Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0012387

Physical Location & Seq

Genomic Coordinates Forward (+)

5558490 .. 5559578

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGATGCCGGAATATGGAGCAAGCTGCCGGAGGAGCTCCTCGAGCTCGTCCTCTCTTTCCTCCCTCTCAAAAACTTACTGAATCTTCGATCGACTTGCAAGCGCTTCAAGTCTCTGTTATTCTCTCCCTCCTTCGTCTTCAAGCACTCCTCCTCCCCCTTCCCCTCCTTCCTCCTCCTCTCCCACCCTCAGTGCTTCCACCACTTCCCTCTCTACGACACCGCCGCCGCCACCTGGCGCAAGTTACCTTTCTCTCTCTCTCCTCTGCTACCCTGCGCAACAGGCACAGCACAAGCCTCCCTCCTCTCTTCCTCCAATGGGTTGCTCTGTTTCTTTCTCCCCAATTCGTTTCTCGTCTTGAACCTTATGACCAAGTCCTCCAGAGTGATCGAATTCCCATATTACCCTTTTGGATTCGAGATTTTCTCTTTGATTTCCACCTCTGCTGGGTACAATCTGTTCATGATCTCTTCCGGGTCGTCTTCCAAAAGCACTTTGCTCTACGATTCGAAGGCCCAATCTTGGCAAAAATTCAACTTTTCCGAGACGGTTTTAAGCAACAATTGTCAGGAGAAGGGAGTTTACTTCAAAGGGTGTTTGTATTTCGTGACGCCGGAGCCGTTTTCGATTGTCTGCTTTGAATTAGAGAGCGGGAAGTGGGAAAGACCGATTCCGGAGCTTCCGGCGGAGCTCATGTTTGCTCGGCTAGTCAGCAGCGGAGACGGCGGAGGAGGAGAGGGGAAGAAGCTGTGTCTGATTGGTGGGGTCGGCAGAAATGGGATTGCCAGGAGCTTGAAAGTGTGGGAATGGGAATGCAGCGGCGGAATGAAGTGGGTGGAGGTGGAGAGATTGCCGGAAAGGATGTGCAAGAAGTTGATGTCGGTTTGTTTCCACAACTACGAGCACCTGTACTGCTTTTGGCATCAGGGTTTGATCTGCGTCTGCTGCTACAATTGGCCGGAGGTTTTGTACTTCAAGGTTTCGAGGAGGACGTGGCATTGGGTCCCCAAATGCCCTTCTCTGCCGGATAAATCCAACTGCGGGTTCCGGTGGTTTTCCTTTGTGCCGAACTTGTATGCATCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

363

Amino Acids

41.16

Weight (kDa)

