Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024715.1

Orthogroup ID

OG0012387

Physical Location & Seq

Genomic Coordinates Forward (+)

11740 .. 12834

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024715.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atgggctcgccggagatggacgccggaatatggagcaacttaccggaggaactcctggatcgtattctctccatgctgcctctcaaaaccttcatggttctgagatcaacttgcaagcatttcaagtctctgttattctctcccactttcatttccaagcactcttcctccaattcctcacccttctcttcttttctcatgctttctcacccgcagtgctatcccgacttccctctctacgactcgcagctctgcgcgtggcgcagcttcgctctttcactgtcggaattgctaccctgcgctgcaggaccagtctctctgctctccatctccaatgggctgctctgtttctctctgcccggctcgtcttcctttgttgtctgtaacttcttgaccaagtcatcgagagtgatccaataccctacctacccttttcattttgagctgcttactctggtttccactccagttgggtacaatattttcatgctctcttctgagtcttccaccaagactagaacctttgtatatgattcgaaggtccagtcttggcaaaatttaatctcattggatacaattctcagtgacaatcatcatcaagaaggtgttcatttcaatgggtctctctacttttcgaccccggagccattctcaattgtcaactttaatttggagagtggtaaatgggagagacacaatactgaactccccggagagctcgtttttgttcgattagtgagtgatgaaggaaaagggaagatgtatttgattggtgggattggtaggaatgggatttcaaggagaatgaaaatctgggaactgtgtgaaggaaagaattgggtggagattgagagtgtgcctgaaatgatgtgcagaaagataatgtcagtttgttaccataattacgagcatctgtattgcttttggcatcagggtttaatctgtgtttgctgccatgcgtggcctgagattttgtattacaaggtttcgaggaggacttggcattggctccccaaaagcccttcggtgccggaaagatgggcttgtggcttcaggtggttttcttttgtgccggagttgtatgcttcagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

364

Amino Acids

41.77

Weight (kDa)

7.17

Isoelectric Point (pI)

