Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030536.1

Orthogroup ID

OG0012387

Physical Location & Seq

Genomic Coordinates Forward (+)

13562 .. 14671

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030536.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atgtccaagtctccaatgggctcgccggagatggacgccggaatatggagcaacttaccggaggaactcctggatcgtattctctccatgctgcctctcaaaaccttcatggttctgagatcaacttgcaagcatttcaagtctctgttattctctcccactttcatttccaagcactcttcctccaattcctcacccttctcttcttttctcatgctttctcacccgcagtgctatcccgacttccctctctacgactcgcagctctgcgcgtggcgcagcttcgctctttcactgtcggaattgctaccctgcgctgcaggaccagtctctctgctctccatctccaatgggctgctctgtttctctctgcccggctcgtcttcctttgttgtctgtaacttcttgaccaagtcatcgagagtgatccaataccctacctacccttttcattttgagctgcttactctggtttccactccagttgggtacaatattttcatgctctcttctgagtcttccaccaagactagaacctttgtatatgattcgaaggtccagtcttggcaaaatttaatctcattggatacaattctcagtgacaatcatcatcaagaaggtgttcatttcaatgggtctctctacttttcgaccccggagccattctcaattgtcaactttaatttggagagtggtaaatgggagagacacaatactgaactccccggagagctcgtttttgttcgattagtgagtgatgaaggaaaagggaagatgtatttgattggtgggattggtaggaatgggatttcaaggagaatgaaaatctgggaactgtgtgaaggaaagaattgggtggagattgagagtgtgcctgaaatgatgtgcagaaagataatgtcagtttgttaccataattacgagcatctgtattgcttttggcatcagggtttaatctgtgtttgctgccatgcgtggcctgagattttgtattacaaggtttcgaggaggacttggcattggctccccaaaagcccttcggtgccggaaagatgggcttgtggcttcaggtggttttcttttgtgccggagttgtatgcttcagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

369

Amino Acids

42.3

Weight (kDa)

7.55

Isoelectric Point (pI)