8.76

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	6 - 47	1.3e-10	F-box domain
F-box-like	PF12937	6 - 45	1.6e-09	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43190
fragaria_vesca	FvH4_2g33130
malus_domestica	MD08G1084200.v1.1 MD15G1070300.v1.1
prunus_persica	Prupe.1G423100_v2.0.a1
pyrus_communis	pycom08g06980
rosa_chinensis	RchiOBHm_Chr6g0309541
rosa_laevigata	RLG00000010555
rosa_multiflora	Rmu_co8522085.1_g000003 Rmu_sc0007283.1_g000011 Rmu_sc0024715.1_g000004 Rmu_sc0030536.1_g000005
rosa_roxburghii	Rroxscaffold_7G00159320
rosa_rugosa	Rorug06G0372700
rosa_samantha	Rh6AG486100 Rh6BG495500 Rh6CG500500 Rh6DG486400
rosa_wichuraiana	Rw6G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	277
AccBSI	CCGCTC	1 cut(s)	651
AccIII	TCCGGA	1 cut(s)	673
AcoI	YGGCCR	1 cut(s)	956
AcsI	RAATTY	2 cut(s)	392, 530
AcyI	GRCGYC	1 cut(s)	611
AfaI	GTAC	3 cut(s)	452, 911, 971
AfeI	AGCGCT	1 cut(s)	104
AfiI	CCNNNNNNNGG	6 cut(s)	15, 234, 318, 447, 522, 1041
AgsI	TTSAA	8 cut(s)	109, 142, 361, 535, 589, 641, 796, 976
AjiI	CACGTC	1 cut(s)	993
AjnI	CCWGG	2 cut(s)	233, 785
AjuI	GAANNNNNNNTTGG	2 cut(s)	1028, 1060
AluBI	AGCT	7 cut(s)	25, 37, 46, 679, 691, 748, 792
AluI	AGCT	7 cut(s)	25, 37, 46, 679, 691, 748, 792
Alw21I	GWGCWC	4 cut(s)	39, 48, 693, 906
Alw26I	GTCTC	3 cut(s)	117, 539, 714
Ama87I	CYCGRG	1 cut(s)	41
Aor13HI	TCCGGA	1 cut(s)	673
Aor51HI	AGCGCT	1 cut(s)	104
AoxI	GGCC	2 cut(s)	513, 956
ApeKI	GCWGC	4 cut(s)	25, 714, 816, 945
ApoI	RAATTY	2 cut(s)	392, 530
AspLEI	GCGC	3 cut(s)	105, 240, 278
AspS9I	GGNCC	2 cut(s)	514, 1003
AsuC2I	CCSGG	1 cut(s)	475
AsuII	TTCGAA	1 cut(s)	509
AvaI	CYCGRG	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	1003
BanII	GRGCYC	3 cut(s)	39, 48, 693
BarI	GAAGNNNNNNTAC	2 cut(s)	566, 598
BbsI	GAAGAC	2 cut(s)	130, 474
Bbv12I	GWGCWC	4 cut(s)	39, 48, 693, 906
BbvI	GCAGC	4 cut(s)	12, 726, 828, 932
BceAI	ACGGC	2 cut(s)	604, 739
BcgI	CGANNNNNNTGC	2 cut(s)	78, 112
BciT130I	CCWGG	2 cut(s)	235, 787
BcnI	CCSGG	1 cut(s)	475
BcoDI	GTCTC	3 cut(s)	117, 539, 714
BfaI	CTAG	1 cut(s)	707
BfoI	RGCGCY	1 cut(s)	106
BisI	GCNGC	7 cut(s)	26, 225, 228, 715, 817, 820, 946
BlsI	GCNGC	7 cut(s)	27, 226, 229, 716, 818, 821, 947
Bme1390I	CCNGG	3 cut(s)	235, 475, 787
Bme18I	GGWCC	1 cut(s)	1003
BmeT110I	CYCGRG	1 cut(s)	41
BmgBI	CACGTC	1 cut(s)	993
BmgT120I	GGNCC	2 cut(s)	514, 1003
BmiI	GGNNCC	4 cut(s)	618, 1004, 1005, 1046
BmrFI	CCNGG	3 cut(s)	235, 475, 787
BmsI	GCATC	1 cut(s)	931
BpiI	GAAGAC	2 cut(s)	130, 474
BplI	GAGNNNNNCTC	2 cut(s)	410, 442
