Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012387

Physical Location & Seq

Genomic Coordinates Forward (+)

36495420 .. 36496932

Gene Structure 1513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G423100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAGCCCACCGGAGATGGACGCCGGATTATGGAGCAAGCTACCACAGGAACTCCTTGAGCGTATTCTCTCTTTTCTACCTCTCAAAAACTTCATGAATCTGAGATCGACTTGTAAGCACTTCAAGTCTCTGTTATTCTCTCCCTCTTTCATCTCCAAGCACTCCTCTTCTTCATCCTTCTCTTCTTTCCTCTTGCTTTCTCACCCTCAGTGTTACAACCACTTCGCTTTCTATGACTCTGCTCTTGGTGCTTGGCGCAACTTTGCTCTGTCTCTCTCTGCCTTGCTGCCCTGCGCTGCAGGGCAAGCCTCTCTGCTCTCTACCTCCAATGGGTTGCTCTGTTTCTCCCTCTCCAATTCGTTTCTTGTCTTCAATCTTTTGACCAAGTCTTCAAGAGTGATCGGATTCCCTGCTTATCCTTTTGCTTTTGAGCTGTTTTCTTTGGTTTCCACGCCTGTTGGGTACAGTCTTTTCATGGTCTCTTCTGGGTCTCGTACCAAAAACACTTTTGTTTATGATTCAAAGGTTCAATTTTGGCGAAAATTCAATGGTTTCAAGCCAATTCTCAGTGACAATTATCATCATCAAGCTGTTTACTATAAAGGGTCATTGTATTTTGTGACCCCGGAGCCATTCTCTGTAGCGTGCTTTGTTTTGGAAAGCGGTAAGTGGGAGAGACCCAACACTGAGTTGCCTAGAGAGCTCATGTTTGTTCGGCTAGTCAGCGATGGAGGAGACGGAAAGCTGTATTTGATTGGTGGAGTTGGCAGGAATGGGATTTCAAGGAGCATGAAACTCTGGGAATTGGGTGAAGGAATGAATTGGGTTGAGGTGGAGAGCTTGCCAGAAATGATGTGCAGAAAATTGATGTCTGTTTGTTTCCATAACTACGAGCATCTCTATTGCTTTTGGCATCGGGGTTTCATCTGTGTTTGCTGCTACACATGGCCGGAGGTTCTGTATTTCAAGGTTTCAAGGAGGACTTGGCATTGGCTGCCCAAATGCCCTTCACTGCCTGATAAATGGAGCTGTGGCTTCAGGTGGTTTTCCTTTGTGCCAGAGTTATATGCTTCGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

360

Amino Acids

41.23

Weight (kDa)

