MD15G1070300.v1.1

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
4798333 .. 4799472
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1070300.v1.1.491

Sequence Viewer

Length: 1140 bp
ATGAAAGACCACTCTCCGCCAAATCACTACGGCCAAACCACCGCCGTCCCCACCTCTCCTTCCACCCCACCGAAGATGGACGCCAGGATATGGAGCAAGCTGCCGGAGGAGCTCCTCGACCTTGTCCTTTCTTTCCTTCCTCTCAAAAACTTCCTGATTCTCAGATCGACCTGCAAGCGCTTCAAGTCGCTGTTATTCTCTCCCTCCTTCGTCTTCAAGCACTCCTCCGCCTTCCTCCTCCTCTCCCACCCTCAGTGCTTCCGCCACTTCCCTCTCTACGACTCCGACACCACCACCTGGCGCAAGCTACCTCTCTCTCTCTCCGCTCCGCTACCCTGCGCTGCGGGCGCAGCAGCACAAGCCTCCCTCCTCTGTGCCTCCAATGGGTTGCTCTGTTTCTCTCTCCCCAATTCGTTTCTCGTCTTCAATATTCTGACCAAGTCCTCGAGAGTGATCAAATTTCCAGATTGCCCTTTTGGATTCGAGCTTTTCTCTTTGATATCCACCCCTGCTGGGTATAATCTTTTCATGGCCTCTTCTAGGTCGTCGTCCAAAAGCACTTTTGTCTACCATTCAAAGGCGCGATCGTGGCAAAAGTTTGACTTTACCGAGACGATTTTAAGTGACAATTGTCACCAGAAGGGAGTTTACTTCAAAGGGTGTTTGTATTTCGTGACGCCGGAACCGTTTTCGATTGTCTGCTTCGAATTCGAGAGCGGGAAGTGGGAAAGACCGATTCCGGAGCTTCCTACAGAGCTCGTGTTTGCTCGGCTTGTCAGCGGAGGAGGAGAGAAGAAGCTGTATCTGATTGGTGGGGTCGGCAGGAATGGGATTGCCAGGAGCTTGCAAGTGTGGGAATTGGAATTTGGCGGTGGGATGAAGTGGGTGGAGGTGGAAAGCTTGCCGGACAGGATGTGCAAGAAACTGATGTCGGTTTGCTTCCATAACTACGAGCATCTGTACTGCTTTTGGCATCAGGGTTTGATCTGCGTCTGCTGCTACAATTGGCCGGAGATTTTGTACTTCAAGATCTCGAGGAGGACGTGGCATTGGATCCCCAAATGCCCGTCTCTGCCGGATAAATCCAGCTGCGGATTCCGGTGGTTTTCATTTGTACCGAACTTCCATTCATCCGCCTGA

Protein Analysis

380

Amino Acids

43.17

Weight (kDa)