BpmI	CTGGAG	1 cut(s)	364
Bpu14I	TTCGAA	1 cut(s)	509
BpuMI	CCSGG	1 cut(s)	475
BsaHI	GRCGYC	1 cut(s)	611
BsaWI	WCCGGW	2 cut(s)	673, 1047
BsaXI	ACNNNNNCTCC	6 cut(s)	137, 167, 680, 710, 953, 983
Bsc4I	CCNNNNNNNGG	6 cut(s)	15, 234, 318, 447, 522, 1041
BseAI	TCCGGA	1 cut(s)	673
BseBI	CCWGG	2 cut(s)	235, 787
BseGI	GGATG	2 cut(s)	10, 867
BseLI	CCNNNNNNNGG	6 cut(s)	15, 234, 318, 447, 522, 1041
BseMII	CTCAG	1 cut(s)	203
BseXI	GCAGC	4 cut(s)	12, 726, 828, 932
BseYI	CCCAGC	1 cut(s)	446
Bsh1285I	CGRYCG	1 cut(s)	92
BshFI	GGCC	2 cut(s)	515, 958
BsiEI	CGRYCG	1 cut(s)	92
BsiHKAI	GWGCWC	4 cut(s)	39, 48, 693, 906
BsiHKCI	CYCGRG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	989
BslI	CCNNNNNNNGG	6 cut(s)	15, 234, 318, 447, 522, 1041
BsmAI	GTCTC	3 cut(s)	117, 539, 714
BsmBI	CGTCTC	2 cut(s)	539, 714
BsmFI	GGGAC	1 cut(s)	989
BsmI	GAATGC	1 cut(s)	818
BsnI	GGCC	2 cut(s)	515, 958
BsoBI	CYCGRG	1 cut(s)	41
Bsp119I	TTCGAA	1 cut(s)	509
Bsp1286I	GDGCHC	4 cut(s)	39, 48, 693, 906
Bsp13I	TCCGGA	1 cut(s)	673
Bsp143I	GATC	4 cut(s)	89, 387, 465, 933
BspANI	GGCC	2 cut(s)	515, 958
BspCNI	CTCAG	1 cut(s)	202
BspEI	TCCGGA	1 cut(s)	673
BspHI	TCATGA	1 cut(s)	462
BspLI	GGNNCC	4 cut(s)	618, 1004, 1005, 1046
BspT104I	TTCGAA	1 cut(s)	509
BsrBI	CCGCTC	1 cut(s)	651
BssMI	GATC	4 cut(s)	89, 387, 465, 933
BssNI	GRCGYC	1 cut(s)	611
Bst2UI	CCWGG	2 cut(s)	235, 787
Bst4CI	ACNGT	1 cut(s)	550
Bst6I	CTCTTC	2 cut(s)	313, 475
BstACI	GRCGYC	1 cut(s)	611
BstBI	TTCGAA	1 cut(s)	509
BstC8I	GCNNGC	2 cut(s)	23, 101
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	10, 867
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	3 cut(s)	105, 240, 278
BstKTI	GATC	4 cut(s)	92, 390, 468, 936
BstMAI	GTCTC	3 cut(s)	117, 539, 714
BstMBI	GATC	4 cut(s)	89, 387, 465, 933
BstMCI	CGRYCG	1 cut(s)	92
BstMWI	GCNNNNNNNGC	5 cut(s)	34, 43, 282, 723, 945
BstNI	CCWGG	2 cut(s)	235, 787
BstSCI	CCNGG	3 cut(s)	233, 473, 785
BstV1I	GCAGC	4 cut(s)	12, 726, 828, 932
BstV2I	GAAGAC	2 cut(s)	130, 474
BsuRI	GGCC	2 cut(s)	515, 958
BtrI	CACGTC	1 cut(s)	993
BtsCI	GGATG	2 cut(s)	10, 867
BtsIMutI	CAGTG	1 cut(s)	197
Cac8I	GCNNGC	2 cut(s)	23, 101
CciI	TCATGA	1 cut(s)	462
CfoI	GCGC	3 cut(s)	105, 240, 278
Cfr13I	GGNCC	2 cut(s)	514, 1003
CseI	GACGC	2 cut(s)	619, 928
Csp6I	GTAC	3 cut(s)	451, 910, 970
CviAII	CATG	2 cut(s)	463, 694
CviQI	GTAC	3 cut(s)	451, 910, 970
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	4 cut(s)	91, 389, 467, 935
DpnII	GATC	4 cut(s)	89, 387, 465, 933
EaeI	YGGCCR	1 cut(s)	956
Eam1104I	CTCTTC	2 cut(s)	313, 475