57.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43190
fragaria_vesca	FvH4_2g33130
malus_domestica	MD08G1084200.v1.1 MD15G1070300.v1.1
prunus_persica	Prupe.1G423100_v2.0.a1
pyrus_communis	pycom08g06980
rosa_chinensis	RchiOBHm_Chr6g0309541
rosa_laevigata	RLG00000010555
rosa_multiflora	Rmu_co8522085.1_g000003 Rmu_sc0007283.1_g000011 Rmu_sc0024715.1_g000004 Rmu_sc0030536.1_g000005
rosa_roxburghii	Rroxscaffold_7G00159320
rosa_rugosa	Rorug06G0372700
rosa_samantha	Rh6AG486100 Rh6BG495500 Rh6CG500500 Rh6DG486400
rosa_wichuraiana	Rw6G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1027
AccII	CGCG	1 cut(s)	257
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	2 cut(s)	66, 406
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	2 cut(s)	1036, 1071
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	1 cut(s)	30
AgsI	TTSAA	3 cut(s)	124, 616, 798
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	4 cut(s)	250, 267, 445, 718
AluI	AGCT	4 cut(s)	250, 267, 445, 718
Alw21I	GWGCWC	1 cut(s)	720
Alw26I	GTCTC	4 cut(s)	132, 319, 627, 685
AlwI	GGATC	2 cut(s)	66, 406
AoxI	GGCC	1 cut(s)	962
ApeKI	GCWGC	7 cut(s)	76, 247, 264, 302, 340, 445, 951
ApoI	RAATTY	1 cut(s)	556
ArsI	GACNNNNNNTTYG	2 cut(s)	530, 562
Asp700I	GAANNNNTTC	1 cut(s)	606
AspLEI	GCGC	3 cut(s)	257, 264, 302
AspS9I	GGNCC	2 cut(s)	308, 541
AsuC2I	CCSGG	3 cut(s)	360, 641, 711
AsuHPI	GGTGA	2 cut(s)	171, 200
AsuII	TTCGAA	1 cut(s)	536
AvaII	GGWCC	2 cut(s)	308, 541
BanI	GGYRCC	1 cut(s)	1027
BanII	GRGCYC	2 cut(s)	8, 720
BbsI	GAAGAC	2 cut(s)	360, 495
Bbv12I	GWGCWC	1 cut(s)	720
BbvI	GCAGC	7 cut(s)	63, 259, 276, 289, 327, 432, 938
BccI	CCATC	3 cut(s)	10, 335, 1032
BciT130I	CCWGG	1 cut(s)	56
BciVI	GTATCC	1 cut(s)	565
BcnI	CCSGG	3 cut(s)	360, 641, 711
BcoDI	GTCTC	4 cut(s)	132, 319, 627, 685
BfaI	CTAG	1 cut(s)	516
BfmI	CTRYAG	1 cut(s)	303
BfuI	GTATCC	1 cut(s)	565
BisI	GCNGC	7 cut(s)	77, 248, 265, 303, 341, 446, 952
BlsI	GCNGC	7 cut(s)	78, 249, 266, 304, 342, 447, 953
Bme1390I	CCNGG	4 cut(s)	56, 360, 641, 711
Bme18I	GGWCC	2 cut(s)	308, 541
BmgT120I	GGNCC	2 cut(s)	308, 541
BmiI	GGNNCC	3 cut(s)	645, 1010, 1029
BmrFI	CCNGG	4 cut(s)	56, 360, 641, 711
BmsI	GCATC	2 cut(s)	919, 937
BpiI	GAAGAC	2 cut(s)	360, 495
BplI	GAGNNNNNCTC	2 cut(s)	635, 667
BpmI	CTGGAG	1 cut(s)	450
Bpu14I	TTCGAA	1 cut(s)	536
BpuMI	CCSGG	3 cut(s)	360, 641, 711
BsaHI	GRCGYC	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	627
BsaJI	CCNNGG	2 cut(s)	639, 709
BsaWI	WCCGGW	1 cut(s)	43
BsaXI	ACNNNNNCTCC	4 cut(s)	152, 182, 705, 735
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse1I	ACTGG	3 cut(s)	311, 467, 544
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	639, 709
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseMII	CTCAG	4 cut(s)	92, 489, 595, 957
BseNI	ACTGG	3 cut(s)	311, 467, 544
BseRI	GAGGAG	1 cut(s)	1006
BseXI	GCAGC	7 cut(s)	63, 259, 276, 289, 327, 432, 938
BsgI	GTGCAG	1 cut(s)	892
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	1 cut(s)	964
BshNI	GGYRCC	1 cut(s)	1027
BsiHKAI	GWGCWC	1 cut(s)	720
BsiSI	CCGG	8 cut(s)	11, 24, 44, 360, 641, 711, 1031, 1073
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmAI	GTCTC	4 cut(s)	132, 319, 627, 685