59.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43190
fragaria_vesca	FvH4_2g33130
malus_domestica	MD08G1084200.v1.1 MD15G1070300.v1.1
prunus_persica	Prupe.1G423100_v2.0.a1
pyrus_communis	pycom08g06980
rosa_chinensis	RchiOBHm_Chr6g0309541
rosa_laevigata	RLG00000010555
rosa_multiflora	Rmu_co8522085.1_g000003 Rmu_sc0007283.1_g000011 Rmu_sc0024715.1_g000004 Rmu_sc0030536.1_g000005
rosa_roxburghii	Rroxscaffold_7G00159320
rosa_rugosa	Rorug06G0372700
rosa_samantha	Rh6AG486100 Rh6BG495500 Rh6CG500500 Rh6DG486400
rosa_wichuraiana	Rw6G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1042
AccII	CGCG	1 cut(s)	272
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	2 cut(s)	81, 421
AcsI	RAATTY	1 cut(s)	571
AcuI	CTGAAG	2 cut(s)	1051, 1086
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	3 cut(s)	139, 631, 813
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	4 cut(s)	265, 282, 460, 733
AluI	AGCT	4 cut(s)	265, 282, 460, 733
Alw21I	GWGCWC	1 cut(s)	735
Alw26I	GTCTC	5 cut(s)	15, 147, 334, 642, 700
AlwI	GGATC	2 cut(s)	81, 421
AoxI	GGCC	1 cut(s)	977
ApeKI	GCWGC	7 cut(s)	91, 262, 279, 317, 355, 460, 966
ApoI	RAATTY	1 cut(s)	571
ArsI	GACNNNNNNTTYG	2 cut(s)	545, 577
Asp700I	GAANNNNTTC	1 cut(s)	621
AspLEI	GCGC	3 cut(s)	272, 279, 317
AspS9I	GGNCC	2 cut(s)	323, 556
AsuC2I	CCSGG	3 cut(s)	375, 656, 726
AsuHPI	GGTGA	2 cut(s)	186, 215
AsuII	TTCGAA	1 cut(s)	551
AvaII	GGWCC	2 cut(s)	323, 556
BanI	GGYRCC	1 cut(s)	1042
BanII	GRGCYC	2 cut(s)	23, 735
BbsI	GAAGAC	2 cut(s)	375, 510
Bbv12I	GWGCWC	1 cut(s)	735
BbvI	GCAGC	7 cut(s)	78, 274, 291, 304, 342, 447, 953
BccI	CCATC	3 cut(s)	25, 350, 1047
BciT130I	CCWGG	1 cut(s)	71
BciVI	GTATCC	1 cut(s)	580
BcnI	CCSGG	3 cut(s)	375, 656, 726
BcoDI	GTCTC	5 cut(s)	15, 147, 334, 642, 700
BfaI	CTAG	1 cut(s)	531
BfmI	CTRYAG	1 cut(s)	318
BfuI	GTATCC	1 cut(s)	580
BisI	GCNGC	7 cut(s)	92, 263, 280, 318, 356, 461, 967
BlsI	GCNGC	7 cut(s)	93, 264, 281, 319, 357, 462, 968
Bme1390I	CCNGG	4 cut(s)	71, 375, 656, 726
Bme18I	GGWCC	2 cut(s)	323, 556
BmgT120I	GGNCC	2 cut(s)	323, 556
BmiI	GGNNCC	3 cut(s)	660, 1025, 1044
BmrFI	CCNGG	4 cut(s)	71, 375, 656, 726
BmsI	GCATC	2 cut(s)	934, 952
BpiI	GAAGAC	2 cut(s)	375, 510
BplI	GAGNNNNNCTC	2 cut(s)	650, 682
BpmI	CTGGAG	1 cut(s)	465
Bpu14I	TTCGAA	1 cut(s)	551
BpuMI	CCSGG	3 cut(s)	375, 656, 726
BsaHI	GRCGYC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	642
BsaJI	CCNNGG	2 cut(s)	654, 724
BsaWI	WCCGGW	1 cut(s)	58
BsaXI	ACNNNNNCTCC	4 cut(s)	167, 197, 720, 750
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse1I	ACTGG	3 cut(s)	326, 482, 559
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	654, 724
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	4 cut(s)	107, 504, 610, 972
BseNI	ACTGG	3 cut(s)	326, 482, 559
BseRI	GAGGAG	1 cut(s)	1021
BseXI	GCAGC	7 cut(s)	78, 274, 291, 304, 342, 447, 953
BsgI	GTGCAG	1 cut(s)	907
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	979
BshNI	GGYRCC	1 cut(s)	1042
BsiHKAI	GWGCWC	1 cut(s)	735
BsiSI	CCGG	8 cut(s)	26, 39, 59, 375, 656, 726, 1046, 1088
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	5 cut(s)	15, 147, 334, 642, 700
BsnI	GGCC	1 cut(s)	979
Bso31I	GGTCTC	1 cut(s)	642