EarI	CTCTTC	2 cut(s)	313, 475
EciI	GGCGGA	3 cut(s)	701, 741, 837
Ecl136II	GAGCTC	3 cut(s)	37, 46, 691
Eco24I	GRGCYC	3 cut(s)	39, 48, 693
Eco47I	GGWCC	1 cut(s)	1003
Eco47III	AGCGCT	1 cut(s)	104
Eco53kI	GAGCTC	3 cut(s)	37, 46, 691
Eco88I	CYCGRG	1 cut(s)	41
EcoICRI	GAGCTC	3 cut(s)	37, 46, 691
EcoO109I	RGGNCCY	1 cut(s)	1003
EcoRI	GAATTC	1 cut(s)	392
EcoRII	CCWGG	2 cut(s)	233, 785
EcoT22I	ATGCAT	1 cut(s)	1081
EcoT38I	GRGCYC	3 cut(s)	39, 48, 693
Esp3I	CGTCTC	2 cut(s)	539, 714
FaeI	CATG	2 cut(s)	466, 697
FaiI	YATR	6 cut(s)	16, 368, 400, 464, 695, 1077
FaqI	GGGAC	1 cut(s)	989
FatI	CATG	2 cut(s)	462, 693
FauI	CCCGC	2 cut(s)	644, 1034
Fnu4HI	GCNGC	7 cut(s)	26, 225, 228, 715, 817, 820, 946
FokI	GGATG	2 cut(s)	17, 874
FriOI	GRGCYC	3 cut(s)	39, 48, 693
Fsp4HI	GCNGC	7 cut(s)	26, 225, 228, 715, 817, 820, 946
FspBI	CTAG	1 cut(s)	707
FspI	TGCGCA	1 cut(s)	277
GlaI	GCGC	3 cut(s)	104, 239, 277
GluI	GCNGC	7 cut(s)	26, 225, 228, 715, 817, 820, 946
GsaI	CCCAGC	1 cut(s)	450
GsuI	CTGGAG	1 cut(s)	364
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	2 cut(s)	515, 958
HgaI	GACGC	2 cut(s)	619, 928
HhaI	GCGC	3 cut(s)	105, 240, 278
Hin1I	GRCGYC	1 cut(s)	611
Hin1II	CATG	2 cut(s)	466, 697
Hin6I	GCGC	3 cut(s)	103, 238, 276
HinP1I	GCGC	3 cut(s)	103, 238, 276
HinfI	GANTC	4 cut(s)	82, 414, 506, 670
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	2 cut(s)	544, 756
Hpy188III	TCNNGA	7 cut(s)	358, 381, 418, 463, 569, 607, 674
Hpy8I	GTNNAC	1 cut(s)	583
HpyAV	CCTTC	6 cut(s)	142, 169, 178, 505, 568, 1026
HpyCH4III	ACNGT	1 cut(s)	550
HpyCH4IV	ACGT	1 cut(s)	992
HpyCH4V	TGCA	4 cut(s)	99, 816, 867, 1079
HpyF10VI	GCNNNNNNNGC	5 cut(s)	34, 43, 282, 723, 945
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	992
Hsp92I	GRCGYC	1 cut(s)	611
Hsp92II	CATG	2 cut(s)	466, 697
HspAI	GCGC	3 cut(s)	103, 238, 276
KflI	GGGWCCC	1 cut(s)	1003
Kpn2I	TCCGGA	1 cut(s)	673
Kzo9I	GATC	4 cut(s)	89, 387, 465, 933
LmnI	GCTCC	7 cut(s)	18, 34, 42, 616, 676, 688, 789
Lsp1109I	GCAGC	4 cut(s)	12, 726, 828, 932
LweI	GCATC	1 cut(s)	931
MaeI	CTAG	1 cut(s)	707
MaeII	ACGT	1 cut(s)	992
MaeIII	GTNAC	2 cut(s)	243, 607
MalI	GATC	4 cut(s)	91, 389, 467, 935
MbiI	CCGCTC	1 cut(s)	651
MboI	GATC	4 cut(s)	89, 387, 465, 933
MboII	GAAGA	6 cut(s)	77, 130, 300, 462, 474, 754
MfeI	CAATTG	2 cut(s)	562, 952
MhlI	GDGCHC	4 cut(s)	39, 48, 693, 906
MluCI	AATT	6 cut(s)	343, 392, 530, 562, 641, 952
MmeI	TCCRAC	1 cut(s)	1059
Mph1103I	ATGCAT	1 cut(s)	1081
MroI	TCCGGA	1 cut(s)	673
MseI	TTAA	1 cut(s)	554
MspA1I	CMGCKG	2 cut(s)	717, 819