BsnI	GGCC	1 cut(s)	964
Bso31I	GGTCTC	1 cut(s)	627
Bsp119I	TTCGAA	1 cut(s)	536
Bsp1286I	GDGCHC	2 cut(s)	8, 720
Bsp143I	GATC	3 cut(s)	58, 104, 411
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	1 cut(s)	964
BspCNI	CTCAG	4 cut(s)	93, 490, 594, 958
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	3 cut(s)	645, 1010, 1029
BspMAI	CTGCAG	1 cut(s)	307
BspPI	GGATC	2 cut(s)	66, 406
BspT104I	TTCGAA	1 cut(s)	536
BspT107I	GGYRCC	1 cut(s)	1027
BspTNI	GGTCTC	1 cut(s)	627
BsrI	ACTGG	3 cut(s)	311, 467, 544
BssECI	CCNNGG	2 cut(s)	639, 709
BssMI	GATC	3 cut(s)	58, 104, 411
BssNI	GRCGYC	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	2 cut(s)	282, 822
Bst6I	CTCTTC	3 cut(s)	169, 193, 499
BstACI	GRCGYC	1 cut(s)	21
BstBI	TTCGAA	1 cut(s)	536
BstC8I	GCNNGC	2 cut(s)	8, 116
BstDEI	CTNAG	4 cut(s)	101, 498, 581, 966
BstFNI	CGCG	1 cut(s)	257
BstHHI	GCGC	3 cut(s)	257, 264, 302
BstKTI	GATC	3 cut(s)	61, 107, 414
BstMAI	GTCTC	4 cut(s)	132, 319, 627, 685
BstMBI	GATC	3 cut(s)	58, 104, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	4 cut(s)	54, 358, 639, 709
BstSFI	CTRYAG	1 cut(s)	303
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	7 cut(s)	63, 259, 276, 289, 327, 432, 938
BstV2I	GAAGAC	2 cut(s)	360, 495
BsuI	GTATCC	1 cut(s)	565
BsuRI	GGCC	1 cut(s)	964
BtsI	GCAGTG	1 cut(s)	221
BtsIMutI	CAGTG	4 cut(s)	221, 278, 589, 1095
Cac8I	GCNNGC	2 cut(s)	8, 116
CfoI	GCGC	3 cut(s)	257, 264, 302
Cfr13I	GGNCC	2 cut(s)	308, 541
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	475
CspCI	CAANNNNNGTGG	2 cut(s)	451, 486
CviAII	CATG	5 cut(s)	73, 94, 199, 487, 956
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	4 cut(s)	101, 498, 581, 966
DpnI	GATC	3 cut(s)	60, 106, 413
DpnII	GATC	3 cut(s)	58, 104, 411
Eam1104I	CTCTTC	3 cut(s)	169, 193, 499
EarI	CTCTTC	3 cut(s)	169, 193, 499
Ecl136II	GAGCTC	1 cut(s)	718
Eco24I	GRGCYC	2 cut(s)	8, 720
Eco31I	GGTCTC	1 cut(s)	627
Eco47I	GGWCC	2 cut(s)	308, 541
Eco53kI	GAGCTC	1 cut(s)	718
Eco57I	CTGAAG	2 cut(s)	1036, 1071
EcoICRI	GAGCTC	1 cut(s)	718
EcoRII	CCWGG	1 cut(s)	54
EcoT38I	GRGCYC	2 cut(s)	8, 720
FaeI	CATG	5 cut(s)	76, 97, 202, 490, 959
FalI	AAGNNNNNCTT	2 cut(s)	1027, 1059
FatI	CATG	5 cut(s)	72, 93, 198, 486, 955
FauI	CCCGC	1 cut(s)	219
Fnu4HI	GCNGC	7 cut(s)	77, 248, 265, 303, 341, 446, 952
FriOI	GRGCYC	2 cut(s)	8, 720
Fsp4HI	GCNGC	7 cut(s)	77, 248, 265, 303, 341, 446, 952
FspBI	CTAG	1 cut(s)	516
GlaI	GCGC	3 cut(s)	256, 263, 301
GluI	GCNGC	7 cut(s)	77, 248, 265, 303, 341, 446, 952
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	964
HapII	CCGG	8 cut(s)	11, 24, 44, 360, 641, 711, 1031, 1073
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	3 cut(s)	257, 264, 302
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	5 cut(s)	76, 97, 202, 490, 959
Hin6I	GCGC	3 cut(s)	255, 262, 300
HinP1I	GCGC	3 cut(s)	255, 262, 300
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HinfI	GANTC	3 cut(s)	242, 500, 533
HpaII	CCGG	8 cut(s)	11, 24, 44, 360, 641, 711, 1031, 1073
HphI	GGTGA	2 cut(s)	171, 200
Hpy166II	GTNNAC	1 cut(s)	661
Hpy188I	TCNGA	3 cut(s)	102, 286, 499
Hpy188III	TCNNGA	4 cut(s)	224, 391, 405, 599
Hpy8I	GTNNAC	1 cut(s)	661
