	44, 756
StyD4I	CCNGG	4 cut(s)	90, 394, 675, 745
TaaI	ACNGT	1 cut(s)	858
TaqI	TCGA	6 cut(s)	440, 502, 572, 671, 766, 1025
TasI	AATT	8 cut(s)	208, 323, 592, 612, 690, 703, 871, 937
TfiI	GAWTC	2 cut(s)	4, 569
Tru1I	TTAA	3 cut(s)	596, 702, 974
Tru9I	TTAA	3 cut(s)	596, 702, 974
TscAI	CASTG	3 cut(s)	257, 625, 1131
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	7 cut(s)	112, 283, 300, 338, 376, 481, 987
Tsp45I	GTSAC	1 cut(s)	620
TspDTI	ATGAA	8 cut(s)	17, 118, 175, 461, 511, 635, 795, 857
TspRI	CASTG	3 cut(s)	257, 625, 1131
Tth111I	GACNNNGTC	1 cut(s)	433
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	592
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1057
XhoI	CTCGAG	1 cut(s)	501
XmnI	GAANNNNTTC	1 cut(s)	642
XspI	CTAG	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.