Bsp119I	TTCGAA	1 cut(s)	551
Bsp1286I	GDGCHC	2 cut(s)	23, 735
Bsp143I	GATC	3 cut(s)	73, 119, 426
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	979
BspCNI	CTCAG	4 cut(s)	108, 505, 609, 973
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	3 cut(s)	660, 1025, 1044
BspMAI	CTGCAG	1 cut(s)	322
BspPI	GGATC	2 cut(s)	81, 421
BspT104I	TTCGAA	1 cut(s)	551
BspT107I	GGYRCC	1 cut(s)	1042
BspTNI	GGTCTC	1 cut(s)	642
BsrI	ACTGG	3 cut(s)	326, 482, 559
BssECI	CCNNGG	2 cut(s)	654, 724
BssMI	GATC	3 cut(s)	73, 119, 426
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	297, 837
Bst6I	CTCTTC	3 cut(s)	184, 208, 514
BstACI	GRCGYC	1 cut(s)	36
BstBI	TTCGAA	1 cut(s)	551
BstC8I	GCNNGC	2 cut(s)	23, 131
BstDEI	CTNAG	4 cut(s)	116, 513, 596, 981
BstFNI	CGCG	1 cut(s)	272
BstHHI	GCGC	3 cut(s)	272, 279, 317
BstKTI	GATC	3 cut(s)	76, 122, 429
BstMAI	GTCTC	5 cut(s)	15, 147, 334, 642, 700
BstMBI	GATC	3 cut(s)	73, 119, 426
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	4 cut(s)	69, 373, 654, 724
BstSFI	CTRYAG	1 cut(s)	318
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	7 cut(s)	78, 274, 291, 304, 342, 447, 953
BstV2I	GAAGAC	2 cut(s)	375, 510
BsuI	GTATCC	1 cut(s)	580
BsuRI	GGCC	1 cut(s)	979
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	4 cut(s)	236, 293, 604, 1110
Cac8I	GCNNGC	2 cut(s)	23, 131
CfoI	GCGC	3 cut(s)	272, 279, 317
Cfr13I	GGNCC	2 cut(s)	323, 556
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	490
CspCI	CAANNNNNGTGG	2 cut(s)	466, 501
CviAII	CATG	5 cut(s)	88, 109, 214, 502, 971
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	4 cut(s)	116, 513, 596, 981
DpnI	GATC	3 cut(s)	75, 121, 428
DpnII	GATC	3 cut(s)	73, 119, 426
Eam1104I	CTCTTC	3 cut(s)	184, 208, 514
EarI	CTCTTC	3 cut(s)	184, 208, 514
Ecl136II	GAGCTC	1 cut(s)	733
Eco24I	GRGCYC	2 cut(s)	23, 735
Eco31I	GGTCTC	1 cut(s)	642
Eco47I	GGWCC	2 cut(s)	323, 556
Eco53kI	GAGCTC	1 cut(s)	733
Eco57I	CTGAAG	2 cut(s)	1051, 1086
EcoICRI	GAGCTC	1 cut(s)	733
EcoRII	CCWGG	1 cut(s)	69
EcoT38I	GRGCYC	2 cut(s)	23, 735
FaeI	CATG	5 cut(s)	91, 112, 217, 505, 974
FalI	AAGNNNNNCTT	2 cut(s)	1042, 1074
FatI	CATG	5 cut(s)	87, 108, 213, 501, 970
FauI	CCCGC	1 cut(s)	234
Fnu4HI	GCNGC	7 cut(s)	92, 263, 280, 318, 356, 461, 967
FriOI	GRGCYC	2 cut(s)	23, 735
Fsp4HI	GCNGC	7 cut(s)	92, 263, 280, 318, 356, 461, 967
FspBI	CTAG	1 cut(s)	531
GlaI	GCGC	3 cut(s)	271, 278, 316
GluI	GCNGC	7 cut(s)	92, 263, 280, 318, 356, 461, 967
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	1 cut(s)	979
HapII	CCGG	8 cut(s)	26, 39, 59, 375, 656, 726, 1046, 1088
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	3 cut(s)	272, 279, 317
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	5 cut(s)	91, 112, 217, 505, 974
Hin6I	GCGC	3 cut(s)	270, 277, 315
HinP1I	GCGC	3 cut(s)	270, 277, 315
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HinfI	GANTC	3 cut(s)	257, 515, 548
HpaII	CCGG	8 cut(s)	26, 39, 59, 375, 656, 726, 1046, 1088
HphI	GGTGA	2 cut(s)	186, 215
Hpy166II	GTNNAC	1 cut(s)	676
Hpy188I	TCNGA	3 cut(s)	117, 301, 514
Hpy188III	TCNNGA	4 cut(s)	239, 406, 420, 614
Hpy8I	GTNNAC	1 cut(s)	676
HpyAV	CCTTC	7 cut(s)	115, 208, 547, 611, 755, 836, 1047
