Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012387

Physical Location & Seq

Genomic Coordinates Reverse (-)

51923756 .. 51925925

Gene Structure 2170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0372700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGCCCGACGTGAGGCCATCAGTTCCACCCAAGAAAAGAGCTTGGAAGCCCAGCATCAGGTGGAGGAAGCCCGACGTGAGGCCATCAGTTCCACCCAAGAAAGGAGCTTGGAAGCCCAGCATCAGGCATGAGTATGAACTAGTTGAGGCAATTGTCGAGGATATTTTGACGAAACTGAATCGAAACTTGTCATATGCTGCAAAGGGCCTGTTTGGGATGGATAAGCACATTCATCAACTTGAGTTGTTATTATGCATTCCTGCACAAGATGTTTGCTTTCGCAGAGTAGTTATTTGGGGTATGGCTGGTTGTGGTAAGACCACCCTTGCTGATGTTGTATTTCACCGAAACTCATCTAGATTCCATGCTTGTGTGTTTTTAGCAGATGTTAGGGAAGAATCAAAGAAACATGGACTATATCATTTGCGAGATAAACTTCTTCTTCTTGATGATGTGAGTGAGTTAAGGCAATTAGAATTTTTACTTGATCAAGTTCAGTTTGGCCCTGGAAGTAGAATTATTATAACAACGAGAGATAGGTGCCTATTGAAGGATCATATCTACAAGATGAGTGAGTTGTCTGTTGCTGAAGCTCGTCTGCTCTTCCAATCAATTACTTTTAAAGATGACTCTTCTATAAAAGATTATTCAACCTTGTCAAAAAAAGTGGTCGATTATGCTGGATGCAATCCATTAGTTGTTAAAGTTTTGGCTTCCTCATTCCGTCACTGCAATAATAAAGAAGCCTGGGAAGAGGAATTGAAAAAATTGAAAAAATTTCCTAACGAAAAGATACAGGATGTGTTGAGATTGAGTTATGATGGATTAGAAGCAAATGAGAAGGGGATATTTCTTGATATTGCCTGTTTTCTCAAAGGGGAGAATATATGTGATGCAAAAAGAATTTTGGAAATGCTTGGGTTCTTTCCATCGTCGGGAATTGAACTTCTCAAAGATATGTCTCTTATATCGATCAAAAACAACCGCATAGCGATGCATGATTTGCTGCAGGAAATGGGAAGGGCAATTGCTGGTAGTATTGAAGAACTTGGAAAACGCAAAAGATTGTGGAATGCTAAGGATGGCTATCATGTATTGCATAATGAAACAGTACATCTCGTTCATTTCGGCTGCGATTTGGAGCCTTGGTCATCTTCAAGGCTTGGATTTGGTGCTGTTCCACTTCAGGTTTCGATTCGAGTACTCGCTGATCTTCTAAAGGTGAATCGCACTTGTCTTTGTTCTTCTATAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

418

Amino Acids

47.64

Weight (kDa)