9.02

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 31 - 72 1.3e-08 F-box domain
F-box-like PF12937 31 - 70 6.1e-07 F-box-like
Beta-prop_KIB1-4 PF03478 112 - 305 3e-09 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012387)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 179
AccB7I CCANNNNNTGG 2 cut(s) 90, 297
AccBSI CCGCTC 2 cut(s) 326, 717
AccI GTMKAC 1 cut(s) 567
AccII CGCG 1 cut(s) 583
AccIII TCCGGA 1 cut(s) 739
AclWI GGATC 2 cut(s) 1048, 1061
AcoI YGGCCR 2 cut(s) 31, 1007
AcsI RAATTY 3 cut(s) 458, 707, 863
AcyI GRCGYC 2 cut(s) 81, 677
AfaI GTAC 3 cut(s) 962, 1022, 1116
AfeI AGCGCT 1 cut(s) 179
AfiI CCNNNNNNNGG 6 cut(s) 90, 297, 384, 513, 540, 577
AgsI TTSAA 6 cut(s) 184, 217, 427, 576, 655, 1027
AjiI CACGTC 1 cut(s) 1044
AjnI CCWGG 3 cut(s) 83, 296, 836
AjuI GAANNNNNNNTTGG 2 cut(s) 849, 881
Alw21I GWGCWC 2 cut(s) 114, 759
Alw26I GTCTC 2 cut(s) 605, 1074
AlwI GGATC 2 cut(s) 1048, 1061
Ama87I CYCGRG 2 cut(s) 445, 1033
Aor13HI TCCGGA 1 cut(s) 739
Aor51HI AGCGCT 1 cut(s) 179
AoxI GGCC 3 cut(s) 31, 531, 1007
ApeKI GCWGC 6 cut(s) 100, 341, 350, 353, 996, 1089
ApoI RAATTY 3 cut(s) 458, 707, 863
AspLEI GCGC 5 cut(s) 180, 303, 341, 350, 583
AsuHPI GGTGA 1 cut(s) 626
AsuII TTCGAA 1 cut(s) 705
AvaI CYCGRG 2 cut(s) 445, 1033
BamHI GGATCC 1 cut(s) 1053
BanII GRGCYC 2 cut(s) 114, 759
BarI GAAGNNNNNNTAC 2 cut(s) 632, 664
BauI CACGAG 1 cut(s) 758
BbsI GAAGAC 2 cut(s) 205, 415
Bbv12I GWGCWC 2 cut(s) 114, 759
BbvI GCAGC 6 cut(s) 87, 328, 362, 365, 983, 1076
BccI CCATC 1 cut(s) 70
BceAI ACGGC 2 cut(s) 29, 46
BciT130I CCWGG 3 cut(s) 85, 298, 838
BclI TGATCA 1 cut(s) 453
BcoDI GTCTC 2 cut(s) 605, 1074
BfaI CTAG 1 cut(s) 540
BfmI CTRYAG 1 cut(s) 750
BfoI RGCGCY 1 cut(s) 181
BfuAI ACCTGC 1 cut(s) 179
BglII AGATCT 1 cut(s) 1029
BisI GCNGC 6 cut(s) 101, 342, 351, 354, 997, 1090
BlsI GCNGC 6 cut(s) 102, 343, 352, 355, 998, 1091
Bme1390I CCNGG 3 cut(s) 85, 298, 838
BmeT110I CYCGRG 2 cut(s) 445, 1033
BmgBI CACGTC 1 cut(s) 1044
BmiI GGNNCC 2 cut(s) 684, 1055
BmrFI CCNGG 3 cut(s) 85, 298, 838
BmsI GCATC 2 cut(s) 964, 982
BoxI GACNNNNGTC 1 cut(s) 630
BpiI GAAGAC 2 cut(s) 205, 415
BplI GAGNNNNNCTC 2 cut(s) 476, 508
Bpu14I TTCGAA 1 cut(s) 705
BsaHI GRCGYC 2 cut(s) 81, 677
BsaWI WCCGGW 2 cut(s) 739, 1098
BsaXI ACNNNNNCTCC 2 cut(s) 1004, 1034
Bsc4I CCNNNNNNNGG 6 cut(s) 90, 297, 384, 513, 540, 577
BseAI TCCGGA 1 cut(s) 739
BseBI CCWGG 3 cut(s) 85, 298, 838
BseGI GGATG 3 cut(s) 882, 918, 1130
BseLI CCNNNNNNNGG 6 cut(s) 90, 297, 384, 513, 540, 577
BseMII CTCAG 2 cut(s) 175, 266
BseRI GAGGAG 9 cut(s) 104, 122, 214, 227, 230, 359, 798, 801, 1051
BseXI GCAGC 6 cut(s) 87, 328, 362, 365, 983, 1076
BseYI CCCAGC 1 cut(s) 512