MspR9I	CCNGG	3 cut(s)	235, 475, 787
MunI	CAATTG	2 cut(s)	562, 952
Mva1269I	GAATGC	1 cut(s)	818
MvaI	CCWGG	2 cut(s)	235, 787
MwoI	GCNNNNNNNGC	5 cut(s)	34, 43, 282, 723, 945
NciI	CCSGG	1 cut(s)	475
NdeII	GATC	4 cut(s)	89, 387, 465, 933
NlaIII	CATG	2 cut(s)	466, 697
NlaIV	GGNNCC	4 cut(s)	618, 1004, 1005, 1046
NmeAIII	GCCGAG	1 cut(s)	682
NmuCI	GTSAC	1 cut(s)	607
NsbI	TGCGCA	1 cut(s)	277
NsiI	ATGCAT	1 cut(s)	1081
NspV	TTCGAA	1 cut(s)	509
PaeR7I	CTCGAG	1 cut(s)	41
PagI	TCATGA	1 cut(s)	462
PcsI	WCGNNNNNNNCGW	2 cut(s)	617, 989
PctI	GAATGC	1 cut(s)	818
PfeI	GAWTC	4 cut(s)	82, 414, 506, 670
PflFI	GACNNNGTC	1 cut(s)	373
PkrI	GCNGC	7 cut(s)	27, 226, 229, 716, 818, 821, 947
Ple19I	CGATCG	1 cut(s)	92
PpuMI	RGGWCCY	1 cut(s)	1003
Psp124BI	GAGCTC	3 cut(s)	39, 48, 693
Psp5II	RGGWCCY	1 cut(s)	1003
Psp6I	CCWGG	2 cut(s)	233, 785
PspFI	CCCAGC	1 cut(s)	446
PspGI	CCWGG	2 cut(s)	233, 785
PspN4I	GGNNCC	4 cut(s)	618, 1004, 1005, 1046
PspPI	GGNCC	2 cut(s)	514, 1003
PspPPI	RGGWCCY	1 cut(s)	1003
PspXI	VCTCGAGB	1 cut(s)	41
PsrI	GAACNNNNNNTAC	2 cut(s)	443, 475
PsyI	GACNNNGTC	1 cut(s)	373
PvuI	CGATCG	1 cut(s)	92
RsaI	GTAC	3 cut(s)	452, 911, 971
RsaNI	GTAC	3 cut(s)	451, 910, 970
SacI	GAGCTC	3 cut(s)	39, 48, 693
SaqAI	TTAA	1 cut(s)	554
SatI	GCNGC	7 cut(s)	26, 225, 228, 715, 817, 820, 946
Sau3AI	GATC	4 cut(s)	89, 387, 465, 933
Sau96I	GGNCC	2 cut(s)	514, 1003
ScrFI	CCNGG	3 cut(s)	235, 475, 787
SduI	GDGCHC	4 cut(s)	39, 48, 693, 906
SfaNI	GCATC	1 cut(s)	931
Sfr274I	CTCGAG	1 cut(s)	41
SfuI	TTCGAA	1 cut(s)	509
SinI	GGWCC	1 cut(s)	1003
SlaI	CTCGAG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	6 cut(s)	343, 392, 530, 562, 641, 952
SspMI	CTAG	1 cut(s)	707
SstI	GAGCTC	3 cut(s)	39, 48, 693
StyD4I	CCNGG	3 cut(s)	233, 473, 785
TaaI	ACNGT	1 cut(s)	550
TaiI	ACGT	1 cut(s)	995
TaqI	TCGA	8 cut(s)	42, 88, 92, 390, 417, 509, 626, 983
TaqII	GACCGA	1 cut(s)	682
TasI	AATT	6 cut(s)	343, 392, 530, 562, 641, 952
TatI	WGTACW	2 cut(s)	909, 969
TauI	GCSGC	3 cut(s)	227, 230, 822
TfiI	GAWTC	4 cut(s)	82, 414, 506, 670
Tru1I	TTAA	1 cut(s)	554
Tru9I	TTAA	1 cut(s)	554
TscAI	CASTG	1 cut(s)	197
TseFI	GTSAC	1 cut(s)	607
TseI	GCWGC	4 cut(s)	25, 714, 816, 945
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	2 cut(s)	451, 842
TspRI	CASTG	1 cut(s)	197
Tth111I	GACNNNGTC	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	1003
XapI	RAATTY	2 cut(s)	392, 530
XhoI	CTCGAG	1 cut(s)	41
XspI	CTAG	1 cut(s)	707
Zsp2I	ATGCAT	1 cut(s)	1081

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.