9.06

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_ROQ1	PF23282	277 - 344	1.7e-19	Disease resistance protein Roq1-like, winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43190
fragaria_vesca	FvH4_2g33130
malus_domestica	MD08G1084200.v1.1 MD15G1070300.v1.1
prunus_persica	Prupe.1G423100_v2.0.a1
pyrus_communis	pycom08g06980
rosa_chinensis	RchiOBHm_Chr6g0309541
rosa_laevigata	RLG00000010555
rosa_multiflora	Rmu_co8522085.1_g000003 Rmu_sc0007283.1_g000011 Rmu_sc0024715.1_g000004 Rmu_sc0030536.1_g000005
rosa_roxburghii	Rroxscaffold_7G00159320
rosa_rugosa	Rorug06G0372700
rosa_samantha	Rh6AG486100 Rh6BG495500 Rh6CG500500 Rh6DG486400
rosa_wichuraiana	Rw6G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	524
AccB1I	GGYRCC	1 cut(s)	540
AciI	CCGC	1 cut(s)	985
AclWI	GGATC	1 cut(s)	561
AcsI	RAATTY	3 cut(s)	476, 776, 903
AcuI	CTGAAG	2 cut(s)	609, 1169
AfaI	GTAC	2 cut(s)	1113, 1203
AfiI	CCNNNNNNNGG	7 cut(s)	12, 57, 78, 101, 123, 550, 935
AgsI	TTSAA	7 cut(s)	550, 651, 763, 772, 944, 1043, 1158
AhlI	ACTAGT	1 cut(s)	139
AjiI	CACGTC	2 cut(s)	10, 76
AjnI	CCWGG	2 cut(s)	505, 746
AluBI	AGCT	3 cut(s)	41, 107, 593
AluI	AGCT	3 cut(s)	41, 107, 593
Alw26I	GTCTC	1 cut(s)	966
AlwI	GGATC	1 cut(s)	561
AoxI	GGCC	4 cut(s)	14, 80, 205, 502
ApeKI	GCWGC	3 cut(s)	197, 1006, 1131
ApoI	RAATTY	3 cut(s)	476, 776, 903
AspS9I	GGNCC	2 cut(s)	205, 503
AsuHPI	GGTGA	2 cut(s)	335, 1234
BanI	GGYRCC	1 cut(s)	540
BbvI	GCAGC	3 cut(s)	184, 993, 1118
BccI	CCATC	6 cut(s)	25, 91, 211, 815, 937, 1076
BciT130I	CCWGG	2 cut(s)	507, 748
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	966
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	2 cut(s)	140, 357
BfmI	CTRYAG	2 cut(s)	1007, 1248
BisI	GCNGC	3 cut(s)	198, 1007, 1132
BlsI	GCNGC	3 cut(s)	199, 1008, 1133
BmcAI	AGTACT	1 cut(s)	1203
Bme1390I	CCNGG	2 cut(s)	507, 748
BmgBI	CACGTC	2 cut(s)	10, 76
BmgT120I	GGNCC	2 cut(s)	205, 503
BmiI	GGNNCC	2 cut(s)	542, 1143
BmrFI	CCNGG	2 cut(s)	507, 748
BmsI	GCATC	5 cut(s)	63, 129, 674, 883, 984
Bpu10I	CCTNAGC	1 cut(s)	1077
BpuEI	CTTGAG	1 cut(s)	260
Bsa29I	ATCGAT	1 cut(s)	971
BsaBI	GATNNNNATC	1 cut(s)	1086
BsaJI	CCNNGG	3 cut(s)	505, 747, 1145
BsaXI	ACNNNNNCTCC	2 cut(s)	1133, 1163
Bsc4I	CCNNNNNNNGG	7 cut(s)	12, 57, 78, 101, 123, 550, 935
Bse8I	GATNNNNATC	1 cut(s)	1086
BseBI	CCWGG	2 cut(s)	507, 748
BseCI	ATCGAT	1 cut(s)	971
BseDI	CCNNGG	3 cut(s)	505, 747, 1145
BseGI	GGATG	4 cut(s)	222, 689, 805, 1087
BseJI	GATNNNNATC	1 cut(s)	1086
BseLI	CCNNNNNNNGG	7 cut(s)	12, 57, 78, 101, 123, 550, 935
BseXI	GCAGC	3 cut(s)	184, 993, 1118
BseYI	CCCAGC	2 cut(s)	50, 116
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	4 cut(s)	16, 82, 207, 504
BshNI	GGYRCC	1 cut(s)	540
BshVI	ATCGAT	1 cut(s)	971
BslI	CCNNNNNNNGG	7 cut(s)	12, 57, 78, 101, 123, 550, 935
BsmAI	GTCTC	1 cut(s)	966