Bsh1236I CGCG 1 cut(s) 583
Bsh1285I CGRYCG 1 cut(s) 587
BshFI GGCC 3 cut(s) 33, 533, 1009
BsiEI CGRYCG 1 cut(s) 587
BsiHKAI GWGCWC 2 cut(s) 114, 759
BsiHKCI CYCGRG 2 cut(s) 445, 1033
BsiSI CCGG 7 cut(s) 104, 680, 740, 905, 1010, 1076, 1099
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 6 cut(s) 90, 297, 384, 513, 540, 577
BsmAI GTCTC 2 cut(s) 605, 1074
BsmBI CGTCTC 2 cut(s) 605, 1074
BsmFI GGGAC 1 cut(s) 32
BsnI GGCC 3 cut(s) 33, 533, 1009
BsoBI CYCGRG 2 cut(s) 445, 1033
Bsp119I TTCGAA 1 cut(s) 705
Bsp1286I GDGCHC 2 cut(s) 114, 759
Bsp13I TCCGGA 1 cut(s) 739
Bsp143I GATC 6 cut(s) 164, 453, 584, 984, 1029, 1053
BspANI GGCC 3 cut(s) 33, 533, 1009
BspCNI CTCAG 2 cut(s) 174, 265
BspEI TCCGGA 1 cut(s) 739
BspFNI CGCG 1 cut(s) 583
BspLI GGNNCC 2 cut(s) 684, 1055
BspMI ACCTGC 1 cut(s) 179
BspPI GGATC 2 cut(s) 1048, 1061
BspT104I TTCGAA 1 cut(s) 705
BsrBI CCGCTC 2 cut(s) 326, 717
BssMI GATC 6 cut(s) 164, 453, 584, 984, 1029, 1053
BssNI GRCGYC 2 cut(s) 81, 677
BssSI CACGAG 1 cut(s) 758
Bst2BI CACGAG 1 cut(s) 758
Bst2UI CCWGG 3 cut(s) 85, 298, 838
Bst4CI ACNGT 1 cut(s) 687
Bst6I CTCTTC 1 cut(s) 541
BstACI GRCGYC 2 cut(s) 81, 677
BstBI TTCGAA 1 cut(s) 705
BstC8I GCNNGC 6 cut(s) 98, 176, 305, 346, 845, 902
BstDEI CTNAG 2 cut(s) 161, 252
BstENI CCTNNNNNAGG 1 cut(s) 538
BstF5I GGATG 3 cut(s) 882, 918, 1130
BstFNI CGCG 1 cut(s) 583
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 5 cut(s) 180, 303, 341, 350, 583
BstKTI GATC 6 cut(s) 167, 456, 587, 987, 1032, 1056
BstMAI GTCTC 2 cut(s) 605, 1074
BstMBI GATC 6 cut(s) 164, 453, 584, 984, 1029, 1053
BstMCI CGRYCG 1 cut(s) 587
BstMWI GCNNNNNNNGC 7 cut(s) 109, 345, 347, 350, 359, 589, 996
BstNI CCWGG 3 cut(s) 85, 298, 838
BstPAI GACNNNNGTC 1 cut(s) 630
BstSCI CCNGG 3 cut(s) 83, 296, 836
BstSFI CTRYAG 1 cut(s) 750
BstUI CGCG 1 cut(s) 583
BstV1I GCAGC 6 cut(s) 87, 328, 362, 365, 983, 1076
BstV2I GAAGAC 2 cut(s) 205, 415
BstX2I RGATCY 2 cut(s) 1029, 1053
BstYI RGATCY 2 cut(s) 1029, 1053
BsuRI GGCC 3 cut(s) 33, 533, 1009
BtrI CACGTC 1 cut(s) 1044
BtsCI GGATG 3 cut(s) 882, 918, 1130
BtsIMutI CAGTG 1 cut(s) 260
BveI ACCTGC 1 cut(s) 179
Cac8I GCNNGC 6 cut(s) 98, 176, 305, 346, 845, 902
CfoI GCGC 5 cut(s) 180, 303, 341, 350, 583
CseI GACGC 3 cut(s) 89, 685, 979
Csp6I GTAC 3 cut(s) 961, 1021, 1115
CviAII CATG 1 cut(s) 529
CviQI GTAC 3 cut(s) 961, 1021, 1115
DdeI CTNAG 2 cut(s) 161, 252
DpnI GATC 6 cut(s) 166, 455, 586, 986, 1031, 1055
DpnII GATC 6 cut(s) 164, 453, 584, 984, 1029, 1053
EaeI YGGCCR 2 cut(s) 31, 1007
Eam1104I CTCTTC 1 cut(s) 541
EarI CTCTTC 1 cut(s) 541
EciI GGCGGA 4 cut(s) 6, 217, 251, 1123
Ecl136II GAGCTC 2 cut(s) 112, 757