8.96

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43190
fragaria_vesca	FvH4_2g33130
malus_domestica	MD08G1084200.v1.1 MD15G1070300.v1.1
prunus_persica	Prupe.1G423100_v2.0.a1
pyrus_communis	pycom08g06980
rosa_chinensis	RchiOBHm_Chr6g0309541
rosa_laevigata	RLG00000010555
rosa_multiflora	Rmu_co8522085.1_g000003 Rmu_sc0007283.1_g000011 Rmu_sc0024715.1_g000004 Rmu_sc0030536.1_g000005
rosa_roxburghii	Rroxscaffold_7G00159320
rosa_rugosa	Rorug06G0372700
rosa_samantha	Rh6AG486100 Rh6BG495500 Rh6CG500500 Rh6DG486400
rosa_wichuraiana	Rw6G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	663
AcoI	YGGCCR	1 cut(s)	947
AcsI	RAATTY	1 cut(s)	542
AcuI	CTGAAG	1 cut(s)	1021
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	2 cut(s)	464, 496
AfiI	CCNNNNNNNGG	2 cut(s)	30, 330
AluBI	AGCT	7 cut(s)	40, 433, 590, 703, 745, 840, 1029
AluI	AGCT	7 cut(s)	40, 433, 590, 703, 745, 840, 1029
Alw21I	GWGCWC	1 cut(s)	705
Alw26I	GTCTC	6 cut(s)	132, 276, 484, 495, 670, 729
AoxI	GGCC	1 cut(s)	947
ApeKI	GCWGC	4 cut(s)	286, 296, 936, 994
ApoI	RAATTY	1 cut(s)	542
AspLEI	GCGC	2 cut(s)	258, 296
AsuC2I	CCSGG	1 cut(s)	626
AsuHPI	GGTGA	2 cut(s)	194, 821
BanII	GRGCYC	2 cut(s)	8, 705
BbsI	GAAGAC	2 cut(s)	361, 381
Bbv12I	GWGCWC	1 cut(s)	705
BbvI	GCAGC	4 cut(s)	273, 283, 923, 981
BccI	CCATC	2 cut(s)	10, 722
BcnI	CCSGG	1 cut(s)	626
BcoDI	GTCTC	6 cut(s)	132, 276, 484, 495, 670, 729
BfaI	CTAG	2 cut(s)	696, 719
BfmI	CTRYAG	2 cut(s)	297, 639
BisI	GCNGC	4 cut(s)	287, 297, 937, 995
BlsI	GCNGC	4 cut(s)	288, 298, 938, 996
Bme1390I	CCNGG	1 cut(s)	626
BmiI	GGNNCC	1 cut(s)	630
BmrFI	CCNGG	1 cut(s)	626
BmsI	GCATC	2 cut(s)	904, 922
BpiI	GAAGAC	2 cut(s)	361, 381
BplI	GAGNNNNNCTC	2 cut(s)	620, 652
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	626
BsaHI	GRCGYC	1 cut(s)	21
BsaI	GGTCTC	3 cut(s)	484, 495, 670
BsaJI	CCNNGG	1 cut(s)	624
BsaWI	WCCGGW	1 cut(s)	10
BsaXI	ACNNNNNCTCC	4 cut(s)	36, 66, 944, 974
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 330
BseDI	CCNNGG	1 cut(s)	624
BseGI	GGATG	1 cut(s)	173
BseLI	CCNNNNNNNGG	2 cut(s)	30, 330
BseMII	CTCAG	4 cut(s)	92, 221, 580, 678
BseRI	GAGGAG	2 cut(s)	154, 747
BseXI	GCAGC	4 cut(s)	273, 283, 923, 981
BsgI	GTGCAG	1 cut(s)	877
BshFI	GGCC	1 cut(s)	949
BsiHKAI	GWGCWC	1 cut(s)	705
BsiSI	CCGG	4 cut(s)	11, 24, 626, 950
BslI	CCNNNNNNNGG	2 cut(s)	30, 330
BsmAI	GTCTC	6 cut(s)	132, 276, 484, 495, 670, 729
BsmBI	CGTCTC	1 cut(s)	729
BsnI	GGCC	1 cut(s)	949
Bso31I	GGTCTC	3 cut(s)	484, 495, 670
Bsp1286I	GDGCHC	2 cut(s)	8, 705
Bsp143I	GATC	2 cut(s)	104, 399
BspACI	CCGC	1 cut(s)	663
BspANI	GGCC	1 cut(s)	949
BspCNI	CTCAG	4 cut(s)	93, 220, 579, 679
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	630
BspMAI	CTGCAG	1 cut(s)	301
BspTNI	GGTCTC	3 cut(s)	484, 495, 670
BssECI	CCNNGG	1 cut(s)	624
BssMI	GATC	2 cut(s)	104, 399
BssNI	GRCGYC	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	467
Bst6I	CTCTTC	3 cut(s)	172, 187, 487
BstACI	GRCGYC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	994
BstC8I	GCNNGC	4 cut(s)	38, 306, 646, 842
BstDEI	CTNAG	4 cut(s)	101, 207, 566, 687
BstF5I	GGATG	1 cut(s)	173
BstHHI	GCGC	2 cut(s)	258, 296
BstKTI	GATC	2 cut(s)	107, 402
BstMAI	GTCTC	6 cut(s)	132, 276, 484, 495, 670, 729
BstMBI	GATC	2 cut(s)	104, 399
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 305, 700, 994
BstSCI	CCNGG	1 cut(s)	624
BstSFI	CTRYAG	2 cut(s)	297, 639
BstV1I	GCAGC	4 cut(s)	273, 283, 923, 981
BstV2I	GAAGAC	2 cut(s)	361, 381
BsuRI	GGCC	1 cut(s)	949
BtgZI	GCGATG	1 cut(s)	741
BtsCI	GGATG	1 cut(s)	173
BtsI	GCAGTG	1 cut(s)	1010
BtsIMutI	CAGTG	4 cut(s)	215, 574, 684, 1010
Cac8I	GCNNGC	4 cut(s)	38, 306, 646, 842
CciI	TCATGA	1 cut(s)	93
CfoI	GCGC	2 cut(s)	258, 296
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	463, 495
CspCI	CAANNNNNGTGG	2 cut(s)	439, 474
CviAII	CATG	5 cut(s)	94, 475, 706, 790, 945