HpyAV	CCTTC	7 cut(s)	100, 193, 532, 596, 740, 821, 1032
HpyCH4III	ACNGT	2 cut(s)	282, 822
HpyCH4V	TGCA	3 cut(s)	114, 305, 873
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	4 cut(s)	101, 498, 581, 966
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	5 cut(s)	76, 97, 202, 490, 959
HspAI	GCGC	3 cut(s)	255, 262, 300
Kzo9I	GATC	3 cut(s)	58, 104, 411
LmnI	GCTCC	3 cut(s)	33, 643, 1014
Lsp1109I	GCAGC	7 cut(s)	63, 259, 276, 289, 327, 432, 938
LweI	GCATC	2 cut(s)	919, 937
MaeI	CTAG	1 cut(s)	516
MaeIII	GTNAC	3 cut(s)	383, 584, 893
MalI	GATC	3 cut(s)	60, 106, 413
MboI	GATC	3 cut(s)	58, 104, 411
MboII	GAAGA	6 cut(s)	156, 180, 360, 486, 495, 769
MfeI	CAATTG	1 cut(s)	654
MhlI	GDGCHC	2 cut(s)	8, 720
MluCI	AATT	8 cut(s)	172, 287, 556, 576, 654, 667, 835, 901
MlyI	GAGTC	2 cut(s)	236, 509
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	7 cut(s)	40, 90, 178, 187, 243, 984, 987
MroXI	GAANNNNTTC	1 cut(s)	606
MseI	TTAA	3 cut(s)	560, 666, 938
MslI	CAYNNNNRTG	1 cut(s)	615
MspI	CCGG	8 cut(s)	11, 24, 44, 360, 641, 711, 1031, 1073
MspR9I	CCNGG	4 cut(s)	56, 360, 641, 711
MunI	CAATTG	1 cut(s)	654
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	261
NciI	CCSGG	3 cut(s)	360, 641, 711
NdeII	GATC	3 cut(s)	58, 104, 411
NlaIII	CATG	5 cut(s)	76, 97, 202, 490, 959
NlaIV	GGNNCC	3 cut(s)	645, 1010, 1029
NmuCI	GTSAC	1 cut(s)	584
NspV	TTCGAA	1 cut(s)	536
PdmI	GAANNNNTTC	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	533
PflFI	GACNNNGTC	1 cut(s)	397
PfoI	TCCNGGA	1 cut(s)	54
PkrI	GCNGC	7 cut(s)	78, 249, 266, 304, 342, 447, 953
PleI	GAGTC	2 cut(s)	236, 508
PpsI	GAGTC	2 cut(s)	236, 508
Psp124BI	GAGCTC	1 cut(s)	720
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	3 cut(s)	645, 1010, 1029
PspPI	GGNCC	2 cut(s)	308, 541
PstI	CTGCAG	1 cut(s)	307
PsyI	GACNNNGTC	1 cut(s)	397
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	615
SacI	GAGCTC	1 cut(s)	720
SaqAI	TTAA	3 cut(s)	560, 666, 938
SatI	GCNGC	7 cut(s)	77, 248, 265, 303, 341, 446, 952
Sau3AI	GATC	3 cut(s)	58, 104, 411
Sau96I	GGNCC	2 cut(s)	308, 541
SchI	GAGTC	2 cut(s)	236, 509
ScrFI	CCNGG	4 cut(s)	56, 360, 641, 711
SduI	GDGCHC	2 cut(s)	8, 720
SfaNI	GCATC	2 cut(s)	919, 937
SfcI	CTRYAG	1 cut(s)	303
SfuI	TTCGAA	1 cut(s)	536
SinI	GGWCC	2 cut(s)	308, 541
SmiMI	CAYNNNNRTG	1 cut(s)	615
Sse9I	AATT	8 cut(s)	172, 287, 556, 576, 654, 667, 835, 901
SsiI	CCGC	1 cut(s)	212
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	1 cut(s)	516
SstI	GAGCTC	1 cut(s)	720
StyD4I	CCNGG	4 cut(s)	54, 358, 639, 709
TaaI	ACNGT	2 cut(s)	282, 822
TaqI	TCGA	5 cut(s)	404, 536, 635, 730, 989
TasI	AATT	8 cut(s)	172, 287, 556, 576, 654, 667, 835, 901
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	3 cut(s)	560, 666, 938
Tru9I	TTAA	3 cut(s)	560, 666, 938
TscAI	CASTG	4 cut(s)	221, 285, 589, 1095
TseFI	GTSAC	1 cut(s)	584
TseI	GCWGC	7 cut(s)	76, 247, 264, 302, 340, 445, 951
Tsp45I	GTSAC	1 cut(s)	584
TspDTI	ATGAA	7 cut(s)	82, 139, 425, 475, 599, 759, 821
TspRI	CASTG	4 cut(s)	221, 285, 589, 1095
Tth111I	GACNNNGTC	1 cut(s)	397
VpaK11BI	GGWCC	2 cut(s)	308, 541
XapI	RAATTY	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	606
XspI	CTAG	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.