HpyCH4III	ACNGT	2 cut(s)	297, 837
HpyCH4V	TGCA	3 cut(s)	129, 320, 888
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpyF3I	CTNAG	4 cut(s)	116, 513, 596, 981
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	5 cut(s)	91, 112, 217, 505, 974
HspAI	GCGC	3 cut(s)	270, 277, 315
Kzo9I	GATC	3 cut(s)	73, 119, 426
LmnI	GCTCC	3 cut(s)	48, 658, 1029
Lsp1109I	GCAGC	7 cut(s)	78, 274, 291, 304, 342, 447, 953
LweI	GCATC	2 cut(s)	934, 952
MaeI	CTAG	1 cut(s)	531
MaeIII	GTNAC	3 cut(s)	398, 599, 908
MalI	GATC	3 cut(s)	75, 121, 428
MboI	GATC	3 cut(s)	73, 119, 426
MboII	GAAGA	6 cut(s)	171, 195, 375, 501, 510, 784
MfeI	CAATTG	1 cut(s)	669
MhlI	GDGCHC	2 cut(s)	23, 735
MluCI	AATT	8 cut(s)	187, 302, 571, 591, 669, 682, 850, 916
MlyI	GAGTC	2 cut(s)	251, 524
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	7 cut(s)	55, 105, 193, 202, 258, 999, 1002
MroXI	GAANNNNTTC	1 cut(s)	621
MseI	TTAA	3 cut(s)	575, 681, 953
MslI	CAYNNNNRTG	1 cut(s)	630
MspI	CCGG	8 cut(s)	26, 39, 59, 375, 656, 726, 1046, 1088
MspR9I	CCNGG	4 cut(s)	71, 375, 656, 726
MunI	CAATTG	1 cut(s)	669
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	276
NciI	CCSGG	3 cut(s)	375, 656, 726
NdeII	GATC	3 cut(s)	73, 119, 426
NlaIII	CATG	5 cut(s)	91, 112, 217, 505, 974
NlaIV	GGNNCC	3 cut(s)	660, 1025, 1044
NmuCI	GTSAC	1 cut(s)	599
NspV	TTCGAA	1 cut(s)	551
PdmI	GAANNNNTTC	1 cut(s)	621
PfeI	GAWTC	1 cut(s)	548
PflFI	GACNNNGTC	1 cut(s)	412
PfoI	TCCNGGA	1 cut(s)	69
PkrI	GCNGC	7 cut(s)	93, 264, 281, 319, 357, 462, 968
PleI	GAGTC	2 cut(s)	251, 523
PpsI	GAGTC	2 cut(s)	251, 523
Psp124BI	GAGCTC	1 cut(s)	735
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	3 cut(s)	660, 1025, 1044
PspPI	GGNCC	2 cut(s)	323, 556
PstI	CTGCAG	1 cut(s)	322
PsyI	GACNNNGTC	1 cut(s)	412
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	630
SacI	GAGCTC	1 cut(s)	735
SaqAI	TTAA	3 cut(s)	575, 681, 953
SatI	GCNGC	7 cut(s)	92, 263, 280, 318, 356, 461, 967
Sau3AI	GATC	3 cut(s)	73, 119, 426
Sau96I	GGNCC	2 cut(s)	323, 556
SchI	GAGTC	2 cut(s)	251, 524
ScrFI	CCNGG	4 cut(s)	71, 375, 656, 726
SduI	GDGCHC	2 cut(s)	23, 735
SfaNI	GCATC	2 cut(s)	934, 952
SfcI	CTRYAG	1 cut(s)	318
SfuI	TTCGAA	1 cut(s)	551
SinI	GGWCC	2 cut(s)	323, 556
SmiMI	CAYNNNNRTG	1 cut(s)	630
Sse9I	AATT	8 cut(s)	187, 302, 571, 591, 669, 682, 850, 916
SsiI	CCGC	1 cut(s)	227
SspI	AATATT	1 cut(s)	496
SspMI	CTAG	1 cut(s)	531
SstI	GAGCTC	1 cut(s)	735
StyD4I	CCNGG	4 cut(s)	69, 373, 654, 724
TaaI	ACNGT	2 cut(s)	297, 837
TaqI	TCGA	5 cut(s)	419, 551, 650, 745, 1004
TasI	AATT	8 cut(s)	187, 302, 571, 591, 669, 682, 850, 916
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	3 cut(s)	575, 681, 953
Tru9I	TTAA	3 cut(s)	575, 681, 953
TscAI	CASTG	4 cut(s)	236, 300, 604, 1110
TseFI	GTSAC	1 cut(s)	599
TseI	GCWGC	7 cut(s)	91, 262, 279, 317, 355, 460, 966
Tsp45I	GTSAC	1 cut(s)	599
TspDTI	ATGAA	7 cut(s)	97, 154, 440, 490, 614, 774, 836
TspRI	CASTG	4 cut(s)	236, 300, 604, 1110
Tth111I	GACNNNGTC	1 cut(s)	412
VpaK11BI	GGWCC	2 cut(s)	323, 556
XapI	RAATTY	1 cut(s)	571
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XmnI	GAANNNNTTC	1 cut(s)	621
XspI	CTAG	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.