CviQI	GTAC	2 cut(s)	463, 495
DdeI	CTNAG	4 cut(s)	101, 207, 566, 687
DpnI	GATC	2 cut(s)	106, 401
DpnII	GATC	2 cut(s)	104, 399
EaeI	YGGCCR	1 cut(s)	947
Eam1104I	CTCTTC	3 cut(s)	172, 187, 487
EarI	CTCTTC	3 cut(s)	172, 187, 487
Ecl136II	GAGCTC	1 cut(s)	703
Eco24I	GRGCYC	2 cut(s)	8, 705
Eco31I	GGTCTC	3 cut(s)	484, 495, 670
Eco53kI	GAGCTC	1 cut(s)	703
Eco57I	CTGAAG	1 cut(s)	1021
EcoICRI	GAGCTC	1 cut(s)	703
EcoT38I	GRGCYC	2 cut(s)	8, 705
Esp3I	CGTCTC	1 cut(s)	729
FaeI	CATG	5 cut(s)	97, 478, 709, 793, 948
FalI	AAGNNNNNCTT	2 cut(s)	967, 999
FatI	CATG	5 cut(s)	93, 474, 705, 789, 944
Fnu4HI	GCNGC	4 cut(s)	287, 297, 937, 995
FokI	GGATG	1 cut(s)	160
FriOI	GRGCYC	2 cut(s)	8, 705
Fsp4HI	GCNGC	4 cut(s)	287, 297, 937, 995
FspBI	CTAG	2 cut(s)	696, 719
GlaI	GCGC	2 cut(s)	257, 295
GluI	GCNGC	4 cut(s)	287, 297, 937, 995
HaeIII	GGCC	1 cut(s)	949
HapII	CCGG	4 cut(s)	11, 24, 626, 950
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	2 cut(s)	258, 296
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	5 cut(s)	97, 478, 709, 793, 948
Hin6I	GCGC	2 cut(s)	256, 294
HinP1I	GCGC	2 cut(s)	256, 294
HinfI	GANTC	4 cut(s)	97, 236, 405, 518
HpaII	CCGG	4 cut(s)	11, 24, 626, 950
HphI	GGTGA	2 cut(s)	194, 821
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	3 cut(s)	102, 404, 1079
Hpy188III	TCNNGA	2 cut(s)	94, 393
Hpy8I	GTNNAC	1 cut(s)	595
HpyAV	CCTTC	3 cut(s)	187, 806, 1017
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4V	TGCA	2 cut(s)	299, 858
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 305, 700, 994
HpyF3I	CTNAG	4 cut(s)	101, 207, 566, 687
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	5 cut(s)	97, 478, 709, 793, 948
HspAI	GCGC	2 cut(s)	256, 294
Kzo9I	GATC	2 cut(s)	104, 399
LmnI	GCTCC	4 cut(s)	33, 628, 786, 1026
Lsp1109I	GCAGC	4 cut(s)	273, 283, 923, 981
LweI	GCATC	2 cut(s)	904, 922
MaeI	CTAG	2 cut(s)	696, 719
MaeIII	GTNAC	3 cut(s)	212, 569, 619
MalI	GATC	2 cut(s)	106, 401
MboI	GATC	2 cut(s)	104, 399
MboII	GAAGA	6 cut(s)	159, 162, 174, 361, 381, 474
MhlI	GDGCHC	2 cut(s)	8, 705
MluCI	AATT	8 cut(s)	355, 530, 542, 561, 574, 803, 820, 863
MlyI	GAGTC	1 cut(s)	230
MspI	CCGG	4 cut(s)	11, 24, 626, 950
MspR9I	CCNGG	1 cut(s)	626
MwoI	GCNNNNNNNGC	4 cut(s)	248, 305, 700, 994
NciI	CCSGG	1 cut(s)	626
NdeII	GATC	2 cut(s)	104, 399
NlaIII	CATG	5 cut(s)	97, 478, 709, 793, 948
NlaIV	GGNNCC	1 cut(s)	630
NmuCI	GTSAC	2 cut(s)	569, 619
PagI	TCATGA	1 cut(s)	93
PfeI	GAWTC	3 cut(s)	97, 405, 518
PflFI	GACNNNGTC	1 cut(s)	385
PkrI	GCNGC	4 cut(s)	288, 298, 938, 996
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
Psp124BI	GAGCTC	1 cut(s)	705
PspN4I	GGNNCC	1 cut(s)	630
PstI	CTGCAG	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	385
RsaI	GTAC	2 cut(s)	464, 496
RsaNI	GTAC	2 cut(s)	463, 495
SacI	GAGCTC	1 cut(s)	705
SatI	GCNGC	4 cut(s)	287, 297, 937, 995
Sau3AI	GATC	2 cut(s)	104, 399
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	626
SduI	GDGCHC	2 cut(s)	8, 705
SfaNI	GCATC	2 cut(s)	904, 922
SfcI	CTRYAG	2 cut(s)	297, 639
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	8 cut(s)	355, 530, 542, 561, 574, 803, 820, 863
SsiI	CCGC	1 cut(s)	663
SspMI	CTAG	2 cut(s)	696, 719
SstI	GAGCTC	1 cut(s)	705
StyD4I	CCNGG	1 cut(s)	624
TaaI	ACNGT	1 cut(s)	467
TaqI	TCGA	1 cut(s)	107
TaqII	GACCGA	1 cut(s)	1063
TasI	AATT	8 cut(s)	355, 530, 542, 561, 574, 803, 820, 863
TfiI	GAWTC	3 cut(s)	97, 405, 518
TscAI	CASTG	4 cut(s)	215, 574, 691, 1017
TseFI	GTSAC	2 cut(s)	569, 619
TseI	GCWGC	4 cut(s)	286, 296, 936, 994
Tsp45I	GTSAC	2 cut(s)	569, 619
TspDTI	ATGAA	8 cut(s)	82, 110, 139, 162, 463, 806, 833, 913
TspGWI	ACGGA	1 cut(s)	753
TspRI	CASTG	4 cut(s)	215, 574, 691, 1017
Tth111I	GACNNNGTC	1 cut(s)	385
XapI	RAATTY	1 cut(s)	542
XspI	CTAG	2 cut(s)	696, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.