Eco24I GRGCYC 2 cut(s) 114, 759
Eco32I GATATC 1 cut(s) 501
Eco47III AGCGCT 1 cut(s) 179
Eco53kI GAGCTC 2 cut(s) 112, 757
Eco88I CYCGRG 2 cut(s) 445, 1033
EcoICRI GAGCTC 2 cut(s) 112, 757
EcoNI CCTNNNNNAGG 1 cut(s) 538
EcoRI GAATTC 1 cut(s) 707
EcoRII CCWGG 3 cut(s) 83, 296, 836
EcoRV GATATC 1 cut(s) 501
EcoT38I GRGCYC 2 cut(s) 114, 759
Esp3I CGTCTC 2 cut(s) 605, 1074
FaeI CATG 1 cut(s) 532
FaiI YATR 4 cut(s) 91, 519, 530, 945
FalI AAGNNNNNCTT 2 cut(s) 587, 619
FaqI GGGAC 1 cut(s) 32
FatI CATG 1 cut(s) 528
FauI CCCGC 2 cut(s) 337, 710
FbaI TGATCA 1 cut(s) 453
FblI GTMKAC 1 cut(s) 567
Fnu4HI GCNGC 6 cut(s) 101, 342, 351, 354, 997, 1090
FokI GGATG 3 cut(s) 889, 925, 1117
FriOI GRGCYC 2 cut(s) 114, 759
Fsp4HI GCNGC 6 cut(s) 101, 342, 351, 354, 997, 1090
FspBI CTAG 1 cut(s) 540
GlaI GCGC 5 cut(s) 179, 302, 340, 349, 582
GluI GCNGC 6 cut(s) 101, 342, 351, 354, 997, 1090
GsaI CCCAGC 1 cut(s) 516
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 3 cut(s) 33, 533, 1009
HapII CCGG 7 cut(s) 104, 680, 740, 905, 1010, 1076, 1099
HgaI GACGC 3 cut(s) 89, 685, 979
HhaI GCGC 5 cut(s) 180, 303, 341, 350, 583
Hin1I GRCGYC 2 cut(s) 81, 677
Hin1II CATG 1 cut(s) 532
Hin6I GCGC 5 cut(s) 178, 301, 339, 348, 581
HinP1I GCGC 5 cut(s) 178, 301, 339, 348, 581
HindIII AAGCTT 1 cut(s) 898
HinfI GANTC 5 cut(s) 157, 281, 480, 736, 1095
HpaII CCGG 7 cut(s) 104, 680, 740, 905, 1010, 1076, 1099
HphI GGTGA 1 cut(s) 626
Hpy166II GTNNAC 2 cut(s) 568, 649
Hpy188I TCNGA 4 cut(s) 164, 286, 435, 807
Hpy188III TCNNGA 8 cut(s) 154, 447, 464, 673, 712, 740, 1027, 1033
Hpy8I GTNNAC 2 cut(s) 568, 649
Hpy99I CGWCG 1 cut(s) 550
HpyAV CCTTC 5 cut(s) 69, 146, 217, 241, 634
HpyCH4III ACNGT 1 cut(s) 687
HpyCH4IV ACGT 1 cut(s) 1043
HpyCH4V TGCA 3 cut(s) 174, 847, 918
HpyF10VI GCNNNNNNNGC 7 cut(s) 109, 345, 347, 350, 359, 589, 996
HpyF3I CTNAG 2 cut(s) 161, 252
HpySE526I ACGT 1 cut(s) 1043
Hsp92I GRCGYC 2 cut(s) 81, 677
Hsp92II CATG 1 cut(s) 532
HspAI GCGC 5 cut(s) 178, 301, 339, 348, 581
Kpn2I TCCGGA 1 cut(s) 739
Ksp22I TGATCA 1 cut(s) 453
Kzo9I GATC 6 cut(s) 164, 453, 584, 984, 1029, 1053
LmnI GCTCC 6 cut(s) 93, 109, 117, 331, 742, 840
Lsp1109I GCAGC 6 cut(s) 87, 328, 362, 365, 983, 1076
LweI GCATC 2 cut(s) 964, 982
MaeI CTAG 1 cut(s) 540
MaeII ACGT 1 cut(s) 1043
MaeIII GTNAC 3 cut(s) 623, 632, 673
MalI GATC 6 cut(s) 166, 455, 586, 986, 1031, 1055
MbiI CCGCTC 2 cut(s) 326, 717
MboI GATC 6 cut(s) 164, 453, 584, 984, 1029, 1053
MboII GAAGA 5 cut(s) 85, 205, 415, 528, 805
MfeI CAATTG 2 cut(s) 628, 1003
MflI RGATCY 2 cut(s) 1029, 1053
MhlI GDGCHC 2 cut(s) 114, 759
MluCI AATT 7 cut(s) 409, 458, 628, 707, 857, 863, 1003
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 309