BsmI	GAATGC	2 cut(s)	255, 1078
BsnI	GGCC	4 cut(s)	16, 82, 207, 504
Bsp143I	GATC	4 cut(s)	487, 553, 972, 1210
BspACI	CCGC	1 cut(s)	985
BspANI	GGCC	4 cut(s)	16, 82, 207, 504
BspDI	ATCGAT	1 cut(s)	971
BspLI	GGNNCC	2 cut(s)	542, 1143
BspMAI	CTGCAG	1 cut(s)	1011
BspPI	GGATC	1 cut(s)	561
BspQI	GCTCTTC	1 cut(s)	608
BspT107I	GGYRCC	1 cut(s)	540
BssECI	CCNNGG	3 cut(s)	505, 747, 1145
BssMI	GATC	4 cut(s)	487, 553, 972, 1210
BssT1I	CCWWGG	1 cut(s)	1145
Bst2UI	CCWGG	2 cut(s)	507, 748
Bst4CI	ACNGT	1 cut(s)	1111
Bst6I	CTCTTC	3 cut(s)	608, 637, 747
BstAPI	GCANNNNNTGC	1 cut(s)	1003
BstDEI	CTNAG	1 cut(s)	1077
BstENI	CCTNNNNNAGG	1 cut(s)	548
BstF5I	GGATG	4 cut(s)	222, 689, 805, 1087
BstKTI	GATC	4 cut(s)	490, 556, 975, 1213
BstMAI	GTCTC	1 cut(s)	966
BstMBI	GATC	4 cut(s)	487, 553, 972, 1210
BstMWI	GCNNNNNNNGC	1 cut(s)	1003
BstNI	CCWGG	2 cut(s)	507, 748
BstSCI	CCNGG	2 cut(s)	505, 746
BstSFI	CTRYAG	2 cut(s)	1007, 1248
BstV1I	GCAGC	3 cut(s)	184, 993, 1118
Bsu15I	ATCGAT	1 cut(s)	971
BsuRI	GGCC	4 cut(s)	16, 82, 207, 504
BsuTUI	ATCGAT	1 cut(s)	971
BtgZI	GCGATG	1 cut(s)	1007
BtrI	CACGTC	2 cut(s)	10, 76
BtsCI	GGATG	4 cut(s)	222, 689, 805, 1087
BtsI	GCAGTG	1 cut(s)	727
BtsIMutI	CAGTG	1 cut(s)	727
Cfr13I	GGNCC	2 cut(s)	205, 503
ClaI	ATCGAT	1 cut(s)	971
Csp6I	GTAC	2 cut(s)	1112, 1202
CspCI	CAANNNNNGTGG	2 cut(s)	648, 683
CviAII	CATG	6 cut(s)	128, 365, 410, 998, 1091, 1254
CviQI	GTAC	2 cut(s)	1112, 1202
DdeI	CTNAG	1 cut(s)	1077
DpnI	GATC	4 cut(s)	489, 555, 974, 1212
DpnII	GATC	4 cut(s)	487, 553, 972, 1210
DraI	TTTAAA	1 cut(s)	622
Eam1104I	CTCTTC	3 cut(s)	608, 637, 747
EarI	CTCTTC	3 cut(s)	608, 637, 747
Eco130I	CCWWGG	1 cut(s)	1145
Eco57I	CTGAAG	2 cut(s)	609, 1169
EcoNI	CCTNNNNNAGG	1 cut(s)	548
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	2 cut(s)	505, 746
EcoT14I	CCWWGG	1 cut(s)	1145
EcoT22I	ATGCAT	2 cut(s)	257, 999
ErhI	CCWWGG	1 cut(s)	1145
FaeI	CATG	6 cut(s)	131, 368, 413, 1001, 1094, 1257
FatI	CATG	6 cut(s)	127, 364, 409, 997, 1090, 1253
FauNDI	CATATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	3 cut(s)	198, 1007, 1132
FokI	GGATG	4 cut(s)	229, 696, 812, 1094
Fsp4HI	GCNGC	3 cut(s)	198, 1007, 1132
FspBI	CTAG	2 cut(s)	140, 357
GluI	GCNGC	3 cut(s)	198, 1007, 1132
GsaI	CCCAGC	2 cut(s)	54, 120
HaeIII	GGCC	4 cut(s)	16, 82, 207, 504
Hin1II	CATG	6 cut(s)	131, 368, 413, 1001, 1094, 1257
HinfI	GANTC	6 cut(s)	178, 360, 398, 629, 1195, 1225
HphI	GGTGA	2 cut(s)	335, 1234
Hpy188III	TCNNGA	4 cut(s)	357, 446, 854, 936
Hpy99I	CGWCG	3 cut(s)	11, 77, 937
HpyAV	CCTTC	3 cut(s)	544, 835, 1014
HpyCH4III	ACNGT	1 cut(s)	1111
HpyCH4IV	ACGT	2 cut(s)	9, 75
HpyCH4V	TGCA	9 cut(s)	200, 255, 263, 687, 732, 896, 997, 1009, 1099
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1003
HpyF3I	CTNAG	1 cut(s)	1077
HpySE526I	ACGT	2 cut(s)	9, 75