MroI TCCGGA 1 cut(s) 739
MseI TTAA 1 cut(s) 620
MspA1I CMGCKG 2 cut(s) 780, 1089
MspI CCGG 7 cut(s) 104, 680, 740, 905, 1010, 1076, 1099
MspR9I CCNGG 3 cut(s) 85, 298, 838
MunI CAATTG 2 cut(s) 628, 1003
MvaI CCWGG 3 cut(s) 85, 298, 838
MvnI CGCG 1 cut(s) 583
MwoI GCNNNNNNNGC 7 cut(s) 109, 345, 347, 350, 359, 589, 996
NdeII GATC 6 cut(s) 164, 453, 584, 984, 1029, 1053
NlaIII CATG 1 cut(s) 532
NlaIV GGNNCC 2 cut(s) 684, 1055
NmeAIII GCCGAG 1 cut(s) 748
NmuCI GTSAC 3 cut(s) 623, 632, 673
NspV TTCGAA 1 cut(s) 705
PaeR7I CTCGAG 2 cut(s) 445, 1033
PcsI WCGNNNNNNNCGW 2 cut(s) 683, 1040
PfeI GAWTC 4 cut(s) 157, 480, 736, 1095
PflFI GACNNNGTC 2 cut(s) 122, 439
PflMI CCANNNNNTGG 2 cut(s) 90, 297
PkrI GCNGC 6 cut(s) 102, 343, 352, 355, 998, 1091
Ple19I CGATCG 1 cut(s) 587
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
PshAI GACNNNNGTC 1 cut(s) 630
Psp124BI GAGCTC 2 cut(s) 114, 759
Psp6I CCWGG 3 cut(s) 83, 296, 836
PspFI CCCAGC 1 cut(s) 512
PspGI CCWGG 3 cut(s) 83, 296, 836
PspN4I GGNNCC 2 cut(s) 684, 1055
PsuI RGATCY 2 cut(s) 1029, 1053
PsyI GACNNNGTC 2 cut(s) 122, 439
PvuI CGATCG 1 cut(s) 587
PvuII CAGCTG 1 cut(s) 1089
RsaI GTAC 3 cut(s) 962, 1022, 1116
RsaNI GTAC 3 cut(s) 961, 1021, 1115
SacI GAGCTC 2 cut(s) 114, 759
SaqAI TTAA 1 cut(s) 620
SatI GCNGC 6 cut(s) 101, 342, 351, 354, 997, 1090
Sau3AI GATC 6 cut(s) 164, 453, 584, 984, 1029, 1053
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 3 cut(s) 85, 298, 838
SduI GDGCHC 2 cut(s) 114, 759
SfaNI GCATC 2 cut(s) 964, 982
SfcI CTRYAG 1 cut(s) 750
Sfr274I CTCGAG 2 cut(s) 445, 1033
SfuI TTCGAA 1 cut(s) 705
SlaI CTCGAG 2 cut(s) 445, 1033
SmlI CTYRAG 2 cut(s) 445, 1033
SmoI CTYRAG 2 cut(s) 445, 1033
Sse9I AATT 7 cut(s) 409, 458, 628, 707, 857, 863, 1003
SspI AATATT 1 cut(s) 430
SspMI CTAG 1 cut(s) 540
SstI GAGCTC 2 cut(s) 114, 759
StyD4I CCNGG 3 cut(s) 83, 296, 836
TaaI ACNGT 1 cut(s) 687
TaiI ACGT 1 cut(s) 1046
TaqI TCGA 8 cut(s) 117, 167, 446, 483, 692, 705, 711, 1034
TaqII GACCGA 1 cut(s) 748
TasI AATT 7 cut(s) 409, 458, 628, 707, 857, 863, 1003
TatI WGTACW 2 cut(s) 960, 1020
TfiI GAWTC 4 cut(s) 157, 480, 736, 1095
Tru1I TTAA 1 cut(s) 620
Tru9I TTAA 1 cut(s) 620
TscAI CASTG 1 cut(s) 260
TseFI GTSAC 3 cut(s) 623, 632, 673
TseI GCWGC 6 cut(s) 100, 341, 350, 353, 996, 1089
Tsp45I GTSAC 3 cut(s) 623, 632, 673
TspDTI ATGAA 5 cut(s) 17, 517, 893, 1098, 1119
TspRI CASTG 1 cut(s) 260
Tth111I GACNNNGTC 2 cut(s) 122, 439
Van91I CCANNNNNTGG 2 cut(s) 90, 297
XagI CCTNNNNNAGG 1 cut(s) 538
XapI RAATTY 3 cut(s) 458, 707, 863
XhoI CTCGAG 2 cut(s) 445, 1033
XmiI GTMKAC 1 cut(s) 567
XspI CTAG 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.