Hsp92II	CATG	6 cut(s)	131, 368, 413, 1001, 1094, 1257
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	4 cut(s)	487, 553, 972, 1210
LguI	GCTCTTC	1 cut(s)	608
LmnI	GCTCC	2 cut(s)	104, 1141
Lsp1109I	GCAGC	3 cut(s)	184, 993, 1118
LweI	GCATC	5 cut(s)	63, 129, 674, 883, 984
MaeI	CTAG	2 cut(s)	140, 357
MaeII	ACGT	2 cut(s)	9, 75
MaeIII	GTNAC	1 cut(s)	725
MalI	GATC	4 cut(s)	489, 555, 974, 1212
MboI	GATC	4 cut(s)	487, 553, 972, 1210
MfeI	CAATTG	2 cut(s)	150, 1026
MlyI	GAGTC	1 cut(s)	623
MnlI	CCTC	7 cut(s)	6, 57, 72, 139, 151, 727, 748
Mph1103I	ATGCAT	2 cut(s)	257, 999
MseI	TTAA	3 cut(s)	464, 621, 702
MslI	CAYNNNNRTG	3 cut(s)	132, 369, 992
MspR9I	CCNGG	2 cut(s)	507, 748
MunI	CAATTG	2 cut(s)	150, 1026
Mva1269I	GAATGC	2 cut(s)	255, 1078
MvaI	CCWGG	2 cut(s)	507, 748
MwoI	GCNNNNNNNGC	1 cut(s)	1003
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	4 cut(s)	487, 553, 972, 1210
NlaIII	CATG	6 cut(s)	131, 368, 413, 1001, 1094, 1257
NlaIV	GGNNCC	2 cut(s)	542, 1143
NmuCI	GTSAC	1 cut(s)	725
NsiI	ATGCAT	2 cut(s)	257, 999
PciSI	GCTCTTC	1 cut(s)	608
PctI	GAATGC	2 cut(s)	255, 1078
PfeI	GAWTC	5 cut(s)	178, 360, 398, 1195, 1225
PkrI	GCNGC	3 cut(s)	199, 1008, 1133
PleI	GAGTC	1 cut(s)	623
PpsI	GAGTC	1 cut(s)	623
PsiI	TTATAA	1 cut(s)	524
Psp6I	CCWGG	2 cut(s)	505, 746
PspFI	CCCAGC	2 cut(s)	50, 116
PspGI	CCWGG	2 cut(s)	505, 746
PspN4I	GGNNCC	2 cut(s)	542, 1143
PspPI	GGNCC	2 cut(s)	205, 503
PsrI	GAACNNNNNNTAC	2 cut(s)	1104, 1136
PstI	CTGCAG	1 cut(s)	1011
RsaI	GTAC	2 cut(s)	1113, 1203
RsaNI	GTAC	2 cut(s)	1112, 1202
RseI	CAYNNNNRTG	3 cut(s)	132, 369, 992
SapI	GCTCTTC	1 cut(s)	608
SaqAI	TTAA	3 cut(s)	464, 621, 702
SatI	GCNGC	3 cut(s)	198, 1007, 1132
Sau3AI	GATC	4 cut(s)	487, 553, 972, 1210
Sau96I	GGNCC	2 cut(s)	205, 503
ScaI	AGTACT	1 cut(s)	1203
SchI	GAGTC	1 cut(s)	623
ScrFI	CCNGG	2 cut(s)	507, 748
SfaNI	GCATC	5 cut(s)	63, 129, 674, 883, 984
SfcI	CTRYAG	2 cut(s)	1007, 1248
SmiMI	CAYNNNNRTG	3 cut(s)	132, 369, 992
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SpeI	ACTAGT	1 cut(s)	139
SsiI	CCGC	1 cut(s)	985
SspMI	CTAG	2 cut(s)	140, 357
StyD4I	CCNGG	2 cut(s)	505, 746
StyI	CCWWGG	1 cut(s)	1145
TaaI	ACNGT	1 cut(s)	1111
TaiI	ACGT	2 cut(s)	12, 78
TaqI	TCGA	6 cut(s)	156, 181, 672, 971, 1193, 1198
TatI	WGTACW	2 cut(s)	1111, 1201
TfiI	GAWTC	5 cut(s)	178, 360, 398, 1195, 1225
Tru1I	TTAA	3 cut(s)	464, 621, 702
Tru9I	TTAA	3 cut(s)	464, 621, 702
TscAI	CASTG	1 cut(s)	734
TseFI	GTSAC	1 cut(s)	725
TseI	GCWGC	3 cut(s)	197, 1006, 1131
Tsp45I	GTSAC	1 cut(s)	725
TspDTI	ATGAA	4 cut(s)	150, 221, 1112, 1119
TspGWI	ACGGA	1 cut(s)	713
TspRI	CASTG	1 cut(s)	734
XagI	CCTNNNNNAGG	1 cut(s)	548
XapI	RAATTY	3 cut(s)	476, 776, 903
XbaI	TCTAGA	1 cut(s)	356
XspI	CTAG	2 cut(s)	140, 357
ZrmI	AGTACT	1 cut(s)	1203
Zsp2I	ATGCAT	2 cut(s)	257, 999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.